Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14825

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS14820 and ABIE51_RS14825 are separated by 362 nucleotidesABIE51_RS14825 and ABIE51_RS14830 are separated by 13 nucleotides ABIE51_RS14820: ABIE51_RS14820 - DUF72 domain-containing protein, at 3,220,272 to 3,221,087 _RS14820 ABIE51_RS14825: ABIE51_RS14825 - aldo/keto reductase, at 3,221,450 to 3,222,415 _RS14825 ABIE51_RS14830: ABIE51_RS14830 - MFS transporter, at 3,222,429 to 3,223,748 _RS14830 Position (kb) 3221 3222 3223Strain fitness (log2 ratio) -1 0 1 2at 3220.468 kb on - strand, within ABIE51_RS14820at 3221.288 kb on - strandat 3221.355 kb on + strandat 3221.403 kb on + strandat 3221.403 kb on + strandat 3221.403 kb on + strandat 3221.403 kb on + strandat 3221.404 kb on - strandat 3221.404 kb on - strandat 3221.404 kb on - strandat 3221.762 kb on + strand, within ABIE51_RS14825at 3221.762 kb on + strand, within ABIE51_RS14825at 3221.763 kb on - strand, within ABIE51_RS14825at 3222.003 kb on - strand, within ABIE51_RS14825at 3222.092 kb on + strand, within ABIE51_RS14825at 3222.659 kb on + strand, within ABIE51_RS14830at 3222.659 kb on + strand, within ABIE51_RS14830at 3222.777 kb on + strand, within ABIE51_RS14830at 3222.778 kb on - strand, within ABIE51_RS14830at 3222.778 kb on - strand, within ABIE51_RS14830at 3223.139 kb on + strand, within ABIE51_RS14830at 3223.139 kb on + strand, within ABIE51_RS14830at 3223.185 kb on + strand, within ABIE51_RS14830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,220,468 - ABIE51_RS14820 0.24 -1.0
3,221,288 - +1.7
3,221,355 + +1.8
3,221,403 + -0.3
3,221,403 + +0.3
3,221,403 + -0.6
3,221,403 + -0.9
3,221,404 - -0.1
3,221,404 - -1.7
3,221,404 - +0.5
3,221,762 + ABIE51_RS14825 0.32 -0.1
3,221,762 + ABIE51_RS14825 0.32 -1.7
3,221,763 - ABIE51_RS14825 0.32 +0.5
3,222,003 - ABIE51_RS14825 0.57 -0.3
3,222,092 + ABIE51_RS14825 0.66 +0.7
3,222,659 + ABIE51_RS14830 0.17 -1.2
3,222,659 + ABIE51_RS14830 0.17 -0.7
3,222,777 + ABIE51_RS14830 0.26 -0.3
3,222,778 - ABIE51_RS14830 0.26 +0.4
3,222,778 - ABIE51_RS14830 0.26 +0.1
3,223,139 + ABIE51_RS14830 0.54 +0.3
3,223,139 + ABIE51_RS14830 0.54 +0.5
3,223,185 + ABIE51_RS14830 0.57 +0.0

Or see this region's nucleotide sequence