Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS10475 and ABIE51_RS10480 are separated by 386 nucleotides ABIE51_RS10480 and ABIE51_RS10485 are separated by 21 nucleotides ABIE51_RS10485 and ABIE51_RS10490 are separated by 20 nucleotides
ABIE51_RS10475: ABIE51_RS10475 - SDR family oxidoreductase, at 2,265,895 to 2,266,653
_RS10475
ABIE51_RS10480: ABIE51_RS10480 - helix-turn-helix domain-containing protein, at 2,267,040 to 2,267,771
_RS10480
ABIE51_RS10485: ABIE51_RS10485 - hypothetical protein, at 2,267,793 to 2,268,353
_RS10485
ABIE51_RS10490: ABIE51_RS10490 - serine/threonine protein phosphatase, at 2,268,374 to 2,269,084
_RS10490
Position (kb)
2267
2268 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2266.052 kb on + strand, within ABIE51_RS10475 at 2266.208 kb on + strand, within ABIE51_RS10475 at 2266.366 kb on + strand, within ABIE51_RS10475 at 2266.522 kb on + strand, within ABIE51_RS10475 at 2266.523 kb on - strand, within ABIE51_RS10475 at 2266.523 kb on - strand, within ABIE51_RS10475 at 2266.523 kb on - strand, within ABIE51_RS10475 at 2266.661 kb on - strand at 2267.051 kb on - strand at 2267.052 kb on + strand at 2267.052 kb on + strand at 2267.052 kb on + strand at 2267.053 kb on - strand at 2267.053 kb on - strand at 2267.053 kb on - strand at 2267.055 kb on + strand at 2267.055 kb on + strand at 2267.055 kb on + strand at 2267.055 kb on + strand at 2267.055 kb on + strand at 2267.055 kb on + strand at 2267.055 kb on + strand at 2267.056 kb on - strand at 2267.056 kb on - strand at 2267.056 kb on - strand at 2267.056 kb on - strand at 2267.056 kb on - strand at 2267.103 kb on + strand at 2267.628 kb on + strand, within ABIE51_RS10480 at 2267.628 kb on + strand, within ABIE51_RS10480 at 2267.769 kb on + strand at 2267.769 kb on + strand at 2267.770 kb on - strand at 2267.770 kb on - strand at 2268.238 kb on + strand, within ABIE51_RS10485 at 2268.366 kb on + strand at 2268.367 kb on - strand at 2268.367 kb on - strand at 2268.720 kb on + strand, within ABIE51_RS10490 at 2268.721 kb on - strand, within ABIE51_RS10490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 2,266,052 + ABIE51_RS10475 0.21 +0.4 2,266,208 + ABIE51_RS10475 0.41 +0.1 2,266,366 + ABIE51_RS10475 0.62 +0.3 2,266,522 + ABIE51_RS10475 0.83 -0.2 2,266,523 - ABIE51_RS10475 0.83 -0.2 2,266,523 - ABIE51_RS10475 0.83 -0.9 2,266,523 - ABIE51_RS10475 0.83 -1.5 2,266,661 - -0.2 2,267,051 - -0.7 2,267,052 + -0.7 2,267,052 + +2.4 2,267,052 + -1.2 2,267,053 - +0.1 2,267,053 - -0.1 2,267,053 - +0.8 2,267,055 + -0.8 2,267,055 + -1.5 2,267,055 + +2.4 2,267,055 + +0.1 2,267,055 + -0.4 2,267,055 + +0.5 2,267,055 + -1.2 2,267,056 - -2.3 2,267,056 - -0.1 2,267,056 - -0.5 2,267,056 - -0.3 2,267,056 - -0.9 2,267,103 + -0.7 2,267,628 + ABIE51_RS10480 0.80 -0.5 2,267,628 + ABIE51_RS10480 0.80 -2.2 2,267,769 + +0.5 2,267,769 + +3.1 2,267,770 - +0.8 2,267,770 - -0.5 2,268,238 + ABIE51_RS10485 0.79 +0.2 2,268,366 + -0.1 2,268,367 - +0.2 2,268,367 - +1.4 2,268,720 + ABIE51_RS10490 0.49 +0.4 2,268,721 - ABIE51_RS10490 0.49 +0.5
Or see this region's nucleotide sequence