Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS09810 and ABIE51_RS09815 are separated by 4 nucleotides ABIE51_RS09815 and ABIE51_RS09820 are separated by 74 nucleotides ABIE51_RS09820 and ABIE51_RS09825 are separated by 204 nucleotides ABIE51_RS09825 and ABIE51_RS09830 are separated by 29 nucleotides
ABIE51_RS09810: ABIE51_RS09810 - NAD(P)/FAD-dependent oxidoreductase, at 2,118,749 to 2,119,939
_RS09810
ABIE51_RS09815: ABIE51_RS09815 - YaeQ family protein, at 2,119,944 to 2,120,501
_RS09815
ABIE51_RS09820: ABIE51_RS09820 - response regulator, at 2,120,576 to 2,120,923
_RS09820
ABIE51_RS09825: ABIE51_RS09825 - hypothetical protein, at 2,121,128 to 2,121,415
_RS09825
ABIE51_RS09830: ABIE51_RS09830 - hypothetical protein, at 2,121,445 to 2,121,654
_RS09830
Position (kb)
2119
2120
2121 Strain fitness (log2 ratio)
-2
-1
0
1 at 2119.008 kb on + strand, within ABIE51_RS09810 at 2119.008 kb on + strand, within ABIE51_RS09810 at 2119.009 kb on - strand, within ABIE51_RS09810 at 2119.659 kb on + strand, within ABIE51_RS09810 at 2119.708 kb on - strand, within ABIE51_RS09810 at 2119.752 kb on + strand, within ABIE51_RS09810 at 2119.753 kb on - strand, within ABIE51_RS09810 at 2119.753 kb on - strand, within ABIE51_RS09810 at 2119.927 kb on - strand at 2119.927 kb on - strand at 2119.927 kb on - strand at 2120.183 kb on - strand, within ABIE51_RS09815 at 2120.281 kb on + strand, within ABIE51_RS09815 at 2120.603 kb on + strand at 2120.604 kb on - strand at 2120.604 kb on - strand at 2120.901 kb on + strand at 2120.902 kb on - strand at 2120.902 kb on - strand at 2120.902 kb on - strand at 2121.092 kb on + strand at 2121.092 kb on + strand at 2121.092 kb on + strand at 2121.092 kb on + strand at 2121.092 kb on + strand at 2121.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 2,119,008 + ABIE51_RS09810 0.22 +1.4 2,119,008 + ABIE51_RS09810 0.22 +1.3 2,119,009 - ABIE51_RS09810 0.22 -0.8 2,119,659 + ABIE51_RS09810 0.76 +0.4 2,119,708 - ABIE51_RS09810 0.81 -0.2 2,119,752 + ABIE51_RS09810 0.84 +0.9 2,119,753 - ABIE51_RS09810 0.84 +0.6 2,119,753 - ABIE51_RS09810 0.84 -0.6 2,119,927 - +0.1 2,119,927 - -0.7 2,119,927 - -0.0 2,120,183 - ABIE51_RS09815 0.43 +1.3 2,120,281 + ABIE51_RS09815 0.60 +0.4 2,120,603 + -0.1 2,120,604 - -0.4 2,120,604 - -2.3 2,120,901 + -0.2 2,120,902 - +0.8 2,120,902 - -2.2 2,120,902 - -0.0 2,121,092 + -0.8 2,121,092 + +0.5 2,121,092 + -0.2 2,121,092 + +0.1 2,121,092 + -1.4 2,121,093 - -1.0
Or see this region's nucleotide sequence