Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS09815

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS09810 and ABIE51_RS09815 are separated by 4 nucleotidesABIE51_RS09815 and ABIE51_RS09820 are separated by 74 nucleotidesABIE51_RS09820 and ABIE51_RS09825 are separated by 204 nucleotidesABIE51_RS09825 and ABIE51_RS09830 are separated by 29 nucleotides ABIE51_RS09810: ABIE51_RS09810 - NAD(P)/FAD-dependent oxidoreductase, at 2,118,749 to 2,119,939 _RS09810 ABIE51_RS09815: ABIE51_RS09815 - YaeQ family protein, at 2,119,944 to 2,120,501 _RS09815 ABIE51_RS09820: ABIE51_RS09820 - response regulator, at 2,120,576 to 2,120,923 _RS09820 ABIE51_RS09825: ABIE51_RS09825 - hypothetical protein, at 2,121,128 to 2,121,415 _RS09825 ABIE51_RS09830: ABIE51_RS09830 - hypothetical protein, at 2,121,445 to 2,121,654 _RS09830 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -2 -1 0 1at 2119.008 kb on + strand, within ABIE51_RS09810at 2119.008 kb on + strand, within ABIE51_RS09810at 2119.009 kb on - strand, within ABIE51_RS09810at 2119.659 kb on + strand, within ABIE51_RS09810at 2119.708 kb on - strand, within ABIE51_RS09810at 2119.752 kb on + strand, within ABIE51_RS09810at 2119.753 kb on - strand, within ABIE51_RS09810at 2119.753 kb on - strand, within ABIE51_RS09810at 2119.927 kb on - strandat 2119.927 kb on - strandat 2119.927 kb on - strandat 2120.183 kb on - strand, within ABIE51_RS09815at 2120.281 kb on + strand, within ABIE51_RS09815at 2120.603 kb on + strandat 2120.604 kb on - strandat 2120.604 kb on - strandat 2120.901 kb on + strandat 2120.902 kb on - strandat 2120.902 kb on - strandat 2120.902 kb on - strandat 2121.092 kb on + strandat 2121.092 kb on + strandat 2121.092 kb on + strandat 2121.092 kb on + strandat 2121.092 kb on + strandat 2121.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,119,008 + ABIE51_RS09810 0.22 +1.4
2,119,008 + ABIE51_RS09810 0.22 +1.3
2,119,009 - ABIE51_RS09810 0.22 -0.8
2,119,659 + ABIE51_RS09810 0.76 +0.4
2,119,708 - ABIE51_RS09810 0.81 -0.2
2,119,752 + ABIE51_RS09810 0.84 +0.9
2,119,753 - ABIE51_RS09810 0.84 +0.6
2,119,753 - ABIE51_RS09810 0.84 -0.6
2,119,927 - +0.1
2,119,927 - -0.7
2,119,927 - -0.0
2,120,183 - ABIE51_RS09815 0.43 +1.3
2,120,281 + ABIE51_RS09815 0.60 +0.4
2,120,603 + -0.1
2,120,604 - -0.4
2,120,604 - -2.3
2,120,901 + -0.2
2,120,902 - +0.8
2,120,902 - -2.2
2,120,902 - -0.0
2,121,092 + -0.8
2,121,092 + +0.5
2,121,092 + -0.2
2,121,092 + +0.1
2,121,092 + -1.4
2,121,093 - -1.0

Or see this region's nucleotide sequence