Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02780 and ABIE51_RS02785 are separated by 100 nucleotides ABIE51_RS02785 and ABIE51_RS02790 are separated by 67 nucleotides
ABIE51_RS02780: ABIE51_RS02780 - aspartate aminotransferase family protein, at 614,006 to 615,376
_RS02780
ABIE51_RS02785: ABIE51_RS02785 - DUF2946 family protein, at 615,477 to 615,851
_RS02785
ABIE51_RS02790: ABIE51_RS02790 - TonB-dependent receptor, at 615,919 to 617,988
_RS02790
Position (kb) 615
616 Strain fitness (log2 ratio) -2
-1
0
1
2 at 614.549 kb on + strand, within ABIE51_RS02780 at 614.549 kb on + strand, within ABIE51_RS02780 at 614.550 kb on - strand, within ABIE51_RS02780 at 614.550 kb on - strand, within ABIE51_RS02780 at 614.950 kb on + strand, within ABIE51_RS02780 at 614.950 kb on + strand, within ABIE51_RS02780 at 614.950 kb on + strand, within ABIE51_RS02780 at 614.950 kb on + strand, within ABIE51_RS02780 at 614.951 kb on - strand, within ABIE51_RS02780 at 614.951 kb on - strand, within ABIE51_RS02780 at 614.955 kb on - strand, within ABIE51_RS02780 at 614.955 kb on - strand, within ABIE51_RS02780 at 615.006 kb on - strand, within ABIE51_RS02780 at 615.006 kb on - strand, within ABIE51_RS02780 at 615.006 kb on - strand, within ABIE51_RS02780 at 615.006 kb on - strand, within ABIE51_RS02780 at 615.006 kb on - strand, within ABIE51_RS02780 at 615.157 kb on + strand, within ABIE51_RS02780 at 615.437 kb on - strand at 615.437 kb on - strand at 615.437 kb on - strand at 615.437 kb on - strand at 615.691 kb on - strand, within ABIE51_RS02785 at 616.153 kb on + strand, within ABIE51_RS02790 at 616.154 kb on - strand, within ABIE51_RS02790 at 616.154 kb on - strand, within ABIE51_RS02790 at 616.378 kb on + strand, within ABIE51_RS02790 at 616.379 kb on - strand, within ABIE51_RS02790 at 616.379 kb on - strand, within ABIE51_RS02790 at 616.379 kb on - strand, within ABIE51_RS02790 at 616.513 kb on + strand, within ABIE51_RS02790 at 616.514 kb on - strand, within ABIE51_RS02790 at 616.564 kb on + strand, within ABIE51_RS02790 at 616.565 kb on - strand, within ABIE51_RS02790 at 616.597 kb on + strand, within ABIE51_RS02790 at 616.624 kb on + strand, within ABIE51_RS02790 at 616.624 kb on + strand, within ABIE51_RS02790 at 616.648 kb on + strand, within ABIE51_RS02790 at 616.681 kb on + strand, within ABIE51_RS02790 at 616.681 kb on + strand, within ABIE51_RS02790 at 616.681 kb on + strand, within ABIE51_RS02790 at 616.681 kb on + strand, within ABIE51_RS02790 at 616.798 kb on + strand, within ABIE51_RS02790 at 616.798 kb on + strand, within ABIE51_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 614,549 + ABIE51_RS02780 0.40 -0.5 614,549 + ABIE51_RS02780 0.40 +1.0 614,550 - ABIE51_RS02780 0.40 -1.3 614,550 - ABIE51_RS02780 0.40 +1.7 614,950 + ABIE51_RS02780 0.69 +0.6 614,950 + ABIE51_RS02780 0.69 -1.4 614,950 + ABIE51_RS02780 0.69 -0.8 614,950 + ABIE51_RS02780 0.69 -0.2 614,951 - ABIE51_RS02780 0.69 -0.9 614,951 - ABIE51_RS02780 0.69 -0.7 614,955 - ABIE51_RS02780 0.69 -0.5 614,955 - ABIE51_RS02780 0.69 -0.1 615,006 - ABIE51_RS02780 0.73 +0.8 615,006 - ABIE51_RS02780 0.73 -0.5 615,006 - ABIE51_RS02780 0.73 -2.6 615,006 - ABIE51_RS02780 0.73 +1.2 615,006 - ABIE51_RS02780 0.73 -0.2 615,157 + ABIE51_RS02780 0.84 +0.3 615,437 - -1.2 615,437 - -0.6 615,437 - -0.9 615,437 - +0.6 615,691 - ABIE51_RS02785 0.57 -1.4 616,153 + ABIE51_RS02790 0.11 -2.4 616,154 - ABIE51_RS02790 0.11 +0.4 616,154 - ABIE51_RS02790 0.11 -2.2 616,378 + ABIE51_RS02790 0.22 -0.5 616,379 - ABIE51_RS02790 0.22 +0.7 616,379 - ABIE51_RS02790 0.22 -0.1 616,379 - ABIE51_RS02790 0.22 +2.7 616,513 + ABIE51_RS02790 0.29 -0.6 616,514 - ABIE51_RS02790 0.29 -0.8 616,564 + ABIE51_RS02790 0.31 +1.1 616,565 - ABIE51_RS02790 0.31 -1.9 616,597 + ABIE51_RS02790 0.33 -0.5 616,624 + ABIE51_RS02790 0.34 -0.0 616,624 + ABIE51_RS02790 0.34 +0.5 616,648 + ABIE51_RS02790 0.35 +1.0 616,681 + ABIE51_RS02790 0.37 +0.5 616,681 + ABIE51_RS02790 0.37 -1.1 616,681 + ABIE51_RS02790 0.37 -1.8 616,681 + ABIE51_RS02790 0.37 +0.3 616,798 + ABIE51_RS02790 0.42 -0.2 616,798 + ABIE51_RS02790 0.42 -1.2
Or see this region's nucleotide sequence