Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02235 and ABIE51_RS02240 are separated by 81 nucleotides ABIE51_RS02240 and ABIE51_RS02245 are separated by 209 nucleotides ABIE51_RS02245 and ABIE51_RS02250 are separated by 110 nucleotides
ABIE51_RS02235: ABIE51_RS02235 - DNA-processing protein DprA, at 502,026 to 503,186
_RS02235
ABIE51_RS02240: ABIE51_RS02240 - LysM peptidoglycan-binding domain-containing protein, at 503,268 to 504,416
_RS02240
ABIE51_RS02245: ABIE51_RS02245 - peptide deformylase, at 504,626 to 505,141
_RS02245
ABIE51_RS02250: ABIE51_RS02250 - methionyl-tRNA formyltransferase, at 505,252 to 506,169
_RS02250
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.564 kb on + strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.565 kb on - strand, within ABIE51_RS02235 at 502.878 kb on - strand, within ABIE51_RS02235 at 502.912 kb on + strand, within ABIE51_RS02235 at 502.913 kb on - strand, within ABIE51_RS02235 at 502.913 kb on - strand, within ABIE51_RS02235 at 502.956 kb on + strand, within ABIE51_RS02235 at 502.957 kb on - strand, within ABIE51_RS02235 at 503.299 kb on + strand at 503.341 kb on + strand at 503.341 kb on + strand at 503.341 kb on + strand at 503.341 kb on + strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.342 kb on - strand at 503.420 kb on + strand, within ABIE51_RS02240 at 503.650 kb on + strand, within ABIE51_RS02240 at 503.650 kb on + strand, within ABIE51_RS02240 at 503.651 kb on - strand, within ABIE51_RS02240 at 503.651 kb on - strand, within ABIE51_RS02240 at 503.651 kb on - strand, within ABIE51_RS02240 at 503.651 kb on - strand, within ABIE51_RS02240 at 503.651 kb on - strand, within ABIE51_RS02240 at 503.824 kb on + strand, within ABIE51_RS02240 at 503.825 kb on - strand, within ABIE51_RS02240 at 503.825 kb on - strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.956 kb on + strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.957 kb on - strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.995 kb on + strand, within ABIE51_RS02240 at 503.996 kb on - strand, within ABIE51_RS02240 at 503.996 kb on - strand, within ABIE51_RS02240 at 503.996 kb on - strand, within ABIE51_RS02240 at 504.049 kb on + strand, within ABIE51_RS02240 at 504.049 kb on + strand, within ABIE51_RS02240 at 504.049 kb on + strand, within ABIE51_RS02240 at 504.049 kb on + strand, within ABIE51_RS02240 at 504.050 kb on - strand, within ABIE51_RS02240 at 504.050 kb on - strand, within ABIE51_RS02240 at 504.050 kb on - strand, within ABIE51_RS02240 at 504.050 kb on - strand, within ABIE51_RS02240 at 504.050 kb on - strand, within ABIE51_RS02240 at 504.175 kb on + strand, within ABIE51_RS02240 at 504.176 kb on - strand, within ABIE51_RS02240 at 504.176 kb on - strand, within ABIE51_RS02240 at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.319 kb on + strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.320 kb on - strand at 504.360 kb on + strand at 504.361 kb on + strand at 504.361 kb on + strand at 504.361 kb on + strand at 504.361 kb on + strand at 504.361 kb on + strand at 504.362 kb on - strand at 504.362 kb on - strand at 504.362 kb on - strand at 504.410 kb on + strand at 504.410 kb on + strand at 504.410 kb on + strand at 504.410 kb on + strand at 504.410 kb on + strand at 504.410 kb on + strand at 504.411 kb on - strand at 504.411 kb on - strand at 504.411 kb on - strand at 504.411 kb on - strand at 504.411 kb on - strand at 504.411 kb on - strand at 504.411 kb on - strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.455 kb on + strand at 504.456 kb on - strand at 504.456 kb on - strand at 504.456 kb on - strand at 504.456 kb on - strand at 504.456 kb on - strand at 504.456 kb on - strand at 504.456 kb on - strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.523 kb on + strand at 504.524 kb on + strand at 504.524 kb on - strand at 504.524 kb on - strand at 504.524 kb on - strand at 504.524 kb on - strand at 504.524 kb on - strand at 504.524 kb on - strand at 504.524 kb on - strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.525 kb on + strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.526 kb on - strand at 504.576 kb on - strand at 504.576 kb on - strand at 504.576 kb on - strand at 504.586 kb on + strand at 504.586 kb on + strand at 504.587 kb on - strand at 504.587 kb on - strand at 504.587 kb on - strand at 504.587 kb on - strand at 505.070 kb on + strand, within ABIE51_RS02245 at 505.070 kb on + strand, within ABIE51_RS02245 at 505.070 kb on + strand, within ABIE51_RS02245 at 505.070 kb on + strand, within ABIE51_RS02245 at 505.071 kb on - strand, within ABIE51_RS02245 at 505.071 kb on - strand, within ABIE51_RS02245 at 505.225 kb on + strand at 505.225 kb on + strand at 505.225 kb on + strand at 505.226 kb on - strand at 505.226 kb on - strand at 505.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 502,564 + ABIE51_RS02235 0.46 -2.4 502,564 + ABIE51_RS02235 0.46 -0.1 502,564 + ABIE51_RS02235 0.46 -0.6 502,564 + ABIE51_RS02235 0.46 -1.5 502,564 + ABIE51_RS02235 0.46 -0.4 502,564 + ABIE51_RS02235 0.46 +0.7 502,564 + ABIE51_RS02235 0.46 -0.8 502,564 + ABIE51_RS02235 0.46 -0.6 502,564 + ABIE51_RS02235 0.46 +0.1 502,564 + ABIE51_RS02235 0.46 +1.0 502,564 + ABIE51_RS02235 0.46 +0.2 502,564 + ABIE51_RS02235 0.46 -0.7 502,565 - ABIE51_RS02235 0.46 -0.4 502,565 - ABIE51_RS02235 0.46 -0.6 502,565 - ABIE51_RS02235 0.46 +0.0 502,565 - ABIE51_RS02235 0.46 -2.8 502,565 - ABIE51_RS02235 0.46 -0.8 502,565 - ABIE51_RS02235 0.46 -1.4 502,565 - ABIE51_RS02235 0.46 -0.1 502,565 - ABIE51_RS02235 0.46 +2.4 502,565 - ABIE51_RS02235 0.46 +0.6 502,565 - ABIE51_RS02235 0.46 -1.4 502,565 - ABIE51_RS02235 0.46 -0.4 502,878 - ABIE51_RS02235 0.73 -0.8 502,912 + ABIE51_RS02235 0.76 -0.2 502,913 - ABIE51_RS02235 0.76 +0.3 502,913 - ABIE51_RS02235 0.76 +0.3 502,956 + ABIE51_RS02235 0.80 -1.5 502,957 - ABIE51_RS02235 0.80 -0.4 503,299 + -0.3 503,341 + -0.4 503,341 + -1.0 503,341 + +0.4 503,341 + -0.9 503,342 - +1.4 503,342 - -0.3 503,342 - +0.1 503,342 - -0.3 503,342 - -0.1 503,342 - -0.6 503,342 - +1.3 503,342 - +0.6 503,342 - -0.4 503,420 + ABIE51_RS02240 0.13 +0.4 503,650 + ABIE51_RS02240 0.33 -1.3 503,650 + ABIE51_RS02240 0.33 -1.5 503,651 - ABIE51_RS02240 0.33 +0.7 503,651 - ABIE51_RS02240 0.33 -0.4 503,651 - ABIE51_RS02240 0.33 -0.8 503,651 - ABIE51_RS02240 0.33 +2.5 503,651 - ABIE51_RS02240 0.33 +0.5 503,824 + ABIE51_RS02240 0.48 +0.8 503,825 - ABIE51_RS02240 0.48 +0.7 503,825 - ABIE51_RS02240 0.48 +0.7 503,956 + ABIE51_RS02240 0.60 +0.9 503,956 + ABIE51_RS02240 0.60 +0.6 503,956 + ABIE51_RS02240 0.60 -0.4 503,956 + ABIE51_RS02240 0.60 -0.1 503,956 + ABIE51_RS02240 0.60 +0.6 503,956 + ABIE51_RS02240 0.60 +0.1 503,956 + ABIE51_RS02240 0.60 -1.5 503,956 + ABIE51_RS02240 0.60 +1.1 503,956 + ABIE51_RS02240 0.60 -0.4 503,956 + ABIE51_RS02240 0.60 +0.1 503,956 + ABIE51_RS02240 0.60 +0.1 503,956 + ABIE51_RS02240 0.60 -0.8 503,956 + ABIE51_RS02240 0.60 +0.6 503,956 + ABIE51_RS02240 0.60 -0.3 503,956 + ABIE51_RS02240 0.60 -0.6 503,956 + ABIE51_RS02240 0.60 -0.6 503,956 + ABIE51_RS02240 0.60 -1.5 503,956 + ABIE51_RS02240 0.60 -0.4 503,957 - ABIE51_RS02240 0.60 -0.3 503,957 - ABIE51_RS02240 0.60 +0.0 503,957 - ABIE51_RS02240 0.60 -0.0 503,957 - ABIE51_RS02240 0.60 -1.5 503,957 - ABIE51_RS02240 0.60 +2.1 503,957 - ABIE51_RS02240 0.60 -0.2 503,957 - ABIE51_RS02240 0.60 +0.5 503,957 - ABIE51_RS02240 0.60 -1.2 503,957 - ABIE51_RS02240 0.60 +0.9 503,957 - ABIE51_RS02240 0.60 -2.6 503,957 - ABIE51_RS02240 0.60 +0.3 503,957 - ABIE51_RS02240 0.60 -0.5 503,957 - ABIE51_RS02240 0.60 -0.7 503,957 - ABIE51_RS02240 0.60 -1.2 503,957 - ABIE51_RS02240 0.60 +1.7 503,957 - ABIE51_RS02240 0.60 -1.0 503,957 - ABIE51_RS02240 0.60 +1.6 503,957 - ABIE51_RS02240 0.60 -0.1 503,957 - ABIE51_RS02240 0.60 +0.1 503,957 - ABIE51_RS02240 0.60 +0.4 503,957 - ABIE51_RS02240 0.60 +0.6 503,957 - ABIE51_RS02240 0.60 -0.3 503,957 - ABIE51_RS02240 0.60 +0.6 503,995 + ABIE51_RS02240 0.63 -0.5 503,995 + ABIE51_RS02240 0.63 -0.4 503,995 + ABIE51_RS02240 0.63 -1.1 503,995 + ABIE51_RS02240 0.63 -0.7 503,995 + ABIE51_RS02240 0.63 -2.8 503,995 + ABIE51_RS02240 0.63 -0.2 503,995 + ABIE51_RS02240 0.63 +1.7 503,995 + ABIE51_RS02240 0.63 -0.9 503,996 - ABIE51_RS02240 0.63 +1.1 503,996 - ABIE51_RS02240 0.63 +0.1 503,996 - ABIE51_RS02240 0.63 +1.2 504,049 + ABIE51_RS02240 0.68 +0.3 504,049 + ABIE51_RS02240 0.68 -0.8 504,049 + ABIE51_RS02240 0.68 +1.2 504,049 + ABIE51_RS02240 0.68 -0.3 504,050 - ABIE51_RS02240 0.68 -0.8 504,050 - ABIE51_RS02240 0.68 +2.0 504,050 - ABIE51_RS02240 0.68 +0.1 504,050 - ABIE51_RS02240 0.68 +0.2 504,050 - ABIE51_RS02240 0.68 -0.0 504,175 + ABIE51_RS02240 0.79 -0.1 504,176 - ABIE51_RS02240 0.79 -1.8 504,176 - ABIE51_RS02240 0.79 -0.5 504,319 + +0.0 504,319 + +0.1 504,319 + +1.2 504,319 + +1.3 504,319 + +0.2 504,319 + -0.4 504,319 + -1.2 504,319 + -0.4 504,319 + +0.0 504,319 + -0.5 504,319 + -0.1 504,319 + -2.3 504,319 + +0.0 504,319 + +0.3 504,319 + -0.2 504,319 + +0.3 504,320 - -0.2 504,320 - +0.0 504,320 - -0.1 504,320 - +0.1 504,320 - -1.2 504,320 - +1.0 504,320 - +0.2 504,320 - -1.1 504,320 - -2.3 504,320 - +0.1 504,320 - -1.4 504,320 - -0.4 504,320 - +0.8 504,320 - -0.6 504,320 - -0.6 504,320 - -0.3 504,320 - +0.4 504,320 - -0.1 504,320 - -1.7 504,320 - -0.4 504,320 - -0.3 504,360 + +0.3 504,361 + +0.2 504,361 + +0.2 504,361 + -0.6 504,361 + -0.8 504,361 + -0.2 504,362 - +0.3 504,362 - +0.7 504,362 - -1.0 504,410 + -0.1 504,410 + -1.3 504,410 + -0.7 504,410 + -0.1 504,410 + +1.9 504,410 + -2.1 504,411 - -1.2 504,411 - -0.3 504,411 - -0.6 504,411 - +0.9 504,411 - +0.3 504,411 - -1.0 504,411 - +0.3 504,455 + -0.4 504,455 + -0.9 504,455 + -0.7 504,455 + +0.0 504,455 + -0.3 504,455 + -1.4 504,455 + -0.7 504,455 + -0.9 504,455 + +0.2 504,455 + -0.3 504,455 + +1.7 504,455 + +0.9 504,456 - +1.7 504,456 - -1.1 504,456 - +0.3 504,456 - +0.8 504,456 - -0.1 504,456 - -0.5 504,456 - +0.5 504,523 + -0.5 504,523 + +0.7 504,523 + -0.4 504,523 + -1.0 504,523 + -0.6 504,523 + -0.6 504,523 + -0.5 504,523 + -0.1 504,523 + -1.5 504,523 + +1.0 504,523 + +2.7 504,523 + -1.3 504,523 + -0.7 504,523 + +0.6 504,524 + -1.9 504,524 - -0.1 504,524 - +0.7 504,524 - +0.3 504,524 - +0.3 504,524 - +2.7 504,524 - +0.2 504,524 - +1.6 504,525 + +1.1 504,525 + -0.2 504,525 + +1.7 504,525 + -0.9 504,525 + +0.0 504,525 + +0.9 504,525 + +0.6 504,525 + -0.4 504,526 - -0.1 504,526 - -0.4 504,526 - +0.6 504,526 - +0.0 504,526 - -0.4 504,526 - +0.7 504,526 - -0.1 504,526 - -0.2 504,526 - -0.0 504,576 - +0.3 504,576 - -0.5 504,576 - +0.1 504,586 + +0.3 504,586 + -0.0 504,587 - +0.6 504,587 - +0.9 504,587 - +0.4 504,587 - -0.4 505,070 + ABIE51_RS02245 0.86 -1.1 505,070 + ABIE51_RS02245 0.86 -0.1 505,070 + ABIE51_RS02245 0.86 -1.0 505,070 + ABIE51_RS02245 0.86 -0.7 505,071 - ABIE51_RS02245 0.86 -1.2 505,071 - ABIE51_RS02245 0.86 -2.2 505,225 + -0.3 505,225 + -0.1 505,225 + -0.1 505,226 - +1.2 505,226 - +0.2 505,226 - -2.5
Or see this region's nucleotide sequence