Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00845

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00840 and ABIE51_RS00845 overlap by 1 nucleotidesABIE51_RS00845 and ABIE51_RS00850 are separated by 16 nucleotidesABIE51_RS00850 and ABIE51_RS00855 are separated by 72 nucleotides ABIE51_RS00840: ABIE51_RS00840 - ATP-binding protein, at 176,097 to 177,233 _RS00840 ABIE51_RS00845: ABIE51_RS00845 - response regulator, at 177,233 to 177,664 _RS00845 ABIE51_RS00850: ABIE51_RS00850 - 2OG-Fe(II) oxygenase, at 177,681 to 178,406 _RS00850 ABIE51_RS00855: ABIE51_RS00855 - sigma-54 dependent transcriptional regulator, at 178,479 to 179,888 _RS00855 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 176.236 kb on - strand, within ABIE51_RS00840at 176.365 kb on - strand, within ABIE51_RS00840at 176.365 kb on - strand, within ABIE51_RS00840at 176.442 kb on + strand, within ABIE51_RS00840at 176.442 kb on + strand, within ABIE51_RS00840at 176.443 kb on - strand, within ABIE51_RS00840at 176.443 kb on - strand, within ABIE51_RS00840at 176.443 kb on - strand, within ABIE51_RS00840at 176.443 kb on - strand, within ABIE51_RS00840at 176.670 kb on + strand, within ABIE51_RS00840at 176.671 kb on - strand, within ABIE51_RS00840at 176.671 kb on - strand, within ABIE51_RS00840at 176.739 kb on + strand, within ABIE51_RS00840at 176.739 kb on + strand, within ABIE51_RS00840at 176.739 kb on + strand, within ABIE51_RS00840at 176.739 kb on + strand, within ABIE51_RS00840at 176.740 kb on - strand, within ABIE51_RS00840at 176.740 kb on - strand, within ABIE51_RS00840at 176.740 kb on - strand, within ABIE51_RS00840at 176.740 kb on - strand, within ABIE51_RS00840at 176.740 kb on - strand, within ABIE51_RS00840at 176.740 kb on - strand, within ABIE51_RS00840at 177.036 kb on + strand, within ABIE51_RS00840at 177.036 kb on + strand, within ABIE51_RS00840at 177.037 kb on - strand, within ABIE51_RS00840at 177.037 kb on - strand, within ABIE51_RS00840at 177.243 kb on - strandat 177.359 kb on + strand, within ABIE51_RS00845at 177.359 kb on + strand, within ABIE51_RS00845at 177.359 kb on + strand, within ABIE51_RS00845at 177.360 kb on - strand, within ABIE51_RS00845at 177.360 kb on - strand, within ABIE51_RS00845at 177.360 kb on - strand, within ABIE51_RS00845at 177.360 kb on - strand, within ABIE51_RS00845at 177.381 kb on - strand, within ABIE51_RS00845at 177.381 kb on - strand, within ABIE51_RS00845at 177.381 kb on - strand, within ABIE51_RS00845at 177.493 kb on + strand, within ABIE51_RS00845at 177.493 kb on + strand, within ABIE51_RS00845at 177.493 kb on + strand, within ABIE51_RS00845at 177.493 kb on + strand, within ABIE51_RS00845at 177.494 kb on - strand, within ABIE51_RS00845at 177.494 kb on - strand, within ABIE51_RS00845at 177.551 kb on + strand, within ABIE51_RS00845at 177.551 kb on + strand, within ABIE51_RS00845at 177.551 kb on + strand, within ABIE51_RS00845at 177.552 kb on - strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.572 kb on + strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.573 kb on - strand, within ABIE51_RS00845at 177.633 kb on - strandat 177.633 kb on - strandat 177.682 kb on + strandat 177.682 kb on + strandat 177.683 kb on - strandat 177.683 kb on - strandat 177.777 kb on - strand, within ABIE51_RS00850at 177.777 kb on - strand, within ABIE51_RS00850at 177.777 kb on - strand, within ABIE51_RS00850at 177.841 kb on + strand, within ABIE51_RS00850at 177.842 kb on - strand, within ABIE51_RS00850at 177.883 kb on + strand, within ABIE51_RS00850at 177.883 kb on + strand, within ABIE51_RS00850at 177.883 kb on + strand, within ABIE51_RS00850at 177.883 kb on + strand, within ABIE51_RS00850at 177.884 kb on - strand, within ABIE51_RS00850at 177.884 kb on - strand, within ABIE51_RS00850at 177.884 kb on - strand, within ABIE51_RS00850at 177.884 kb on - strand, within ABIE51_RS00850at 177.937 kb on + strand, within ABIE51_RS00850at 177.937 kb on + strand, within ABIE51_RS00850at 177.937 kb on + strand, within ABIE51_RS00850at 177.938 kb on - strand, within ABIE51_RS00850at 177.955 kb on + strand, within ABIE51_RS00850at 177.956 kb on - strand, within ABIE51_RS00850at 177.962 kb on - strand, within ABIE51_RS00850at 177.980 kb on + strand, within ABIE51_RS00850at 177.980 kb on + strand, within ABIE51_RS00850at 177.980 kb on + strand, within ABIE51_RS00850at 177.980 kb on + strand, within ABIE51_RS00850at 177.981 kb on - strand, within ABIE51_RS00850at 177.982 kb on + strand, within ABIE51_RS00850at 177.982 kb on + strand, within ABIE51_RS00850at 177.982 kb on + strand, within ABIE51_RS00850at 177.982 kb on + strand, within ABIE51_RS00850at 177.983 kb on - strand, within ABIE51_RS00850at 177.983 kb on - strand, within ABIE51_RS00850at 178.135 kb on + strand, within ABIE51_RS00850at 178.135 kb on + strand, within ABIE51_RS00850at 178.135 kb on + strand, within ABIE51_RS00850at 178.480 kb on + strandat 178.480 kb on + strandat 178.480 kb on + strandat 178.481 kb on - strandat 178.549 kb on + strandat 178.550 kb on - strandat 178.550 kb on - strandat 178.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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176,236 - ABIE51_RS00840 0.12 +0.8
176,365 - ABIE51_RS00840 0.24 -0.2
176,365 - ABIE51_RS00840 0.24 +0.6
176,442 + ABIE51_RS00840 0.30 -0.6
176,442 + ABIE51_RS00840 0.30 +2.4
176,443 - ABIE51_RS00840 0.30 -0.7
176,443 - ABIE51_RS00840 0.30 -2.8
176,443 - ABIE51_RS00840 0.30 -1.3
176,443 - ABIE51_RS00840 0.30 -0.6
176,670 + ABIE51_RS00840 0.50 -1.1
176,671 - ABIE51_RS00840 0.50 -0.2
176,671 - ABIE51_RS00840 0.50 -2.0
176,739 + ABIE51_RS00840 0.56 +0.9
176,739 + ABIE51_RS00840 0.56 -1.5
176,739 + ABIE51_RS00840 0.56 +0.8
176,739 + ABIE51_RS00840 0.56 -2.4
176,740 - ABIE51_RS00840 0.57 -0.3
176,740 - ABIE51_RS00840 0.57 -0.4
176,740 - ABIE51_RS00840 0.57 +0.3
176,740 - ABIE51_RS00840 0.57 -2.0
176,740 - ABIE51_RS00840 0.57 -0.2
176,740 - ABIE51_RS00840 0.57 -0.5
177,036 + ABIE51_RS00840 0.83 +1.0
177,036 + ABIE51_RS00840 0.83 -0.9
177,037 - ABIE51_RS00840 0.83 -1.7
177,037 - ABIE51_RS00840 0.83 -0.8
177,243 - -0.2
177,359 + ABIE51_RS00845 0.29 -0.9
177,359 + ABIE51_RS00845 0.29 -1.1
177,359 + ABIE51_RS00845 0.29 -1.9
177,360 - ABIE51_RS00845 0.29 -0.8
177,360 - ABIE51_RS00845 0.29 -2.2
177,360 - ABIE51_RS00845 0.29 -1.6
177,360 - ABIE51_RS00845 0.29 +0.5
177,381 - ABIE51_RS00845 0.34 -1.4
177,381 - ABIE51_RS00845 0.34 -0.6
177,381 - ABIE51_RS00845 0.34 +1.8
177,493 + ABIE51_RS00845 0.60 -1.8
177,493 + ABIE51_RS00845 0.60 -0.1
177,493 + ABIE51_RS00845 0.60 -0.8
177,493 + ABIE51_RS00845 0.60 -1.5
177,494 - ABIE51_RS00845 0.60 +0.2
177,494 - ABIE51_RS00845 0.60 -0.3
177,551 + ABIE51_RS00845 0.74 -1.7
177,551 + ABIE51_RS00845 0.74 -1.5
177,551 + ABIE51_RS00845 0.74 +0.3
177,552 - ABIE51_RS00845 0.74 -3.6
177,572 + ABIE51_RS00845 0.78 -0.2
177,572 + ABIE51_RS00845 0.78 +0.2
177,572 + ABIE51_RS00845 0.78 -0.6
177,572 + ABIE51_RS00845 0.78 -0.8
177,572 + ABIE51_RS00845 0.78 -1.7
177,572 + ABIE51_RS00845 0.78 -1.9
177,572 + ABIE51_RS00845 0.78 +0.4
177,572 + ABIE51_RS00845 0.78 +0.7
177,572 + ABIE51_RS00845 0.78 -0.6
177,572 + ABIE51_RS00845 0.78 -1.2
177,572 + ABIE51_RS00845 0.78 -1.3
177,573 - ABIE51_RS00845 0.79 +0.3
177,573 - ABIE51_RS00845 0.79 -0.5
177,573 - ABIE51_RS00845 0.79 -0.9
177,573 - ABIE51_RS00845 0.79 -0.7
177,573 - ABIE51_RS00845 0.79 -0.5
177,573 - ABIE51_RS00845 0.79 -0.6
177,573 - ABIE51_RS00845 0.79 +1.2
177,573 - ABIE51_RS00845 0.79 -2.6
177,573 - ABIE51_RS00845 0.79 -1.3
177,573 - ABIE51_RS00845 0.79 -2.9
177,633 - -0.1
177,633 - -0.1
177,682 + -0.6
177,682 + -0.9
177,683 - -0.8
177,683 - -0.2
177,777 - ABIE51_RS00850 0.13 +0.4
177,777 - ABIE51_RS00850 0.13 +0.8
177,777 - ABIE51_RS00850 0.13 -1.1
177,841 + ABIE51_RS00850 0.22 -1.1
177,842 - ABIE51_RS00850 0.22 +1.2
177,883 + ABIE51_RS00850 0.28 -0.6
177,883 + ABIE51_RS00850 0.28 +0.0
177,883 + ABIE51_RS00850 0.28 +0.2
177,883 + ABIE51_RS00850 0.28 +0.8
177,884 - ABIE51_RS00850 0.28 +1.0
177,884 - ABIE51_RS00850 0.28 -0.5
177,884 - ABIE51_RS00850 0.28 -0.3
177,884 - ABIE51_RS00850 0.28 -0.0
177,937 + ABIE51_RS00850 0.35 -1.8
177,937 + ABIE51_RS00850 0.35 -0.5
177,937 + ABIE51_RS00850 0.35 -0.5
177,938 - ABIE51_RS00850 0.35 -0.5
177,955 + ABIE51_RS00850 0.38 -2.0
177,956 - ABIE51_RS00850 0.38 -0.6
177,962 - ABIE51_RS00850 0.39 -0.6
177,980 + ABIE51_RS00850 0.41 +1.1
177,980 + ABIE51_RS00850 0.41 +1.2
177,980 + ABIE51_RS00850 0.41 -0.7
177,980 + ABIE51_RS00850 0.41 -0.7
177,981 - ABIE51_RS00850 0.41 -1.3
177,982 + ABIE51_RS00850 0.41 +0.4
177,982 + ABIE51_RS00850 0.41 -0.5
177,982 + ABIE51_RS00850 0.41 +1.7
177,982 + ABIE51_RS00850 0.41 -0.6
177,983 - ABIE51_RS00850 0.42 -0.4
177,983 - ABIE51_RS00850 0.42 +1.0
178,135 + ABIE51_RS00850 0.63 -0.9
178,135 + ABIE51_RS00850 0.63 -1.0
178,135 + ABIE51_RS00850 0.63 +0.5
178,480 + -1.4
178,480 + -0.7
178,480 + -0.4
178,481 - -0.0
178,549 + -0.5
178,550 - -1.0
178,550 - +2.8
178,550 - +0.3

Or see this region's nucleotide sequence