Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4163

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4162 and BT4163 are separated by 639 nucleotidesBT4163 and BT4164 are separated by 18 nucleotides BT4162: BT4162 - conserved hypothetical protein (NCBI ptt file), at 5,469,570 to 5,471,648 BT4162 BT4163: BT4163 - conserved hypothetical protein (NCBI ptt file), at 5,472,288 to 5,474,540 BT4163 BT4164: BT4164 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,474,559 to 5,477,825 BT4164 Position (kb) 5472 5473 5474 5475Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5471.314 kb on - strand, within BT4162at 5471.325 kb on + strand, within BT4162at 5471.325 kb on + strand, within BT4162at 5471.325 kb on + strand, within BT4162at 5471.337 kb on - strand, within BT4162at 5471.337 kb on - strand, within BT4162at 5471.340 kb on + strand, within BT4162at 5471.449 kb on - strandat 5471.490 kb on + strandat 5471.494 kb on + strandat 5471.494 kb on + strandat 5471.495 kb on - strandat 5471.517 kb on + strandat 5471.628 kb on + strandat 5471.629 kb on - strandat 5471.646 kb on + strandat 5471.646 kb on + strandat 5471.647 kb on - strandat 5471.693 kb on - strandat 5471.703 kb on + strandat 5471.714 kb on + strandat 5471.727 kb on + strandat 5471.809 kb on + strandat 5471.858 kb on + strandat 5471.859 kb on - strandat 5471.973 kb on - strandat 5472.011 kb on - strandat 5472.043 kb on + strandat 5472.111 kb on - strandat 5472.164 kb on - strandat 5472.178 kb on + strandat 5472.178 kb on + strandat 5472.244 kb on + strandat 5472.245 kb on - strandat 5472.245 kb on - strandat 5472.301 kb on - strandat 5472.363 kb on - strandat 5472.405 kb on - strandat 5472.411 kb on - strandat 5472.422 kb on + strandat 5472.423 kb on - strandat 5472.489 kb on + strandat 5472.507 kb on - strandat 5472.509 kb on - strandat 5472.553 kb on - strand, within BT4163at 5472.562 kb on - strand, within BT4163at 5472.563 kb on + strand, within BT4163at 5472.646 kb on + strand, within BT4163at 5472.725 kb on + strand, within BT4163at 5472.726 kb on - strand, within BT4163at 5472.788 kb on + strand, within BT4163at 5472.796 kb on + strand, within BT4163at 5472.796 kb on + strand, within BT4163at 5472.836 kb on + strand, within BT4163at 5472.836 kb on + strand, within BT4163at 5472.915 kb on - strand, within BT4163at 5472.916 kb on + strand, within BT4163at 5472.916 kb on + strand, within BT4163at 5472.916 kb on + strand, within BT4163at 5472.916 kb on + strand, within BT4163at 5472.919 kb on - strand, within BT4163at 5472.958 kb on - strand, within BT4163at 5473.014 kb on + strand, within BT4163at 5473.019 kb on + strand, within BT4163at 5473.023 kb on + strand, within BT4163at 5473.072 kb on + strand, within BT4163at 5473.072 kb on + strand, within BT4163at 5473.072 kb on + strand, within BT4163at 5473.073 kb on - strand, within BT4163at 5473.173 kb on - strand, within BT4163at 5473.180 kb on - strand, within BT4163at 5473.182 kb on - strand, within BT4163at 5473.185 kb on - strand, within BT4163at 5473.289 kb on - strand, within BT4163at 5473.350 kb on - strand, within BT4163at 5473.400 kb on + strand, within BT4163at 5473.406 kb on + strand, within BT4163at 5473.406 kb on + strand, within BT4163at 5473.407 kb on - strand, within BT4163at 5473.549 kb on - strand, within BT4163at 5473.563 kb on - strand, within BT4163at 5473.569 kb on + strand, within BT4163at 5473.571 kb on + strand, within BT4163at 5473.571 kb on + strand, within BT4163at 5473.723 kb on + strand, within BT4163at 5473.761 kb on + strand, within BT4163at 5473.761 kb on + strand, within BT4163at 5473.840 kb on + strand, within BT4163at 5473.886 kb on - strand, within BT4163at 5473.934 kb on - strand, within BT4163at 5473.934 kb on - strand, within BT4163at 5473.934 kb on - strand, within BT4163at 5474.081 kb on + strand, within BT4163at 5474.084 kb on + strand, within BT4163at 5474.095 kb on + strand, within BT4163at 5474.095 kb on + strand, within BT4163at 5474.129 kb on + strand, within BT4163at 5474.158 kb on + strand, within BT4163at 5474.202 kb on - strand, within BT4163at 5474.206 kb on + strand, within BT4163at 5474.207 kb on - strand, within BT4163at 5474.207 kb on - strand, within BT4163at 5474.257 kb on - strand, within BT4163at 5474.261 kb on - strand, within BT4163at 5474.329 kb on - strandat 5474.367 kb on - strandat 5474.376 kb on - strandat 5474.378 kb on + strandat 5474.379 kb on - strandat 5474.391 kb on + strandat 5474.392 kb on - strandat 5474.462 kb on + strandat 5474.462 kb on + strandat 5474.551 kb on - strandat 5474.554 kb on + strandat 5474.555 kb on - strandat 5474.555 kb on - strandat 5474.555 kb on - strandat 5474.616 kb on - strandat 5474.702 kb on - strandat 5474.702 kb on - strandat 5474.714 kb on - strandat 5474.714 kb on - strandat 5474.769 kb on + strandat 5474.770 kb on - strandat 5474.772 kb on - strandat 5474.814 kb on + strandat 5474.843 kb on + strandat 5474.844 kb on - strandat 5474.850 kb on + strandat 5474.850 kb on + strandat 5474.912 kb on - strand, within BT4164at 5475.029 kb on + strand, within BT4164at 5475.030 kb on - strand, within BT4164at 5475.030 kb on - strand, within BT4164at 5475.031 kb on + strand, within BT4164at 5475.073 kb on + strand, within BT4164at 5475.073 kb on + strand, within BT4164at 5475.074 kb on - strand, within BT4164at 5475.120 kb on - strand, within BT4164at 5475.130 kb on + strand, within BT4164at 5475.159 kb on - strand, within BT4164at 5475.215 kb on + strand, within BT4164at 5475.216 kb on - strand, within BT4164at 5475.297 kb on - strand, within BT4164at 5475.440 kb on - strand, within BT4164at 5475.445 kb on - strand, within BT4164at 5475.487 kb on - strand, within BT4164at 5475.524 kb on + strand, within BT4164at 5475.525 kb on - strand, within BT4164

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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5,471,314 - BT4162 0.84 -0.3
5,471,325 + BT4162 0.84 -1.2
5,471,325 + BT4162 0.84 -0.6
5,471,325 + BT4162 0.84 -0.5
5,471,337 - BT4162 0.85 -1.5
5,471,337 - BT4162 0.85 -0.3
5,471,340 + BT4162 0.85 +0.1
5,471,449 - +0.6
5,471,490 + +0.2
5,471,494 + -1.4
5,471,494 + -2.4
5,471,495 - +0.1
5,471,517 + -0.9
5,471,628 + -0.5
5,471,629 - -0.8
5,471,646 + +1.0
5,471,646 + -1.7
5,471,647 - -1.4
5,471,693 - +0.3
5,471,703 + -0.3
5,471,714 + +1.2
5,471,727 + -0.7
5,471,809 + -1.0
5,471,858 + +0.4
5,471,859 - +0.4
5,471,973 - -3.0
5,472,011 - -0.3
5,472,043 + +0.6
5,472,111 - +0.7
5,472,164 - -0.8
5,472,178 + -0.2
5,472,178 + +0.3
5,472,244 + -0.6
5,472,245 - -0.1
5,472,245 - -0.9
5,472,301 - +0.3
5,472,363 - -0.8
5,472,405 - -1.0
5,472,411 - +0.2
5,472,422 + -3.4
5,472,423 - -0.0
5,472,489 + +0.6
5,472,507 - -1.2
5,472,509 - +1.5
5,472,553 - BT4163 0.12 +0.3
5,472,562 - BT4163 0.12 -0.0
5,472,563 + BT4163 0.12 -0.0
5,472,646 + BT4163 0.16 -2.2
5,472,725 + BT4163 0.19 +0.2
5,472,726 - BT4163 0.19 -0.8
5,472,788 + BT4163 0.22 -0.3
5,472,796 + BT4163 0.23 +0.1
5,472,796 + BT4163 0.23 +0.6
5,472,836 + BT4163 0.24 -1.2
5,472,836 + BT4163 0.24 +0.6
5,472,915 - BT4163 0.28 +1.3
5,472,916 + BT4163 0.28 -2.5
5,472,916 + BT4163 0.28 +0.3
5,472,916 + BT4163 0.28 +0.5
5,472,916 + BT4163 0.28 -1.3
5,472,919 - BT4163 0.28 -1.9
5,472,958 - BT4163 0.30 -0.4
5,473,014 + BT4163 0.32 +1.3
5,473,019 + BT4163 0.32 +0.6
5,473,023 + BT4163 0.33 +0.8
5,473,072 + BT4163 0.35 +2.0
5,473,072 + BT4163 0.35 -0.1
5,473,072 + BT4163 0.35 +1.4
5,473,073 - BT4163 0.35 -0.4
5,473,173 - BT4163 0.39 -0.3
5,473,180 - BT4163 0.40 -1.1
5,473,182 - BT4163 0.40 +0.5
5,473,185 - BT4163 0.40 -0.0
5,473,289 - BT4163 0.44 -0.2
5,473,350 - BT4163 0.47 +1.2
5,473,400 + BT4163 0.49 -2.6
5,473,406 + BT4163 0.50 -0.5
5,473,406 + BT4163 0.50 +0.4
5,473,407 - BT4163 0.50 -1.3
5,473,549 - BT4163 0.56 +0.4
5,473,563 - BT4163 0.57 +0.5
5,473,569 + BT4163 0.57 +0.6
5,473,571 + BT4163 0.57 -1.3
5,473,571 + BT4163 0.57 -1.2
5,473,723 + BT4163 0.64 -1.4
5,473,761 + BT4163 0.65 -1.8
5,473,761 + BT4163 0.65 -0.4
5,473,840 + BT4163 0.69 +0.2
5,473,886 - BT4163 0.71 -1.3
5,473,934 - BT4163 0.73 -3.3
5,473,934 - BT4163 0.73 +0.2
5,473,934 - BT4163 0.73 +1.8
5,474,081 + BT4163 0.80 -0.9
5,474,084 + BT4163 0.80 -1.9
5,474,095 + BT4163 0.80 -0.8
5,474,095 + BT4163 0.80 -0.9
5,474,129 + BT4163 0.82 -0.7
5,474,158 + BT4163 0.83 +1.7
5,474,202 - BT4163 0.85 +0.0
5,474,206 + BT4163 0.85 -0.6
5,474,207 - BT4163 0.85 -1.6
5,474,207 - BT4163 0.85 -1.7
5,474,257 - BT4163 0.87 -0.2
5,474,261 - BT4163 0.88 +0.0
5,474,329 - +0.5
5,474,367 - +1.2
5,474,376 - -1.6
5,474,378 + -0.7
5,474,379 - +0.4
5,474,391 + +0.7
5,474,392 - -0.9
5,474,462 + +0.6
5,474,462 + +0.6
5,474,551 - +1.0
5,474,554 + -1.0
5,474,555 - +1.9
5,474,555 - -1.0
5,474,555 - +0.7
5,474,616 - -0.5
5,474,702 - +0.0
5,474,702 - -0.2
5,474,714 - -0.4
5,474,714 - +1.0
5,474,769 + -0.3
5,474,770 - +0.1
5,474,772 - +0.0
5,474,814 + -0.4
5,474,843 + -1.7
5,474,844 - +0.3
5,474,850 + +0.6
5,474,850 + -0.6
5,474,912 - BT4164 0.11 -2.3
5,475,029 + BT4164 0.14 -0.4
5,475,030 - BT4164 0.14 +0.2
5,475,030 - BT4164 0.14 -2.0
5,475,031 + BT4164 0.14 -0.5
5,475,073 + BT4164 0.16 +0.4
5,475,073 + BT4164 0.16 -1.1
5,475,074 - BT4164 0.16 -2.8
5,475,120 - BT4164 0.17 +0.7
5,475,130 + BT4164 0.17 -0.3
5,475,159 - BT4164 0.18 -0.2
5,475,215 + BT4164 0.20 -1.4
5,475,216 - BT4164 0.20 +0.1
5,475,297 - BT4164 0.23 +0.5
5,475,440 - BT4164 0.27 -0.2
5,475,445 - BT4164 0.27 -0.4
5,475,487 - BT4164 0.28 -1.5
5,475,524 + BT4164 0.30 -2.7
5,475,525 - BT4164 0.30 +1.6

Or see this region's nucleotide sequence