Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3437

Experiment: L-Fucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Fucose (C)
4,426,722	+				+0.3
4,426,723	-				-1.0
4,426,723	-				-0.3
4,426,733	-				+1.8
4,426,747	-				-0.2
4,426,747	-				+1.6
4,426,789	-				-1.3
4,426,797	-				-0.2
4,426,900	-				+0.9
4,426,938	+				-0.5
4,426,938	+				+0.9
4,426,946	-				+0.5
4,426,949	+				-2.1
4,426,950	-				+1.4
4,426,974	-				+0.1
4,426,995	+				-0.7
4,427,002	-				-0.6
4,427,002	-				-1.5
4,427,033	+				-1.6
4,427,034	-				-0.1
4,427,038	+				+0.3
4,427,040	+				-0.2
4,427,040	+				-0.9
4,427,040	+				+0.7
4,427,079	-				+1.1
4,427,128	+				-0.7
4,427,128	+				-3.0
4,427,129	-				+0.3
4,427,129	-				-1.3
4,427,129	-				-1.2
4,427,129	-				-0.9
4,427,148	+				+0.5
4,427,153	+				+1.2
4,427,177	+		BT3436	0.11	+0.2
4,427,177	+		BT3436	0.11	-2.1
4,427,178	-		BT3436	0.12	+0.4
4,427,193	-		BT3436	0.15	+0.4
4,427,199	+		BT3436	0.17	+0.5
4,427,199	+		BT3436	0.17	+1.8
4,427,200	-		BT3436	0.17	+0.1
4,427,200	-		BT3436	0.17	-2.3
4,427,214	-		BT3436	0.20	+0.0
4,427,265	-		BT3436	0.32	-1.6
4,427,265	-		BT3436	0.32	-0.3
4,427,274	-		BT3436	0.34	-1.4
4,427,274	-		BT3436	0.34	-0.1
4,427,276	-		BT3436	0.34	+0.6
4,427,286	+		BT3436	0.37	-0.7
4,427,293	+		BT3436	0.38	+0.7
4,427,297	+		BT3436	0.39	-1.7
4,427,298	-		BT3436	0.39	-2.0
4,427,349	+		BT3436	0.51	+2.1
4,427,349	+		BT3436	0.51	-0.6
4,427,349	+		BT3436	0.51	-0.5
4,427,359	-		BT3436	0.53	-0.3
4,427,360	-		BT3436	0.54	-1.0
4,427,372	+		BT3436	0.56	-1.9
4,427,372	+		BT3436	0.56	+0.8
4,427,426	-		BT3436	0.69	-1.0
4,427,490	+		BT3436	0.83	-0.3
4,427,490	+		BT3436	0.83	+0.0
4,427,548	-				-1.3
4,427,555	-				+0.0
4,427,555	-				+0.2
4,427,555	-				+1.8
4,427,566	-				-0.2
4,427,599	+				+0.4
4,427,599	+				-0.3
4,427,614	+				-1.7
4,427,618	+				+0.4
4,427,618	+				+0.8
4,427,619	-				-1.9
4,427,622	+				-0.5
4,427,622	+				+0.5
4,427,622	+				-0.9
4,427,623	-				-1.9
4,427,668	+				+0.2
4,427,668	+				+0.4
4,427,669	-				+0.9
4,427,721	+				-0.1
4,427,724	-				-1.1
4,427,766	-				-1.5
4,427,790	-				-1.7
4,427,812	+				-0.1
4,427,813	-				+1.0
4,427,816	+				+1.9
4,427,824	+				-0.4
4,427,825	-				+0.0
4,427,867	-				-0.3
4,427,884	-				+0.6
4,427,891	-		BT3437	0.10	-0.9
4,427,948	+		BT3437	0.14	-0.2
4,427,954	+		BT3437	0.14	-0.7
4,427,993	-		BT3437	0.16	-0.5
4,427,996	-		BT3437	0.17	-1.3
4,427,998	-		BT3437	0.17	-1.5
4,428,002	+		BT3437	0.17	-2.4
4,428,134	+		BT3437	0.25	-0.3
4,428,134	+		BT3437	0.25	-0.1
4,428,138	-		BT3437	0.25	-0.0
4,428,138	-		BT3437	0.25	-1.7
4,428,158	-		BT3437	0.26	-2.0
4,428,158	-		BT3437	0.26	+0.6
4,428,206	-		BT3437	0.29	-2.2
4,428,243	-		BT3437	0.31	-0.1
4,428,245	+		BT3437	0.32	+1.3
4,428,246	-		BT3437	0.32	+0.0
4,428,246	-		BT3437	0.32	-1.7
4,428,264	-		BT3437	0.33	+1.7
4,428,326	+		BT3437	0.36	+0.6
4,428,333	+		BT3437	0.37	-1.1
4,428,351	-		BT3437	0.38	-1.7
4,428,353	-		BT3437	0.38	+0.0
4,428,353	-		BT3437	0.38	+1.6
4,428,356	+		BT3437	0.38	+0.4
4,428,356	+		BT3437	0.38	-0.2
4,428,357	-		BT3437	0.38	-2.5
4,428,357	-		BT3437	0.38	+0.2
4,428,364	+		BT3437	0.39	+0.8
4,428,365	-		BT3437	0.39	-2.1
4,428,405	-		BT3437	0.41	+0.7
4,428,410	+		BT3437	0.42	+0.1
4,428,413	-		BT3437	0.42	-0.7
4,428,418	+		BT3437	0.42	+1.5
4,428,482	+		BT3437	0.46	+0.4
4,428,486	+		BT3437	0.46	+0.5
4,428,486	+		BT3437	0.46	-1.8
4,428,490	+		BT3437	0.46	+0.8
4,428,491	-		BT3437	0.46	-1.3
4,428,548	-		BT3437	0.50	-0.6
4,428,548	-				+0.3
4,428,553	+		BT3437	0.50	-1.5
4,428,553	+		BT3437	0.50	+0.3
4,428,557	-		BT3437	0.50	-1.2
4,428,576	-		BT3437	0.52	-0.0
4,428,587	+		BT3437	0.52	+0.1
4,428,598	-		BT3437	0.53	+0.6
4,428,660	+		BT3437	0.57	-0.4
4,428,661	-		BT3437	0.57	-1.1
4,428,681	+		BT3437	0.58	+1.4
4,428,716	+		BT3437	0.60	+0.2
4,428,736	+		BT3437	0.61	-0.7
4,428,736	+		BT3437	0.61	+0.1
4,428,738	+		BT3437	0.61	-2.0
4,428,738	+		BT3437	0.61	-0.8
4,428,740	+		BT3437	0.61	-0.7
4,428,776	+		BT3437	0.64	-0.8
4,428,779	-		BT3437	0.64	+0.7
4,428,779	-		BT3437	0.64	-0.7
4,428,779	-		BT3437	0.64	-1.5
4,428,781	-		BT3437	0.64	-1.7
4,428,800	+		BT3437	0.65	+0.6
4,428,809	+		BT3437	0.66	-0.2
4,428,810	-		BT3437	0.66	-0.3
4,428,852	+		BT3437	0.68	-1.2
4,428,853	-		BT3437	0.68	+1.0
4,428,853	-		BT3437	0.68	+0.3
4,428,856	+		BT3437	0.68	-3.3
4,428,868	+		BT3437	0.69	-0.8
4,428,872	-		BT3437	0.69	+1.0
4,428,969	+		BT3437	0.75	-0.4
4,428,970	-		BT3437	0.75	-0.1
4,428,970	-		BT3437	0.75	-0.6
4,428,976	-		BT3437	0.76	-0.9
4,428,994	-		BT3437	0.77	-0.4
4,429,038	-		BT3437	0.79	-1.4
4,429,051	+		BT3437	0.80	-1.2
4,429,054	-		BT3437	0.80	+1.0
4,429,101	-		BT3437	0.83	-0.6
4,429,112	+		BT3437	0.84	-0.5
4,429,113	-		BT3437	0.84	-0.3
4,429,113	-		BT3437	0.84	-2.3
4,429,115	-		BT3437	0.84	-0.2
4,429,117	-		BT3437	0.84	+0.2
4,429,135	+		BT3437	0.85	-0.3
4,429,138	-		BT3437	0.85	-0.7
4,429,143	+		BT3437	0.86	+0.5
4,429,217	+				+0.5
4,429,253	+				+0.6
4,429,255	+				-1.5
4,429,282	+				-1.7
4,429,338	-				-0.7
4,429,353	-				+0.3
4,429,388	+				-1.6
4,429,398	-				-0.3
4,429,418	+				+0.8
4,429,463	+				-0.2
4,429,473	+				-0.1
4,429,474	-				-0.7
4,429,493	+				-1.3
4,429,509	+				-0.8
4,429,550	-				+0.2
4,429,628	-		BT3438	0.22	+1.4
4,429,665	-		BT3438	0.31	-0.7
4,429,668	+		BT3438	0.32	-0.2
4,429,863	+		BT3438	0.78	+0.6
4,429,900	-		BT3438	0.87	-0.1
4,429,906	-		BT3438	0.88	-1.2
4,429,912	+		BT3438	0.89	+0.0
4,429,930	+				-0.1
4,429,934	-				+1.1
4,429,960	-				-0.8
4,429,964	-				-0.2
4,429,986	+				+1.0
4,430,024	+				+0.6
4,430,046	+				+1.8
4,430,056	-				-2.6
4,430,064	+				-1.1
4,430,067	-				-0.5
4,430,157	+				+1.2
4,430,170	-				-0.7
4,430,172	+				-3.6
4,430,184	+				-0.2
4,430,188	+				+0.6
4,430,189	-				+0.9
4,430,189	-				-2.5
4,430,189	-				-0.7
4,430,202	+				+1.0
4,430,202	+				-0.1
4,430,202	+				+0.5
4,430,202	+				-0.2
4,430,203	-				+0.7
4,430,204	+				-0.9
4,430,204	+				+0.2
4,430,216	-				+0.5
4,430,245	+		BT3439	0.11	-0.4
4,430,267	+		BT3439	0.13	+0.1
4,430,343	+		BT3439	0.17	+0.4
4,430,364	-		BT3439	0.18	+0.1