Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3272

Experiment: L-Fucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Fucose (C)
4,179,233	+		BT3271	0.71	-0.1
4,179,233	+		BT3271	0.71	-1.5
4,179,234	-		BT3271	0.71	+0.9
4,179,244	+		BT3271	0.71	-1.4
4,179,245	-		BT3271	0.71	-0.6
4,179,250	+		BT3271	0.71	+0.3
4,179,260	+		BT3271	0.72	-0.5
4,179,261	-		BT3271	0.72	-1.4
4,179,261	-		BT3271	0.72	+0.6
4,179,267	-		BT3271	0.72	-0.2
4,179,275	-		BT3271	0.72	+0.3
4,179,294	+		BT3271	0.73	+0.7
4,179,295	-		BT3271	0.73	+0.5
4,179,324	-		BT3271	0.74	-2.0
4,179,327	-		BT3271	0.74	-1.4
4,179,333	-		BT3271	0.74	-0.0
4,179,337	+		BT3271	0.74	-2.4
4,179,341	+		BT3271	0.74	-0.7
4,179,342	-		BT3271	0.74	-0.2
4,179,371	+		BT3271	0.75	-1.3
4,179,375	-		BT3271	0.75	-0.1
4,179,392	+		BT3271	0.76	-2.4
4,179,419	+		BT3271	0.76	-1.8
4,179,422	+		BT3271	0.77	+0.6
4,179,465	-		BT3271	0.78	-1.9
4,179,465	-		BT3271	0.78	+1.4
4,179,588	+		BT3271	0.81	-1.2
4,179,602	-		BT3271	0.82	-1.8
4,179,643	+		BT3271	0.83	-0.1
4,179,692	+		BT3271	0.85	-2.0
4,179,698	-		BT3271	0.85	+0.4
4,179,698	-		BT3271	0.85	-1.2
4,179,698	-		BT3271	0.85	-0.4
4,179,702	+		BT3271	0.85	+0.1
4,179,703	-		BT3271	0.85	-0.1
4,179,802	-		BT3271	0.88	-0.1
4,179,817	-		BT3271	0.88	-1.0
4,179,854	-		BT3271	0.89	-0.5
4,179,857	+		BT3271	0.89	-1.6
4,179,858	-		BT3271	0.90	-0.5
4,179,888	-				-0.2
4,179,893	-				+1.8
4,179,989	+				-2.2
4,180,038	-				-1.6
4,180,055	+				+0.1
4,180,139	-				+0.0
4,180,167	+				-0.7
4,180,215	-				-0.4
4,180,304	+				-2.1
4,180,305	-				-1.6
4,180,381	+		BT3272	0.11	-0.9
4,180,382	-		BT3272	0.11	-1.2
4,180,404	+		BT3272	0.12	-0.2
4,180,405	-		BT3272	0.12	+0.8
4,180,408	+		BT3272	0.13	+0.3
4,180,443	+		BT3272	0.15	+0.1
4,180,444	-		BT3272	0.15	+0.6
4,180,444	-		BT3272	0.15	-0.4
4,180,454	-		BT3272	0.16	-1.3
4,180,454	-		BT3272	0.16	-0.6
4,180,454	-		BT3272	0.16	-1.2
4,180,476	+		BT3272	0.17	-1.5
4,180,477	-		BT3272	0.17	-1.4
4,180,495	+		BT3272	0.19	-0.2
4,180,499	-		BT3272	0.19	-0.4
4,180,556	+		BT3272	0.23	+0.2
4,180,556	+		BT3272	0.23	-2.9
4,180,557	-		BT3272	0.23	+1.0
4,180,557	-		BT3272	0.23	-0.4
4,180,562	-		BT3272	0.23	-0.3
4,180,573	-		BT3272	0.24	+0.4
4,180,575	+		BT3272	0.24	-2.6
4,180,584	+		BT3272	0.25	-2.5
4,180,621	-		BT3272	0.27	-2.2
4,180,698	-		BT3272	0.32	-0.2
4,180,698	-		BT3272	0.32	-1.3
4,180,756	+		BT3272	0.36	+0.4
4,180,775	+		BT3272	0.38	+0.0
4,180,775	+		BT3272	0.38	-0.7
4,180,776	-		BT3272	0.38	+1.2
4,180,776	-		BT3272	0.38	+0.5
4,180,782	+		BT3272	0.38	-0.4
4,180,782	+		BT3272	0.38	-2.6
4,180,866	+		BT3272	0.44	+0.8
4,180,917	+		BT3272	0.47	-0.8
4,180,917	+		BT3272	0.47	+0.1
4,180,918	-		BT3272	0.47	-2.1
4,180,918	-		BT3272	0.47	-0.4
4,180,935	-		BT3272	0.49	-1.7
4,180,957	-		BT3272	0.50	-2.7
4,180,965	-		BT3272	0.51	-0.2
4,180,965	-		BT3272	0.51	-0.1
4,180,989	+		BT3272	0.52	-0.5
4,180,999	+		BT3272	0.53	-3.3
4,181,004	+		BT3272	0.53	-1.0
4,181,005	-		BT3272	0.53	-1.5
4,181,007	-		BT3272	0.54	-1.1
4,181,027	+		BT3272	0.55	+0.8
4,181,028	-		BT3272	0.55	-0.4
4,181,062	-		BT3272	0.57	-0.3
4,181,082	-		BT3272	0.59	+0.3
4,181,093	-		BT3272	0.59	+0.8
4,181,137	+		BT3272	0.62	-2.4
4,181,148	-		BT3272	0.63	+1.1
4,181,161	-		BT3272	0.64	-0.0
4,181,173	-		BT3272	0.65	+1.2
4,181,176	-		BT3272	0.65	-0.8
4,181,216	-		BT3272	0.68	-0.3
4,181,217	+		BT3272	0.68	+0.1
4,181,220	-		BT3272	0.68	+0.8
4,181,225	-		BT3272	0.68	-1.1
4,181,225	-		BT3272	0.68	+2.2
4,181,268	+		BT3272	0.71	-1.8
4,181,269	-		BT3272	0.71	-1.1
4,181,272	-		BT3272	0.72	+0.4
4,181,272	-		BT3272	0.72	-1.7
4,181,362	-		BT3272	0.78	-0.7
4,181,399	+		BT3272	0.80	-1.9
4,181,416	+		BT3272	0.81	-0.1
4,181,416	+		BT3272	0.81	+0.4
4,181,416	+		BT3272	0.81	-0.9
4,181,487	-		BT3272	0.86	-2.2
4,181,515	-		BT3272	0.88	-0.3
4,181,517	+		BT3272	0.88	-3.3
4,181,530	-		BT3272	0.89	+0.7
4,181,562	-				+1.1
4,181,623	-				-0.3
4,181,687	-				-3.3
4,181,697	-				+0.5
4,181,732	-				+0.2
4,181,744	-				+1.6
4,181,803	-		BT3273	0.12	-2.6
4,181,803	-		BT3273	0.12	-1.2
4,181,852	-		BT3273	0.19	-1.3
4,181,865	+		BT3273	0.21	+0.2
4,181,865	+		BT3273	0.21	-0.7
4,181,866	-		BT3273	0.21	+0.6
4,181,866	-		BT3273	0.21	+1.1
4,181,871	-		BT3273	0.22	-1.6
4,181,874	-		BT3273	0.22	+0.4
4,181,876	+		BT3273	0.23	-1.4
4,181,882	+		BT3273	0.23	-0.0
4,181,948	-		BT3273	0.33	-1.0
4,181,979	-		BT3273	0.37	-1.2
4,182,047	+		BT3273	0.47	-2.1
4,182,048	-		BT3273	0.47	-1.7
4,182,048	-		BT3273	0.47	-1.9
4,182,048	-		BT3273	0.47	-0.4
4,182,168	-		BT3273	0.64	-0.2
4,182,189	-		BT3273	0.67	-0.9
4,182,191	+		BT3273	0.67	-1.9
4,182,202	+		BT3273	0.68	+0.2
4,182,231	+		BT3273	0.73	-2.7
4,182,240	-		BT3273	0.74	-0.2
4,182,243	+		BT3273	0.74	+1.3
4,182,243	+		BT3273	0.74	-0.9
4,182,244	-		BT3273	0.74	-1.5
4,182,346	-		BT3273	0.89	-0.1
4,182,348	+		BT3273	0.89	-0.7
4,182,349	-		BT3273	0.89	-0.2
4,182,349	-		BT3273	0.89	-0.1
4,182,349	-		BT3273	0.89	+0.1
4,182,412	+				-0.7
4,182,412	+				-2.0
4,182,417	-				-0.1
4,182,417	-				-0.7
4,182,424	-				+0.8
4,182,433	-				+0.1
4,182,470	+				+0.4
4,182,518	-				+0.4
4,182,523	+				-0.5
4,182,574	+				+0.7
4,182,588	+				+0.5
4,182,588	+				+0.9
4,182,644	+		BT3274	0.11	-0.7
4,182,688	-		BT3274	0.13	+0.6