Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2046

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2044 and BT2045 overlap by 33 nucleotidesBT2045 and BT2046 are separated by 374 nucleotidesBT2046 and BT2047 are separated by 37 nucleotidesBT2047 and BT2048 are separated by 4 nucleotides BT2044: BT2044 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 2,566,479 to 2,567,027 BT2044 BT2045: BT2045 - hypothetical protein (NCBI ptt file), at 2,566,995 to 2,567,309 BT2045 BT2046: BT2046 - putative cardiolipin synthetase (NCBI ptt file), at 2,567,684 to 2,568,880 BT2046 BT2047: BT2047 - thymidylate synthase (NCBI ptt file), at 2,568,918 to 2,569,712 BT2047 BT2048: BT2048 - dihydrofolate reductase (NCBI ptt file), at 2,569,717 to 2,570,211 BT2048 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2566.708 kb on - strand, within BT2044at 2566.739 kb on + strand, within BT2044at 2566.740 kb on - strand, within BT2044at 2566.816 kb on + strand, within BT2044at 2566.836 kb on + strand, within BT2044at 2566.891 kb on - strand, within BT2044at 2566.903 kb on + strand, within BT2044at 2566.993 kb on - strandat 2567.228 kb on + strand, within BT2045at 2567.228 kb on + strand, within BT2045at 2567.232 kb on + strand, within BT2045at 2567.338 kb on + strandat 2567.477 kb on - strandat 2567.569 kb on + strandat 2568.065 kb on + strand, within BT2046at 2568.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,566,708 - BT2044 0.42 -2.0
2,566,739 + BT2044 0.47 -0.4
2,566,740 - BT2044 0.48 -0.8
2,566,816 + BT2044 0.61 -0.3
2,566,836 + BT2044 0.65 +0.2
2,566,891 - BT2044 0.75 -2.9
2,566,903 + BT2044 0.77 +1.3
2,566,993 - -1.6
2,567,228 + BT2045 0.74 +2.0
2,567,228 + BT2045 0.74 -1.6
2,567,232 + BT2045 0.75 -0.5
2,567,338 + +0.2
2,567,477 - -0.3
2,567,569 + -0.3
2,568,065 + BT2046 0.32 -3.9
2,568,779 - -2.2

Or see this region's nucleotide sequence