Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07295 and MMP_RS07300 are separated by 10 nucleotides MMP_RS07300 and MMP_RS07305 are separated by 31 nucleotides MMP_RS07305 and MMP_RS07310 are separated by 14 nucleotides MMP_RS07310 and MMP_RS07320 are separated by 227 nucleotides
MMP_RS07295: MMP_RS07295 - 50S ribosomal protein L18, at 1,390,803 to 1,391,384
_RS07295
MMP_RS07300: MMP_RS07300 - 30S ribosomal protein S5, at 1,391,395 to 1,392,072
_RS07300
MMP_RS07305: MMP_RS07305 - 50S ribosomal protein L30, at 1,392,104 to 1,392,568
_RS07305
MMP_RS07310: MMP_RS07310 - 50S ribosomal protein L15, at 1,392,583 to 1,393,014
_RS07310
MMP_RS07320: MMP_RS07320 - preprotein translocase subunit SecY, at 1,393,242 to 1,394,570
_RS07320
Position (kb)
1392
1393 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1391.393 kb on + strand at 1392.205 kb on - strand at 1392.436 kb on + strand at 1393.095 kb on - strand at 1393.175 kb on + strand at 1393.271 kb on - strand at 1393.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations remove 1,391,393 + -0.5 1,392,205 - -1.9 1,392,436 + +1.1 1,393,095 - -2.7 1,393,175 + -3.5 1,393,271 - -3.3 1,393,363 + -3.6
Or see this region's nucleotide sequence