Experiment: L-Serine (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24775 and EX31_RS24780 are separated by 51 nucleotides EX31_RS24780 and EX31_RS25690 are separated by 355 nucleotides EX31_RS25690 and EX31_RS24790 are separated by 665 nucleotides
EX31_RS24775: EX31_RS24775 - copper homeostasis membrane protein CopD, at 725,344 to 726,228
_RS24775
EX31_RS24780: EX31_RS24780 - YebY family protein, at 726,280 to 726,615
_RS24780
EX31_RS25690: EX31_RS25690 - tyrosine-type recombinase/integrase, at 726,971 to 727,123
_RS25690
EX31_RS24790: EX31_RS24790 - cation transporter, at 727,789 to 728,700
_RS24790
Position (kb) 726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 725.985 kb on + strand, within EX31_RS24775 at 725.985 kb on + strand, within EX31_RS24775 at 726.022 kb on + strand, within EX31_RS24775 at 726.023 kb on - strand, within EX31_RS24775 at 726.056 kb on + strand, within EX31_RS24775 at 726.107 kb on + strand, within EX31_RS24775 at 726.140 kb on - strand at 726.140 kb on - strand at 726.140 kb on - strand at 726.140 kb on - strand at 726.144 kb on + strand at 726.243 kb on + strand at 726.243 kb on + strand at 726.244 kb on - strand at 726.244 kb on - strand at 726.244 kb on - strand at 726.244 kb on - strand at 726.247 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.297 kb on - strand at 726.317 kb on + strand, within EX31_RS24780 at 726.371 kb on - strand, within EX31_RS24780 at 726.436 kb on + strand, within EX31_RS24780 at 726.436 kb on + strand, within EX31_RS24780 at 726.436 kb on + strand, within EX31_RS24780 at 726.437 kb on - strand, within EX31_RS24780 at 726.437 kb on - strand, within EX31_RS24780 at 726.437 kb on - strand, within EX31_RS24780 at 726.589 kb on - strand at 726.589 kb on - strand at 726.645 kb on + strand at 726.646 kb on - strand at 726.664 kb on - strand at 726.687 kb on + strand at 726.687 kb on + strand at 726.698 kb on + strand at 726.698 kb on + strand at 726.698 kb on + strand at 726.699 kb on - strand at 726.699 kb on - strand at 726.699 kb on - strand at 726.701 kb on + strand at 726.702 kb on - strand at 726.707 kb on + strand at 726.707 kb on + strand at 726.707 kb on + strand at 726.708 kb on - strand at 726.708 kb on - strand at 726.708 kb on - strand at 726.708 kb on - strand at 726.708 kb on - strand at 726.731 kb on - strand at 726.752 kb on + strand at 726.759 kb on + strand at 726.760 kb on - strand at 726.760 kb on - strand at 726.760 kb on - strand at 726.934 kb on - strand at 726.934 kb on - strand at 726.934 kb on - strand at 726.973 kb on - strand at 726.973 kb on - strand at 726.975 kb on - strand at 726.975 kb on - strand at 726.975 kb on - strand at 727.034 kb on - strand, within EX31_RS25690 at 727.034 kb on - strand, within EX31_RS25690 at 727.034 kb on - strand, within EX31_RS25690 at 727.044 kb on - strand, within EX31_RS25690 at 727.119 kb on + strand at 727.119 kb on + strand at 727.120 kb on - strand at 727.120 kb on - strand at 727.231 kb on - strand at 727.252 kb on - strand at 727.255 kb on + strand at 727.256 kb on - strand at 727.256 kb on - strand at 727.258 kb on - strand at 727.274 kb on - strand at 727.395 kb on + strand at 727.395 kb on + strand at 727.396 kb on - strand at 727.417 kb on + strand at 727.417 kb on + strand at 727.417 kb on + strand at 727.418 kb on - strand at 727.471 kb on + strand at 727.572 kb on + strand at 727.572 kb on + strand at 727.605 kb on + strand at 727.605 kb on + strand at 727.623 kb on + strand at 727.626 kb on + strand at 727.626 kb on + strand at 727.626 kb on + strand at 727.627 kb on - strand at 727.628 kb on + strand at 727.628 kb on + strand at 727.628 kb on + strand at 727.656 kb on + strand at 727.707 kb on + strand at 727.708 kb on - strand at 727.709 kb on + strand at 727.730 kb on - strand at 727.730 kb on - strand at 727.828 kb on + strand at 727.871 kb on + strand at 728.001 kb on + strand, within EX31_RS24790 at 728.032 kb on + strand, within EX31_RS24790 at 728.090 kb on - strand, within EX31_RS24790 at 728.090 kb on - strand, within EX31_RS24790 at 728.092 kb on - strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.107 kb on - strand, within EX31_RS24790 at 728.107 kb on - strand, within EX31_RS24790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking remove 725,985 + EX31_RS24775 0.72 -0.5 725,985 + EX31_RS24775 0.72 +0.2 726,022 + EX31_RS24775 0.77 +0.3 726,023 - EX31_RS24775 0.77 +2.4 726,056 + EX31_RS24775 0.80 -1.2 726,107 + EX31_RS24775 0.86 -0.6 726,140 - +0.2 726,140 - +0.6 726,140 - -0.0 726,140 - -0.8 726,144 + -0.2 726,243 + +0.3 726,243 + +0.1 726,244 - +1.3 726,244 - +1.6 726,244 - +1.5 726,244 - +0.8 726,247 + +0.1 726,296 + -0.3 726,296 + +0.0 726,296 + +0.6 726,296 + -1.0 726,296 + -1.3 726,297 - +1.2 726,317 + EX31_RS24780 0.11 -1.0 726,371 - EX31_RS24780 0.27 +0.9 726,436 + EX31_RS24780 0.46 -0.0 726,436 + EX31_RS24780 0.46 +0.7 726,436 + EX31_RS24780 0.46 -0.6 726,437 - EX31_RS24780 0.47 -1.1 726,437 - EX31_RS24780 0.47 +0.5 726,437 - EX31_RS24780 0.47 -2.2 726,589 - +1.2 726,589 - +1.1 726,645 + -0.7 726,646 - +0.3 726,664 - -0.5 726,687 + +1.1 726,687 + -2.7 726,698 + -0.2 726,698 + +3.0 726,698 + +0.8 726,699 - +0.5 726,699 - +0.6 726,699 - -1.0 726,701 + -2.2 726,702 - -0.6 726,707 + -1.7 726,707 + +2.8 726,707 + +0.6 726,708 - +1.3 726,708 - -1.9 726,708 - +1.8 726,708 - -1.3 726,708 - -0.3 726,731 - -0.9 726,752 + -2.0 726,759 + +1.5 726,760 - +0.5 726,760 - +1.0 726,760 - +0.0 726,934 - -0.3 726,934 - -0.5 726,934 - +0.3 726,973 - -0.2 726,973 - -1.6 726,975 - +0.3 726,975 - +0.7 726,975 - -1.0 727,034 - EX31_RS25690 0.41 -1.3 727,034 - EX31_RS25690 0.41 -1.0 727,034 - EX31_RS25690 0.41 +0.3 727,044 - EX31_RS25690 0.48 +0.3 727,119 + +1.6 727,119 + +2.2 727,120 - -0.3 727,120 - -0.4 727,231 - -1.6 727,252 - -0.3 727,255 + +0.4 727,256 - +1.3 727,256 - -0.1 727,258 - +1.7 727,274 - +1.7 727,395 + -1.0 727,395 + +0.0 727,396 - +3.3 727,417 + -1.4 727,417 + -1.0 727,417 + +0.9 727,418 - -1.9 727,471 + -0.6 727,572 + +0.8 727,572 + +0.6 727,605 + -1.0 727,605 + -0.3 727,623 + +0.0 727,626 + +0.8 727,626 + +0.6 727,626 + +2.3 727,627 - +0.6 727,628 + -0.5 727,628 + -1.4 727,628 + -0.0 727,656 + +0.8 727,707 + +1.7 727,708 - +1.8 727,709 + +0.5 727,730 - -1.6 727,730 - -1.2 727,828 + -0.2 727,871 + +0.2 728,001 + EX31_RS24790 0.23 -2.4 728,032 + EX31_RS24790 0.27 -0.7 728,090 - EX31_RS24790 0.33 +1.5 728,090 - EX31_RS24790 0.33 +0.5 728,092 - EX31_RS24790 0.33 -0.4 728,106 + EX31_RS24790 0.35 +0.9 728,106 + EX31_RS24790 0.35 +3.0 728,106 + EX31_RS24790 0.35 -1.3 728,106 + EX31_RS24790 0.35 +0.4 728,106 + EX31_RS24790 0.35 +1.4 728,106 + EX31_RS24790 0.35 +0.5 728,106 + EX31_RS24790 0.35 -1.0 728,107 - EX31_RS24790 0.35 +0.8 728,107 - EX31_RS24790 0.35 -0.6
Or see this region's nucleotide sequence