Experiment: L-Serine (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24040 and EX31_RS24045 overlap by 4 nucleotides EX31_RS24045 and EX31_RS24050 overlap by 4 nucleotides EX31_RS24050 and EX31_RS24055 are separated by 17 nucleotides
EX31_RS24040: EX31_RS24040 - ABC transporter ATP-binding protein, at 576,148 to 577,767
_RS24040
EX31_RS24045: EX31_RS24045 - ABC transporter permease, at 577,764 to 578,627
_RS24045
EX31_RS24050: EX31_RS24050 - ABC transporter permease, at 578,624 to 579,583
_RS24050
EX31_RS24055: EX31_RS24055 - TIGR04028 family ABC transporter substrate-binding protein, at 579,601 to 581,241
_RS24055
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.674 kb on + strand at 577.675 kb on - strand at 577.746 kb on + strand at 577.746 kb on + strand at 577.818 kb on + strand at 577.819 kb on - strand at 577.819 kb on - strand at 577.819 kb on - strand at 577.870 kb on + strand, within EX31_RS24045 at 577.870 kb on + strand, within EX31_RS24045 at 577.870 kb on + strand, within EX31_RS24045 at 577.870 kb on + strand, within EX31_RS24045 at 577.871 kb on - strand, within EX31_RS24045 at 577.871 kb on - strand, within EX31_RS24045 at 577.874 kb on + strand, within EX31_RS24045 at 577.874 kb on + strand, within EX31_RS24045 at 577.894 kb on - strand, within EX31_RS24045 at 578.062 kb on + strand, within EX31_RS24045 at 578.091 kb on + strand, within EX31_RS24045 at 578.190 kb on - strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.232 kb on + strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.233 kb on - strand, within EX31_RS24045 at 578.365 kb on + strand, within EX31_RS24045 at 578.366 kb on - strand, within EX31_RS24045 at 578.381 kb on - strand, within EX31_RS24045 at 578.381 kb on - strand, within EX31_RS24045 at 578.471 kb on - strand, within EX31_RS24045 at 578.482 kb on - strand, within EX31_RS24045 at 578.482 kb on - strand, within EX31_RS24045 at 578.482 kb on - strand, within EX31_RS24045 at 578.600 kb on + strand at 578.601 kb on - strand at 578.601 kb on - strand at 578.617 kb on - strand at 578.651 kb on - strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.689 kb on - strand at 578.773 kb on + strand, within EX31_RS24050 at 578.989 kb on + strand, within EX31_RS24050 at 579.295 kb on + strand, within EX31_RS24050 at 579.295 kb on + strand, within EX31_RS24050 at 579.305 kb on + strand, within EX31_RS24050 at 579.306 kb on - strand, within EX31_RS24050 at 579.374 kb on - strand, within EX31_RS24050 at 579.381 kb on + strand, within EX31_RS24050 at 579.381 kb on + strand, within EX31_RS24050 at 579.381 kb on + strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.412 kb on - strand, within EX31_RS24050 at 579.446 kb on + strand, within EX31_RS24050 at 579.447 kb on - strand, within EX31_RS24050 at 579.472 kb on + strand, within EX31_RS24050 at 579.589 kb on - strand at 579.602 kb on + strand at 579.603 kb on - strand at 579.603 kb on - strand at 579.627 kb on - strand at 579.719 kb on + strand at 579.719 kb on + strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.738 kb on - strand at 579.738 kb on - strand at 579.738 kb on - strand at 579.890 kb on + strand, within EX31_RS24055 at 580.005 kb on + strand, within EX31_RS24055 at 580.005 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.089 kb on - strand, within EX31_RS24055 at 580.089 kb on - strand, within EX31_RS24055 at 580.093 kb on - strand, within EX31_RS24055 at 580.093 kb on - strand, within EX31_RS24055 at 580.191 kb on - strand, within EX31_RS24055 at 580.217 kb on + strand, within EX31_RS24055 at 580.217 kb on + strand, within EX31_RS24055 at 580.218 kb on - strand, within EX31_RS24055 at 580.218 kb on - strand, within EX31_RS24055 at 580.218 kb on - strand, within EX31_RS24055 at 580.279 kb on - strand, within EX31_RS24055 at 580.439 kb on + strand, within EX31_RS24055 at 580.439 kb on + strand, within EX31_RS24055 at 580.440 kb on - strand, within EX31_RS24055 at 580.580 kb on + strand, within EX31_RS24055 at 580.580 kb on + strand, within EX31_RS24055
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking remove 577,674 + +0.0 577,675 - +0.3 577,746 + +0.2 577,746 + +2.4 577,818 + -1.5 577,819 - +0.9 577,819 - +0.5 577,819 - +0.1 577,870 + EX31_RS24045 0.12 -0.1 577,870 + EX31_RS24045 0.12 +0.4 577,870 + EX31_RS24045 0.12 +0.5 577,870 + EX31_RS24045 0.12 +0.3 577,871 - EX31_RS24045 0.12 +0.4 577,871 - EX31_RS24045 0.12 +0.3 577,874 + EX31_RS24045 0.13 -0.1 577,874 + EX31_RS24045 0.13 +0.2 577,894 - EX31_RS24045 0.15 -2.7 578,062 + EX31_RS24045 0.34 +0.3 578,091 + EX31_RS24045 0.38 +0.9 578,190 - EX31_RS24045 0.49 +2.7 578,232 + EX31_RS24045 0.54 +0.8 578,232 + EX31_RS24045 0.54 -0.6 578,232 + EX31_RS24045 0.54 +1.8 578,232 + EX31_RS24045 0.54 +0.6 578,232 + EX31_RS24045 0.54 +1.3 578,232 + EX31_RS24045 0.54 +0.3 578,232 + EX31_RS24045 0.54 +0.1 578,232 + EX31_RS24045 0.54 +0.6 578,232 + EX31_RS24045 0.54 +0.3 578,232 + EX31_RS24045 0.54 -0.0 578,233 - EX31_RS24045 0.54 -1.5 578,233 - EX31_RS24045 0.54 +1.0 578,233 - EX31_RS24045 0.54 -0.1 578,233 - EX31_RS24045 0.54 +1.0 578,233 - EX31_RS24045 0.54 -2.0 578,233 - EX31_RS24045 0.54 +0.9 578,233 - EX31_RS24045 0.54 +0.1 578,233 - EX31_RS24045 0.54 +0.3 578,233 - EX31_RS24045 0.54 -1.8 578,233 - EX31_RS24045 0.54 -1.1 578,233 - EX31_RS24045 0.54 +1.0 578,233 - EX31_RS24045 0.54 -0.7 578,233 - EX31_RS24045 0.54 -3.0 578,233 - EX31_RS24045 0.54 +0.9 578,233 - EX31_RS24045 0.54 +0.4 578,233 - EX31_RS24045 0.54 -1.5 578,233 - EX31_RS24045 0.54 -0.3 578,365 + EX31_RS24045 0.70 -1.1 578,366 - EX31_RS24045 0.70 +0.5 578,381 - EX31_RS24045 0.71 -0.1 578,381 - EX31_RS24045 0.71 +0.4 578,471 - EX31_RS24045 0.82 +0.4 578,482 - EX31_RS24045 0.83 +0.6 578,482 - EX31_RS24045 0.83 -0.1 578,482 - EX31_RS24045 0.83 +0.6 578,600 + +0.2 578,601 - -0.4 578,601 - +0.0 578,617 - +0.3 578,651 - -0.1 578,666 - -0.1 578,666 - +0.4 578,689 - +0.7 578,773 + EX31_RS24050 0.16 -1.1 578,989 + EX31_RS24050 0.38 +0.5 579,295 + EX31_RS24050 0.70 +0.3 579,295 + EX31_RS24050 0.70 +0.9 579,305 + EX31_RS24050 0.71 -0.7 579,306 - EX31_RS24050 0.71 -0.9 579,374 - EX31_RS24050 0.78 -0.7 579,381 + EX31_RS24050 0.79 -1.1 579,381 + EX31_RS24050 0.79 +1.7 579,381 + EX31_RS24050 0.79 -1.7 579,382 - EX31_RS24050 0.79 -0.1 579,382 - EX31_RS24050 0.79 -0.6 579,382 - EX31_RS24050 0.79 -0.0 579,382 - EX31_RS24050 0.79 -1.0 579,412 - EX31_RS24050 0.82 +1.4 579,446 + EX31_RS24050 0.86 -0.1 579,447 - EX31_RS24050 0.86 -2.8 579,472 + EX31_RS24050 0.88 +2.3 579,589 - +1.1 579,602 + +0.0 579,603 - -1.0 579,603 - +0.7 579,627 - -2.0 579,719 + +0.8 579,719 + +0.7 579,720 - -0.5 579,720 - +1.3 579,720 - -0.8 579,720 - -0.6 579,720 - -0.7 579,720 - +0.6 579,720 - +0.2 579,737 + +0.3 579,737 + -0.8 579,737 + +0.4 579,737 + -1.1 579,737 + -0.3 579,738 - +0.7 579,738 - +0.6 579,738 - +0.1 579,890 + EX31_RS24055 0.18 -0.5 580,005 + EX31_RS24055 0.25 -1.3 580,005 + EX31_RS24055 0.25 -1.8 580,088 + EX31_RS24055 0.30 +0.8 580,088 + EX31_RS24055 0.30 -0.1 580,088 + EX31_RS24055 0.30 +0.2 580,088 + EX31_RS24055 0.30 +1.3 580,089 - EX31_RS24055 0.30 -0.7 580,089 - EX31_RS24055 0.30 +1.4 580,093 - EX31_RS24055 0.30 -0.1 580,093 - EX31_RS24055 0.30 -0.4 580,191 - EX31_RS24055 0.36 +1.4 580,217 + EX31_RS24055 0.38 -0.3 580,217 + EX31_RS24055 0.38 +1.3 580,218 - EX31_RS24055 0.38 +0.4 580,218 - EX31_RS24055 0.38 -1.5 580,218 - EX31_RS24055 0.38 -0.1 580,279 - EX31_RS24055 0.41 +0.9 580,439 + EX31_RS24055 0.51 +1.3 580,439 + EX31_RS24055 0.51 +0.1 580,440 - EX31_RS24055 0.51 -2.4 580,580 + EX31_RS24055 0.60 +2.4 580,580 + EX31_RS24055 0.60 +0.9
Or see this region's nucleotide sequence