Strain Fitness in Rahnella sp. WP5 around EX31_RS19280

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19275 and EX31_RS19280 are separated by 4 nucleotidesEX31_RS19280 and EX31_RS19285 are separated by 76 nucleotides EX31_RS19275: EX31_RS19275 - phosphotransferase RcsD, at 470,506 to 473,199 _RS19275 EX31_RS19280: EX31_RS19280 - transcriptional regulator RcsB, at 473,204 to 473,854 _RS19280 EX31_RS19285: EX31_RS19285 - two-component system sensor histidine kinase RcsC, at 473,931 to 476,792 _RS19285 Position (kb) 473 474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 472.234 kb on + strand, within EX31_RS19275at 472.235 kb on - strand, within EX31_RS19275at 472.245 kb on + strand, within EX31_RS19275at 472.319 kb on + strand, within EX31_RS19275at 472.319 kb on + strand, within EX31_RS19275at 472.320 kb on - strand, within EX31_RS19275at 472.320 kb on - strand, within EX31_RS19275at 472.359 kb on + strand, within EX31_RS19275at 472.369 kb on + strand, within EX31_RS19275at 472.369 kb on + strand, within EX31_RS19275at 472.369 kb on + strand, within EX31_RS19275at 472.370 kb on - strand, within EX31_RS19275at 472.370 kb on - strand, within EX31_RS19275at 472.437 kb on + strand, within EX31_RS19275at 472.437 kb on + strand, within EX31_RS19275at 472.504 kb on + strand, within EX31_RS19275at 472.504 kb on + strand, within EX31_RS19275at 472.506 kb on + strand, within EX31_RS19275at 472.506 kb on + strand, within EX31_RS19275at 472.506 kb on + strand, within EX31_RS19275at 472.506 kb on + strand, within EX31_RS19275at 472.506 kb on + strand, within EX31_RS19275at 472.507 kb on - strand, within EX31_RS19275at 472.511 kb on + strand, within EX31_RS19275at 472.511 kb on + strand, within EX31_RS19275at 472.511 kb on + strand, within EX31_RS19275at 472.511 kb on + strand, within EX31_RS19275at 472.511 kb on + strand, within EX31_RS19275at 472.512 kb on - strand, within EX31_RS19275at 472.512 kb on - strand, within EX31_RS19275at 472.583 kb on + strand, within EX31_RS19275at 472.586 kb on + strand, within EX31_RS19275at 472.700 kb on + strand, within EX31_RS19275at 472.701 kb on - strand, within EX31_RS19275at 472.734 kb on + strand, within EX31_RS19275at 472.786 kb on + strand, within EX31_RS19275at 472.787 kb on - strand, within EX31_RS19275at 472.788 kb on + strand, within EX31_RS19275at 472.788 kb on + strand, within EX31_RS19275at 472.788 kb on + strand, within EX31_RS19275at 472.788 kb on + strand, within EX31_RS19275at 472.788 kb on + strand, within EX31_RS19275at 472.788 kb on + strand, within EX31_RS19275at 472.789 kb on - strand, within EX31_RS19275at 472.801 kb on + strand, within EX31_RS19275at 472.801 kb on + strand, within EX31_RS19275at 472.801 kb on + strand, within EX31_RS19275at 472.801 kb on + strand, within EX31_RS19275at 472.801 kb on + strand, within EX31_RS19275at 472.801 kb on + strand, within EX31_RS19275at 472.802 kb on - strand, within EX31_RS19275at 472.802 kb on - strand, within EX31_RS19275at 472.823 kb on + strand, within EX31_RS19275at 472.835 kb on + strand, within EX31_RS19275at 472.835 kb on + strand, within EX31_RS19275at 472.835 kb on + strand, within EX31_RS19275at 472.836 kb on - strand, within EX31_RS19275at 472.836 kb on - strand, within EX31_RS19275at 472.841 kb on + strand, within EX31_RS19275at 472.929 kb on - strand, within EX31_RS19275at 472.990 kb on + strandat 472.990 kb on + strandat 472.990 kb on + strandat 472.991 kb on - strandat 472.991 kb on - strandat 472.991 kb on - strandat 472.991 kb on - strandat 473.102 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.110 kb on + strandat 473.111 kb on - strandat 473.111 kb on - strandat 473.111 kb on - strandat 473.111 kb on - strandat 473.193 kb on + strandat 473.197 kb on + strandat 473.197 kb on + strandat 473.197 kb on + strandat 473.209 kb on + strandat 473.209 kb on + strandat 473.209 kb on + strandat 473.210 kb on - strandat 473.212 kb on + strandat 473.212 kb on + strandat 473.212 kb on + strandat 473.213 kb on - strandat 473.220 kb on + strandat 473.220 kb on + strandat 473.220 kb on + strandat 473.220 kb on + strandat 473.257 kb on + strandat 473.263 kb on + strandat 473.263 kb on + strandat 473.263 kb on + strandat 473.298 kb on + strand, within EX31_RS19280at 473.298 kb on + strand, within EX31_RS19280at 473.338 kb on - strand, within EX31_RS19280at 473.420 kb on + strand, within EX31_RS19280at 473.420 kb on + strand, within EX31_RS19280at 473.420 kb on + strand, within EX31_RS19280at 473.422 kb on + strand, within EX31_RS19280at 473.422 kb on + strand, within EX31_RS19280at 473.422 kb on + strand, within EX31_RS19280at 473.422 kb on + strand, within EX31_RS19280at 473.422 kb on + strand, within EX31_RS19280at 473.422 kb on + strand, within EX31_RS19280at 473.423 kb on - strand, within EX31_RS19280at 473.445 kb on + strand, within EX31_RS19280at 473.445 kb on + strand, within EX31_RS19280at 473.497 kb on - strand, within EX31_RS19280at 473.740 kb on + strand, within EX31_RS19280at 473.813 kb on + strandat 473.813 kb on + strandat 473.868 kb on + strandat 473.868 kb on + strandat 473.872 kb on + strandat 473.872 kb on + strandat 473.965 kb on + strandat 473.968 kb on + strandat 474.021 kb on - strandat 474.171 kb on - strandat 474.233 kb on + strand, within EX31_RS19285at 474.234 kb on - strand, within EX31_RS19285at 474.234 kb on - strand, within EX31_RS19285at 474.234 kb on - strand, within EX31_RS19285at 474.235 kb on + strand, within EX31_RS19285at 474.236 kb on - strand, within EX31_RS19285at 474.305 kb on + strand, within EX31_RS19285at 474.305 kb on + strand, within EX31_RS19285at 474.306 kb on - strand, within EX31_RS19285at 474.306 kb on - strand, within EX31_RS19285at 474.306 kb on - strand, within EX31_RS19285at 474.308 kb on + strand, within EX31_RS19285at 474.309 kb on - strand, within EX31_RS19285at 474.316 kb on + strand, within EX31_RS19285at 474.316 kb on + strand, within EX31_RS19285at 474.382 kb on + strand, within EX31_RS19285at 474.425 kb on + strand, within EX31_RS19285at 474.425 kb on + strand, within EX31_RS19285at 474.425 kb on + strand, within EX31_RS19285at 474.425 kb on + strand, within EX31_RS19285at 474.425 kb on + strand, within EX31_RS19285at 474.426 kb on - strand, within EX31_RS19285at 474.426 kb on - strand, within EX31_RS19285at 474.426 kb on - strand, within EX31_RS19285at 474.426 kb on - strand, within EX31_RS19285at 474.428 kb on + strand, within EX31_RS19285at 474.428 kb on + strand, within EX31_RS19285at 474.428 kb on + strand, within EX31_RS19285at 474.428 kb on + strand, within EX31_RS19285at 474.429 kb on - strand, within EX31_RS19285at 474.429 kb on - strand, within EX31_RS19285at 474.513 kb on - strand, within EX31_RS19285at 474.533 kb on + strand, within EX31_RS19285at 474.632 kb on - strand, within EX31_RS19285at 474.632 kb on - strand, within EX31_RS19285at 474.632 kb on - strand, within EX31_RS19285at 474.632 kb on - strand, within EX31_RS19285at 474.642 kb on + strand, within EX31_RS19285at 474.642 kb on + strand, within EX31_RS19285at 474.642 kb on + strand, within EX31_RS19285at 474.643 kb on - strand, within EX31_RS19285at 474.643 kb on - strand, within EX31_RS19285at 474.710 kb on - strand, within EX31_RS19285at 474.720 kb on - strand, within EX31_RS19285at 474.729 kb on - strand, within EX31_RS19285at 474.729 kb on - strand, within EX31_RS19285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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472,234 + EX31_RS19275 0.64 +0.9
472,235 - EX31_RS19275 0.64 -0.7
472,245 + EX31_RS19275 0.65 -0.4
472,319 + EX31_RS19275 0.67 -0.3
472,319 + EX31_RS19275 0.67 +0.6
472,320 - EX31_RS19275 0.67 +1.8
472,320 - EX31_RS19275 0.67 -0.1
472,359 + EX31_RS19275 0.69 +0.4
472,369 + EX31_RS19275 0.69 +1.3
472,369 + EX31_RS19275 0.69 -1.6
472,369 + EX31_RS19275 0.69 -1.3
472,370 - EX31_RS19275 0.69 +1.7
472,370 - EX31_RS19275 0.69 +1.0
472,437 + EX31_RS19275 0.72 +1.2
472,437 + EX31_RS19275 0.72 -0.3
472,504 + EX31_RS19275 0.74 +1.0
472,504 + EX31_RS19275 0.74 +1.6
472,506 + EX31_RS19275 0.74 -0.3
472,506 + EX31_RS19275 0.74 -1.3
472,506 + EX31_RS19275 0.74 -0.2
472,506 + EX31_RS19275 0.74 +0.8
472,506 + EX31_RS19275 0.74 -1.7
472,507 - EX31_RS19275 0.74 -1.6
472,511 + EX31_RS19275 0.74 -1.9
472,511 + EX31_RS19275 0.74 +1.9
472,511 + EX31_RS19275 0.74 +1.0
472,511 + EX31_RS19275 0.74 +2.9
472,511 + EX31_RS19275 0.74 -1.7
472,512 - EX31_RS19275 0.74 -0.9
472,512 - EX31_RS19275 0.74 -1.0
472,583 + EX31_RS19275 0.77 +1.2
472,586 + EX31_RS19275 0.77 +0.2
472,700 + EX31_RS19275 0.81 +2.6
472,701 - EX31_RS19275 0.81 +1.0
472,734 + EX31_RS19275 0.83 -0.6
472,786 + EX31_RS19275 0.85 -0.9
472,787 - EX31_RS19275 0.85 +0.1
472,788 + EX31_RS19275 0.85 -0.8
472,788 + EX31_RS19275 0.85 -0.2
472,788 + EX31_RS19275 0.85 +0.9
472,788 + EX31_RS19275 0.85 +3.1
472,788 + EX31_RS19275 0.85 +0.5
472,788 + EX31_RS19275 0.85 +1.1
472,789 - EX31_RS19275 0.85 -1.1
472,801 + EX31_RS19275 0.85 -0.9
472,801 + EX31_RS19275 0.85 +0.2
472,801 + EX31_RS19275 0.85 +2.1
472,801 + EX31_RS19275 0.85 +0.6
472,801 + EX31_RS19275 0.85 +0.9
472,801 + EX31_RS19275 0.85 -2.3
472,802 - EX31_RS19275 0.85 -0.5
472,802 - EX31_RS19275 0.85 +0.8
472,823 + EX31_RS19275 0.86 +0.3
472,835 + EX31_RS19275 0.86 +0.9
472,835 + EX31_RS19275 0.86 +0.9
472,835 + EX31_RS19275 0.86 +1.1
472,836 - EX31_RS19275 0.86 -1.1
472,836 - EX31_RS19275 0.86 +0.2
472,841 + EX31_RS19275 0.87 -0.3
472,929 - EX31_RS19275 0.90 +1.3
472,990 + +2.3
472,990 + -0.3
472,990 + +0.2
472,991 - -0.1
472,991 - +1.1
472,991 - -0.9
472,991 - +1.7
473,102 + -0.6
473,110 + +0.3
473,110 + -0.7
473,110 + +0.4
473,110 + +2.1
473,110 + -0.5
473,110 + +2.1
473,110 + -0.8
473,110 + -0.5
473,110 + -1.7
473,110 + +0.2
473,110 + +0.4
473,110 + -2.2
473,110 + -0.3
473,110 + +0.4
473,110 + +0.5
473,111 - -1.4
473,111 - +2.1
473,111 - -0.3
473,111 - -2.1
473,193 + -0.5
473,197 + -1.3
473,197 + +0.7
473,197 + +1.3
473,209 + -1.2
473,209 + +1.0
473,209 + +0.1
473,210 - -0.8
473,212 + -1.7
473,212 + -2.7
473,212 + +0.1
473,213 - -0.6
473,220 + -0.6
473,220 + -1.5
473,220 + +0.3
473,220 + -0.1
473,257 + -1.1
473,263 + +2.1
473,263 + +0.5
473,263 + -2.4
473,298 + EX31_RS19280 0.14 -1.4
473,298 + EX31_RS19280 0.14 -1.2
473,338 - EX31_RS19280 0.21 -0.9
473,420 + EX31_RS19280 0.33 -0.4
473,420 + EX31_RS19280 0.33 -0.8
473,420 + EX31_RS19280 0.33 -0.9
473,422 + EX31_RS19280 0.33 +0.5
473,422 + EX31_RS19280 0.33 -0.3
473,422 + EX31_RS19280 0.33 -2.1
473,422 + EX31_RS19280 0.33 -0.8
473,422 + EX31_RS19280 0.33 -0.3
473,422 + EX31_RS19280 0.33 -0.4
473,423 - EX31_RS19280 0.34 -2.3
473,445 + EX31_RS19280 0.37 -0.6
473,445 + EX31_RS19280 0.37 +0.1
473,497 - EX31_RS19280 0.45 -1.1
473,740 + EX31_RS19280 0.82 -0.9
473,813 + -0.2
473,813 + +2.7
473,868 + +0.1
473,868 + +1.1
473,872 + +0.9
473,872 + +1.1
473,965 + +0.1
473,968 + -1.3
474,021 - +0.9
474,171 - +0.6
474,233 + EX31_RS19285 0.11 -0.2
474,234 - EX31_RS19285 0.11 +1.2
474,234 - EX31_RS19285 0.11 -0.0
474,234 - EX31_RS19285 0.11 -0.3
474,235 + EX31_RS19285 0.11 +0.2
474,236 - EX31_RS19285 0.11 +1.5
474,305 + EX31_RS19285 0.13 -0.5
474,305 + EX31_RS19285 0.13 -0.3
474,306 - EX31_RS19285 0.13 +1.7
474,306 - EX31_RS19285 0.13 -1.9
474,306 - EX31_RS19285 0.13 +0.1
474,308 + EX31_RS19285 0.13 +1.1
474,309 - EX31_RS19285 0.13 -0.1
474,316 + EX31_RS19285 0.13 +2.1
474,316 + EX31_RS19285 0.13 +0.5
474,382 + EX31_RS19285 0.16 -0.0
474,425 + EX31_RS19285 0.17 -1.1
474,425 + EX31_RS19285 0.17 +1.1
474,425 + EX31_RS19285 0.17 +0.2
474,425 + EX31_RS19285 0.17 -0.3
474,425 + EX31_RS19285 0.17 -1.5
474,426 - EX31_RS19285 0.17 -1.4
474,426 - EX31_RS19285 0.17 -0.9
474,426 - EX31_RS19285 0.17 -1.9
474,426 - EX31_RS19285 0.17 -1.2
474,428 + EX31_RS19285 0.17 -0.5
474,428 + EX31_RS19285 0.17 -0.3
474,428 + EX31_RS19285 0.17 +0.3
474,428 + EX31_RS19285 0.17 +0.6
474,429 - EX31_RS19285 0.17 +1.1
474,429 - EX31_RS19285 0.17 +2.6
474,513 - EX31_RS19285 0.20 +0.5
474,533 + EX31_RS19285 0.21 +1.6
474,632 - EX31_RS19285 0.24 +0.5
474,632 - EX31_RS19285 0.24 +0.3
474,632 - EX31_RS19285 0.24 -0.1
474,632 - EX31_RS19285 0.24 +0.2
474,642 + EX31_RS19285 0.25 +0.3
474,642 + EX31_RS19285 0.25 +0.1
474,642 + EX31_RS19285 0.25 -0.3
474,643 - EX31_RS19285 0.25 -1.4
474,643 - EX31_RS19285 0.25 +1.5
474,710 - EX31_RS19285 0.27 -1.4
474,720 - EX31_RS19285 0.28 +0.2
474,729 - EX31_RS19285 0.28 +2.1
474,729 - EX31_RS19285 0.28 -2.0

Or see this region's nucleotide sequence