Strain Fitness in Rahnella sp. WP5 around EX31_RS12120

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12115 and EX31_RS12120 are separated by 268 nucleotidesEX31_RS12120 and EX31_RS12125 are separated by 58 nucleotides EX31_RS12115: EX31_RS12115 - NCS2 family permease, at 89,529 to 90,896 _RS12115 EX31_RS12120: EX31_RS12120 - Na+/H+ antiporter, at 91,165 to 92,814 _RS12120 EX31_RS12125: EX31_RS12125 - LysR family transcriptional regulator, at 92,873 to 93,751 _RS12125 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2 3at 90.223 kb on - strand, within EX31_RS12115at 90.233 kb on - strand, within EX31_RS12115at 90.267 kb on - strand, within EX31_RS12115at 90.400 kb on + strand, within EX31_RS12115at 90.400 kb on + strand, within EX31_RS12115at 90.400 kb on + strand, within EX31_RS12115at 90.401 kb on - strand, within EX31_RS12115at 90.401 kb on - strand, within EX31_RS12115at 90.401 kb on - strand, within EX31_RS12115at 90.504 kb on + strand, within EX31_RS12115at 90.504 kb on + strand, within EX31_RS12115at 90.505 kb on - strand, within EX31_RS12115at 90.506 kb on + strand, within EX31_RS12115at 90.609 kb on + strand, within EX31_RS12115at 90.625 kb on - strand, within EX31_RS12115at 90.625 kb on - strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.648 kb on + strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.649 kb on - strand, within EX31_RS12115at 90.671 kb on + strand, within EX31_RS12115at 90.672 kb on - strand, within EX31_RS12115at 90.733 kb on + strand, within EX31_RS12115at 90.734 kb on - strand, within EX31_RS12115at 90.734 kb on - strand, within EX31_RS12115at 90.734 kb on - strand, within EX31_RS12115at 90.734 kb on - strand, within EX31_RS12115at 90.737 kb on + strand, within EX31_RS12115at 90.737 kb on + strand, within EX31_RS12115at 90.738 kb on - strand, within EX31_RS12115at 90.752 kb on + strand, within EX31_RS12115at 90.770 kb on + strandat 90.770 kb on + strandat 90.770 kb on + strandat 90.770 kb on + strandat 90.770 kb on + strandat 90.770 kb on + strandat 90.770 kb on + strandat 90.771 kb on - strandat 90.771 kb on - strandat 90.771 kb on - strandat 90.771 kb on - strandat 90.771 kb on - strandat 90.857 kb on - strandat 90.862 kb on + strandat 90.940 kb on + strandat 90.940 kb on + strandat 90.940 kb on + strandat 90.943 kb on + strandat 90.943 kb on + strandat 91.048 kb on + strandat 91.048 kb on + strandat 91.066 kb on + strandat 91.066 kb on + strandat 91.067 kb on - strandat 91.067 kb on - strandat 91.067 kb on - strandat 91.088 kb on + strandat 91.088 kb on + strandat 91.088 kb on + strandat 91.088 kb on + strandat 91.089 kb on - strandat 91.089 kb on - strandat 91.089 kb on - strandat 91.089 kb on - strandat 91.089 kb on - strandat 91.091 kb on + strandat 91.091 kb on + strandat 91.092 kb on - strandat 91.092 kb on - strandat 91.092 kb on - strandat 91.092 kb on - strandat 91.092 kb on - strandat 91.092 kb on - strandat 91.141 kb on + strandat 91.156 kb on - strandat 91.180 kb on - strandat 91.180 kb on - strandat 91.259 kb on + strandat 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.477 kb on + strand, within EX31_RS12120at 91.478 kb on - strand, within EX31_RS12120at 91.478 kb on - strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.479 kb on + strand, within EX31_RS12120at 91.480 kb on - strand, within EX31_RS12120at 91.480 kb on - strand, within EX31_RS12120at 91.480 kb on - strand, within EX31_RS12120at 91.480 kb on - strand, within EX31_RS12120at 91.480 kb on - strand, within EX31_RS12120at 91.480 kb on - strand, within EX31_RS12120at 91.712 kb on + strand, within EX31_RS12120at 91.712 kb on + strand, within EX31_RS12120at 91.712 kb on + strand, within EX31_RS12120at 91.712 kb on + strand, within EX31_RS12120at 91.712 kb on + strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.713 kb on - strand, within EX31_RS12120at 91.771 kb on + strand, within EX31_RS12120at 91.771 kb on + strand, within EX31_RS12120at 91.771 kb on + strand, within EX31_RS12120at 91.771 kb on + strand, within EX31_RS12120at 91.771 kb on + strand, within EX31_RS12120at 91.772 kb on - strand, within EX31_RS12120at 91.772 kb on - strand, within EX31_RS12120at 91.772 kb on - strand, within EX31_RS12120at 91.772 kb on - strand, within EX31_RS12120at 91.776 kb on + strand, within EX31_RS12120at 91.776 kb on + strand, within EX31_RS12120at 91.776 kb on + strand, within EX31_RS12120at 91.777 kb on - strand, within EX31_RS12120at 91.777 kb on - strand, within EX31_RS12120at 91.777 kb on - strand, within EX31_RS12120at 91.861 kb on + strand, within EX31_RS12120at 91.861 kb on + strand, within EX31_RS12120at 91.862 kb on - strand, within EX31_RS12120at 91.862 kb on - strand, within EX31_RS12120at 91.878 kb on + strand, within EX31_RS12120at 91.878 kb on + strand, within EX31_RS12120at 91.878 kb on + strand, within EX31_RS12120at 91.879 kb on - strand, within EX31_RS12120at 91.941 kb on + strand, within EX31_RS12120at 91.942 kb on - strand, within EX31_RS12120at 91.948 kb on - strand, within EX31_RS12120at 92.131 kb on - strand, within EX31_RS12120at 92.131 kb on - strand, within EX31_RS12120at 92.135 kb on - strand, within EX31_RS12120at 92.135 kb on - strand, within EX31_RS12120at 92.169 kb on - strand, within EX31_RS12120at 92.230 kb on + strand, within EX31_RS12120at 92.230 kb on + strand, within EX31_RS12120at 92.231 kb on - strand, within EX31_RS12120at 92.231 kb on - strand, within EX31_RS12120at 92.231 kb on - strand, within EX31_RS12120at 92.235 kb on + strand, within EX31_RS12120at 92.235 kb on + strand, within EX31_RS12120at 92.236 kb on - strand, within EX31_RS12120at 92.236 kb on - strand, within EX31_RS12120at 92.236 kb on - strand, within EX31_RS12120at 92.283 kb on + strand, within EX31_RS12120at 92.283 kb on + strand, within EX31_RS12120at 92.284 kb on - strand, within EX31_RS12120at 92.284 kb on - strand, within EX31_RS12120at 92.312 kb on + strand, within EX31_RS12120at 92.348 kb on - strand, within EX31_RS12120at 92.517 kb on + strand, within EX31_RS12120at 92.517 kb on + strand, within EX31_RS12120at 92.517 kb on + strand, within EX31_RS12120at 92.518 kb on - strand, within EX31_RS12120at 92.556 kb on + strand, within EX31_RS12120at 92.557 kb on - strand, within EX31_RS12120at 92.557 kb on - strand, within EX31_RS12120at 92.606 kb on + strand, within EX31_RS12120at 92.616 kb on + strand, within EX31_RS12120at 92.616 kb on + strand, within EX31_RS12120at 92.617 kb on - strand, within EX31_RS12120at 92.713 kb on + strandat 92.714 kb on - strandat 92.714 kb on - strandat 92.780 kb on + strandat 92.781 kb on - strandat 92.812 kb on + strandat 92.812 kb on + strandat 92.812 kb on + strandat 92.813 kb on - strandat 92.813 kb on - strandat 92.813 kb on - strandat 92.813 kb on - strandat 92.813 kb on - strandat 92.824 kb on + strandat 92.875 kb on - strandat 92.928 kb on + strandat 92.928 kb on + strandat 92.928 kb on + strandat 92.928 kb on + strandat 92.929 kb on - strandat 92.929 kb on - strandat 92.929 kb on - strandat 92.929 kb on - strandat 93.004 kb on + strand, within EX31_RS12125at 93.004 kb on + strand, within EX31_RS12125at 93.059 kb on + strand, within EX31_RS12125at 93.059 kb on + strand, within EX31_RS12125at 93.060 kb on - strand, within EX31_RS12125at 93.113 kb on - strand, within EX31_RS12125at 93.128 kb on - strand, within EX31_RS12125at 93.171 kb on + strand, within EX31_RS12125at 93.171 kb on + strand, within EX31_RS12125at 93.171 kb on + strand, within EX31_RS12125at 93.172 kb on - strand, within EX31_RS12125at 93.289 kb on + strand, within EX31_RS12125at 93.290 kb on - strand, within EX31_RS12125at 93.385 kb on + strand, within EX31_RS12125at 93.405 kb on + strand, within EX31_RS12125at 93.406 kb on - strand, within EX31_RS12125at 93.496 kb on + strand, within EX31_RS12125at 93.496 kb on + strand, within EX31_RS12125at 93.497 kb on - strand, within EX31_RS12125at 93.497 kb on - strand, within EX31_RS12125at 93.497 kb on - strand, within EX31_RS12125at 93.497 kb on - strand, within EX31_RS12125at 93.497 kb on - strand, within EX31_RS12125at 93.541 kb on + strand, within EX31_RS12125at 93.558 kb on + strand, within EX31_RS12125at 93.558 kb on + strand, within EX31_RS12125at 93.558 kb on + strand, within EX31_RS12125at 93.559 kb on - strand, within EX31_RS12125at 93.559 kb on - strand, within EX31_RS12125at 93.587 kb on + strand, within EX31_RS12125at 93.587 kb on + strand, within EX31_RS12125at 93.587 kb on + strand, within EX31_RS12125at 93.588 kb on - strand, within EX31_RS12125at 93.729 kb on + strandat 93.730 kb on - strandat 93.730 kb on - strandat 93.730 kb on - strandat 93.734 kb on + strandat 93.734 kb on + strandat 93.734 kb on + strandat 93.735 kb on - strandat 93.735 kb on - strandat 93.735 kb on - strandat 93.739 kb on + strandat 93.739 kb on + strandat 93.739 kb on + strandat 93.740 kb on - strandat 93.784 kb on + strandat 93.791 kb on + strandat 93.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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90,223 - EX31_RS12115 0.51 +1.2
90,233 - EX31_RS12115 0.51 -0.6
90,267 - EX31_RS12115 0.54 -0.3
90,400 + EX31_RS12115 0.64 -1.2
90,400 + EX31_RS12115 0.64 +0.1
90,400 + EX31_RS12115 0.64 -0.3
90,401 - EX31_RS12115 0.64 -0.8
90,401 - EX31_RS12115 0.64 +0.2
90,401 - EX31_RS12115 0.64 +0.8
90,504 + EX31_RS12115 0.71 -2.4
90,504 + EX31_RS12115 0.71 -0.4
90,505 - EX31_RS12115 0.71 -0.5
90,506 + EX31_RS12115 0.71 -2.2
90,609 + EX31_RS12115 0.79 +0.4
90,625 - EX31_RS12115 0.80 -1.1
90,625 - EX31_RS12115 0.80 +0.9
90,648 + EX31_RS12115 0.82 +0.9
90,648 + EX31_RS12115 0.82 +0.6
90,648 + EX31_RS12115 0.82 -1.0
90,648 + EX31_RS12115 0.82 -0.2
90,648 + EX31_RS12115 0.82 -0.1
90,648 + EX31_RS12115 0.82 -0.0
90,648 + EX31_RS12115 0.82 +0.2
90,648 + EX31_RS12115 0.82 +1.0
90,648 + EX31_RS12115 0.82 +0.3
90,648 + EX31_RS12115 0.82 +0.2
90,649 - EX31_RS12115 0.82 +0.9
90,649 - EX31_RS12115 0.82 -0.5
90,649 - EX31_RS12115 0.82 +1.6
90,649 - EX31_RS12115 0.82 -0.3
90,649 - EX31_RS12115 0.82 +0.2
90,649 - EX31_RS12115 0.82 +0.9
90,649 - EX31_RS12115 0.82 +1.3
90,671 + EX31_RS12115 0.83 +0.2
90,672 - EX31_RS12115 0.84 +0.0
90,733 + EX31_RS12115 0.88 +0.0
90,734 - EX31_RS12115 0.88 -0.3
90,734 - EX31_RS12115 0.88 -1.0
90,734 - EX31_RS12115 0.88 +1.6
90,734 - EX31_RS12115 0.88 +0.5
90,737 + EX31_RS12115 0.88 -0.1
90,737 + EX31_RS12115 0.88 +3.3
90,738 - EX31_RS12115 0.88 -1.0
90,752 + EX31_RS12115 0.89 -1.1
90,770 + -1.2
90,770 + +1.4
90,770 + +0.9
90,770 + +0.1
90,770 + -0.2
90,770 + -1.3
90,770 + +0.0
90,771 - -1.1
90,771 - -0.1
90,771 - +0.6
90,771 - -0.8
90,771 - -0.4
90,857 - +0.1
90,862 + -0.8
90,940 + +1.5
90,940 + +0.2
90,940 + +0.0
90,943 + -1.5
90,943 + +0.6
91,048 + +1.0
91,048 + +1.2
91,066 + -1.7
91,066 + +0.6
91,067 - +0.5
91,067 - -0.6
91,067 - -0.1
91,088 + +1.7
91,088 + +0.3
91,088 + -1.0
91,088 + +0.4
91,089 - +1.2
91,089 - +2.7
91,089 - +1.2
91,089 - +0.1
91,089 - +0.6
91,091 + -0.1
91,091 + +0.4
91,092 - +0.4
91,092 - +0.9
91,092 - +0.3
91,092 - -1.6
91,092 - -0.1
91,092 - +0.0
91,141 + -0.7
91,156 - +1.5
91,180 - -1.3
91,180 - +0.6
91,259 + -1.3
91,477 + EX31_RS12120 0.19 +0.4
91,477 + EX31_RS12120 0.19 +0.5
91,477 + EX31_RS12120 0.19 -0.5
91,477 + EX31_RS12120 0.19 +0.0
91,477 + EX31_RS12120 0.19 +0.0
91,477 + EX31_RS12120 0.19 -0.2
91,477 + EX31_RS12120 0.19 -0.1
91,477 + EX31_RS12120 0.19 +0.6
91,478 - EX31_RS12120 0.19 -0.5
91,478 - EX31_RS12120 0.19 -0.3
91,479 + EX31_RS12120 0.19 -0.3
91,479 + EX31_RS12120 0.19 -1.1
91,479 + EX31_RS12120 0.19 -0.5
91,479 + EX31_RS12120 0.19 +0.6
91,479 + EX31_RS12120 0.19 +0.1
91,479 + EX31_RS12120 0.19 -0.5
91,479 + EX31_RS12120 0.19 -0.1
91,479 + EX31_RS12120 0.19 +0.5
91,479 + EX31_RS12120 0.19 -0.5
91,480 - EX31_RS12120 0.19 +0.8
91,480 - EX31_RS12120 0.19 -0.3
91,480 - EX31_RS12120 0.19 -0.1
91,480 - EX31_RS12120 0.19 +0.7
91,480 - EX31_RS12120 0.19 +0.2
91,480 - EX31_RS12120 0.19 +1.5
91,712 + EX31_RS12120 0.33 -0.1
91,712 + EX31_RS12120 0.33 -1.1
91,712 + EX31_RS12120 0.33 -1.3
91,712 + EX31_RS12120 0.33 +0.3
91,712 + EX31_RS12120 0.33 +0.9
91,713 - EX31_RS12120 0.33 -0.3
91,713 - EX31_RS12120 0.33 -0.6
91,713 - EX31_RS12120 0.33 -0.7
91,713 - EX31_RS12120 0.33 +0.8
91,713 - EX31_RS12120 0.33 -0.2
91,713 - EX31_RS12120 0.33 -0.3
91,713 - EX31_RS12120 0.33 -0.2
91,771 + EX31_RS12120 0.37 +0.6
91,771 + EX31_RS12120 0.37 -1.3
91,771 + EX31_RS12120 0.37 +0.4
91,771 + EX31_RS12120 0.37 -0.6
91,771 + EX31_RS12120 0.37 -0.4
91,772 - EX31_RS12120 0.37 +0.1
91,772 - EX31_RS12120 0.37 +1.1
91,772 - EX31_RS12120 0.37 +0.1
91,772 - EX31_RS12120 0.37 -0.6
91,776 + EX31_RS12120 0.37 -1.5
91,776 + EX31_RS12120 0.37 -0.2
91,776 + EX31_RS12120 0.37 +0.2
91,777 - EX31_RS12120 0.37 +1.7
91,777 - EX31_RS12120 0.37 +0.7
91,777 - EX31_RS12120 0.37 +0.5
91,861 + EX31_RS12120 0.42 +0.8
91,861 + EX31_RS12120 0.42 -0.7
91,862 - EX31_RS12120 0.42 -2.2
91,862 - EX31_RS12120 0.42 +1.5
91,878 + EX31_RS12120 0.43 +2.5
91,878 + EX31_RS12120 0.43 -0.4
91,878 + EX31_RS12120 0.43 +1.0
91,879 - EX31_RS12120 0.43 -0.7
91,941 + EX31_RS12120 0.47 +1.2
91,942 - EX31_RS12120 0.47 -1.1
91,948 - EX31_RS12120 0.47 -1.6
92,131 - EX31_RS12120 0.59 +0.1
92,131 - EX31_RS12120 0.59 -1.0
92,135 - EX31_RS12120 0.59 +0.4
92,135 - EX31_RS12120 0.59 -0.1
92,169 - EX31_RS12120 0.61 +2.0
92,230 + EX31_RS12120 0.65 +1.5
92,230 + EX31_RS12120 0.65 +0.1
92,231 - EX31_RS12120 0.65 +0.8
92,231 - EX31_RS12120 0.65 +0.8
92,231 - EX31_RS12120 0.65 -0.2
92,235 + EX31_RS12120 0.65 +0.6
92,235 + EX31_RS12120 0.65 +0.9
92,236 - EX31_RS12120 0.65 +0.0
92,236 - EX31_RS12120 0.65 -0.4
92,236 - EX31_RS12120 0.65 -0.7
92,283 + EX31_RS12120 0.68 +0.3
92,283 + EX31_RS12120 0.68 -0.6
92,284 - EX31_RS12120 0.68 -0.0
92,284 - EX31_RS12120 0.68 +0.1
92,312 + EX31_RS12120 0.70 +1.1
92,348 - EX31_RS12120 0.72 +0.2
92,517 + EX31_RS12120 0.82 +0.2
92,517 + EX31_RS12120 0.82 +1.3
92,517 + EX31_RS12120 0.82 +0.2
92,518 - EX31_RS12120 0.82 +0.3
92,556 + EX31_RS12120 0.84 -0.3
92,557 - EX31_RS12120 0.84 -0.5
92,557 - EX31_RS12120 0.84 +0.5
92,606 + EX31_RS12120 0.87 -1.2
92,616 + EX31_RS12120 0.88 +0.2
92,616 + EX31_RS12120 0.88 -0.2
92,617 - EX31_RS12120 0.88 -0.6
92,713 + +0.7
92,714 - -0.9
92,714 - -1.2
92,780 + +0.2
92,781 - -2.3
92,812 + +3.0
92,812 + +1.1
92,812 + +0.8
92,813 - +0.8
92,813 - +1.4
92,813 - +0.2
92,813 - -0.7
92,813 - +1.2
92,824 + -1.1
92,875 - +2.2
92,928 + -1.9
92,928 + -0.5
92,928 + -0.1
92,928 + +0.3
92,929 - -0.3
92,929 - +0.0
92,929 - +1.0
92,929 - +0.3
93,004 + EX31_RS12125 0.15 +0.1
93,004 + EX31_RS12125 0.15 +0.3
93,059 + EX31_RS12125 0.21 -1.3
93,059 + EX31_RS12125 0.21 +0.7
93,060 - EX31_RS12125 0.21 +1.3
93,113 - EX31_RS12125 0.27 -0.2
93,128 - EX31_RS12125 0.29 -0.7
93,171 + EX31_RS12125 0.34 -0.4
93,171 + EX31_RS12125 0.34 +0.4
93,171 + EX31_RS12125 0.34 -1.4
93,172 - EX31_RS12125 0.34 -2.0
93,289 + EX31_RS12125 0.47 +1.5
93,290 - EX31_RS12125 0.47 +0.3
93,385 + EX31_RS12125 0.58 -0.4
93,405 + EX31_RS12125 0.61 -1.6
93,406 - EX31_RS12125 0.61 +0.2
93,496 + EX31_RS12125 0.71 +0.5
93,496 + EX31_RS12125 0.71 +0.1
93,497 - EX31_RS12125 0.71 +0.5
93,497 - EX31_RS12125 0.71 +1.1
93,497 - EX31_RS12125 0.71 -0.7
93,497 - EX31_RS12125 0.71 -0.1
93,497 - EX31_RS12125 0.71 -0.2
93,541 + EX31_RS12125 0.76 -1.3
93,558 + EX31_RS12125 0.78 -0.3
93,558 + EX31_RS12125 0.78 +0.0
93,558 + EX31_RS12125 0.78 +0.8
93,559 - EX31_RS12125 0.78 -0.4
93,559 - EX31_RS12125 0.78 -1.2
93,587 + EX31_RS12125 0.81 +0.5
93,587 + EX31_RS12125 0.81 +0.7
93,587 + EX31_RS12125 0.81 +0.1
93,588 - EX31_RS12125 0.81 +0.9
93,729 + +0.9
93,730 - +0.7
93,730 - -0.8
93,730 - -1.2
93,734 + +0.2
93,734 + -0.7
93,734 + -0.2
93,735 - +0.0
93,735 - +1.0
93,735 - +1.0
93,739 + -0.2
93,739 + +0.4
93,739 + +0.2
93,740 - +1.1
93,784 + +1.4
93,791 + -1.4
93,792 - -0.6

Or see this region's nucleotide sequence