Strain Fitness in Rahnella sp. WP5 around EX31_RS12005

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12000 and EX31_RS12005 are separated by 100 nucleotidesEX31_RS12005 and EX31_RS12010 are separated by 206 nucleotides EX31_RS12000: EX31_RS12000 - amidohydrolase family protein, at 63,382 to 64,800 _RS12000 EX31_RS12005: EX31_RS12005 - LysR family transcriptional regulator, at 64,901 to 65,755 _RS12005 EX31_RS12010: EX31_RS12010 - cysteine protease, at 65,962 to 66,651 _RS12010 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 63.902 kb on + strand, within EX31_RS12000at 63.902 kb on + strand, within EX31_RS12000at 63.902 kb on + strand, within EX31_RS12000at 63.902 kb on + strand, within EX31_RS12000at 63.902 kb on + strand, within EX31_RS12000at 63.902 kb on + strand, within EX31_RS12000at 63.902 kb on + strand, within EX31_RS12000at 63.903 kb on - strand, within EX31_RS12000at 63.903 kb on - strand, within EX31_RS12000at 63.903 kb on - strand, within EX31_RS12000at 63.903 kb on - strand, within EX31_RS12000at 63.903 kb on - strand, within EX31_RS12000at 63.903 kb on - strand, within EX31_RS12000at 63.949 kb on - strand, within EX31_RS12000at 63.949 kb on - strand, within EX31_RS12000at 63.949 kb on - strand, within EX31_RS12000at 63.949 kb on - strand, within EX31_RS12000at 63.961 kb on - strand, within EX31_RS12000at 64.046 kb on + strand, within EX31_RS12000at 64.046 kb on + strand, within EX31_RS12000at 64.046 kb on + strand, within EX31_RS12000at 64.046 kb on + strand, within EX31_RS12000at 64.046 kb on + strand, within EX31_RS12000at 64.046 kb on + strand, within EX31_RS12000at 64.047 kb on - strand, within EX31_RS12000at 64.047 kb on - strand, within EX31_RS12000at 64.047 kb on - strand, within EX31_RS12000at 64.292 kb on - strand, within EX31_RS12000at 64.382 kb on + strand, within EX31_RS12000at 64.382 kb on + strand, within EX31_RS12000at 64.382 kb on + strand, within EX31_RS12000at 64.404 kb on + strand, within EX31_RS12000at 64.404 kb on + strand, within EX31_RS12000at 64.404 kb on + strand, within EX31_RS12000at 64.404 kb on + strand, within EX31_RS12000at 64.404 kb on + strand, within EX31_RS12000at 64.404 kb on + strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.405 kb on - strand, within EX31_RS12000at 64.435 kb on + strand, within EX31_RS12000at 64.435 kb on + strand, within EX31_RS12000at 64.435 kb on + strand, within EX31_RS12000at 64.435 kb on + strand, within EX31_RS12000at 64.435 kb on + strand, within EX31_RS12000at 64.435 kb on + strand, within EX31_RS12000at 64.436 kb on - strand, within EX31_RS12000at 64.436 kb on - strand, within EX31_RS12000at 64.436 kb on - strand, within EX31_RS12000at 64.529 kb on + strand, within EX31_RS12000at 64.529 kb on + strand, within EX31_RS12000at 64.530 kb on - strand, within EX31_RS12000at 64.530 kb on - strand, within EX31_RS12000at 64.530 kb on - strand, within EX31_RS12000at 64.607 kb on + strand, within EX31_RS12000at 64.695 kb on + strandat 64.695 kb on + strandat 64.696 kb on - strandat 64.795 kb on - strandat 64.838 kb on + strandat 64.838 kb on + strandat 64.902 kb on + strandat 64.906 kb on + strandat 64.906 kb on + strandat 64.906 kb on + strandat 64.907 kb on - strandat 64.907 kb on - strandat 64.907 kb on - strandat 65.063 kb on + strand, within EX31_RS12005at 65.064 kb on - strand, within EX31_RS12005at 65.124 kb on + strand, within EX31_RS12005at 65.124 kb on + strand, within EX31_RS12005at 65.131 kb on + strand, within EX31_RS12005at 65.140 kb on + strand, within EX31_RS12005at 65.140 kb on + strand, within EX31_RS12005at 65.141 kb on - strand, within EX31_RS12005at 65.141 kb on - strand, within EX31_RS12005at 65.141 kb on - strand, within EX31_RS12005at 65.141 kb on - strand, within EX31_RS12005at 65.182 kb on - strand, within EX31_RS12005at 65.182 kb on - strand, within EX31_RS12005at 65.390 kb on - strand, within EX31_RS12005at 65.469 kb on - strand, within EX31_RS12005at 65.469 kb on - strand, within EX31_RS12005at 65.661 kb on + strand, within EX31_RS12005at 65.661 kb on + strand, within EX31_RS12005at 65.661 kb on + strand, within EX31_RS12005at 65.662 kb on - strand, within EX31_RS12005at 65.662 kb on - strand, within EX31_RS12005at 65.662 kb on - strand, within EX31_RS12005at 65.662 kb on - strand, within EX31_RS12005at 65.683 kb on + strandat 65.684 kb on - strandat 65.716 kb on + strandat 65.716 kb on + strandat 65.717 kb on - strandat 65.799 kb on - strandat 65.807 kb on - strandat 65.807 kb on - strandat 65.872 kb on - strandat 65.885 kb on + strandat 65.995 kb on + strandat 65.997 kb on + strandat 66.006 kb on - strandat 66.008 kb on - strandat 66.008 kb on - strandat 66.009 kb on + strandat 66.012 kb on + strandat 66.101 kb on - strand, within EX31_RS12010at 66.128 kb on - strand, within EX31_RS12010at 66.169 kb on + strand, within EX31_RS12010at 66.170 kb on - strand, within EX31_RS12010at 66.170 kb on - strand, within EX31_RS12010at 66.208 kb on + strand, within EX31_RS12010at 66.208 kb on + strand, within EX31_RS12010at 66.209 kb on - strand, within EX31_RS12010at 66.209 kb on - strand, within EX31_RS12010at 66.228 kb on + strand, within EX31_RS12010at 66.228 kb on + strand, within EX31_RS12010at 66.467 kb on + strand, within EX31_RS12010at 66.467 kb on + strand, within EX31_RS12010at 66.467 kb on + strand, within EX31_RS12010at 66.547 kb on - strand, within EX31_RS12010at 66.609 kb on + strandat 66.716 kb on + strandat 66.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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63,902 + EX31_RS12000 0.37 +0.8
63,902 + EX31_RS12000 0.37 -0.6
63,902 + EX31_RS12000 0.37 +0.2
63,902 + EX31_RS12000 0.37 +0.7
63,902 + EX31_RS12000 0.37 -0.1
63,902 + EX31_RS12000 0.37 -0.2
63,902 + EX31_RS12000 0.37 +0.6
63,903 - EX31_RS12000 0.37 -1.0
63,903 - EX31_RS12000 0.37 -1.5
63,903 - EX31_RS12000 0.37 +0.3
63,903 - EX31_RS12000 0.37 +0.7
63,903 - EX31_RS12000 0.37 +0.4
63,903 - EX31_RS12000 0.37 -0.1
63,949 - EX31_RS12000 0.40 +0.5
63,949 - EX31_RS12000 0.40 +2.1
63,949 - EX31_RS12000 0.40 -0.4
63,949 - EX31_RS12000 0.40 -0.3
63,961 - EX31_RS12000 0.41 +0.4
64,046 + EX31_RS12000 0.47 -0.4
64,046 + EX31_RS12000 0.47 -0.1
64,046 + EX31_RS12000 0.47 +1.9
64,046 + EX31_RS12000 0.47 +0.2
64,046 + EX31_RS12000 0.47 -2.8
64,046 + EX31_RS12000 0.47 +0.4
64,047 - EX31_RS12000 0.47 +0.7
64,047 - EX31_RS12000 0.47 +0.1
64,047 - EX31_RS12000 0.47 -0.2
64,292 - EX31_RS12000 0.64 +0.1
64,382 + EX31_RS12000 0.70 -0.6
64,382 + EX31_RS12000 0.70 +0.3
64,382 + EX31_RS12000 0.70 -1.0
64,404 + EX31_RS12000 0.72 +0.6
64,404 + EX31_RS12000 0.72 +0.6
64,404 + EX31_RS12000 0.72 +0.1
64,404 + EX31_RS12000 0.72 -0.2
64,404 + EX31_RS12000 0.72 -0.5
64,404 + EX31_RS12000 0.72 -0.2
64,405 - EX31_RS12000 0.72 -0.4
64,405 - EX31_RS12000 0.72 +0.5
64,405 - EX31_RS12000 0.72 +0.5
64,405 - EX31_RS12000 0.72 +0.1
64,405 - EX31_RS12000 0.72 -0.2
64,405 - EX31_RS12000 0.72 -0.1
64,405 - EX31_RS12000 0.72 +0.3
64,405 - EX31_RS12000 0.72 -1.7
64,435 + EX31_RS12000 0.74 -0.9
64,435 + EX31_RS12000 0.74 +0.5
64,435 + EX31_RS12000 0.74 +3.2
64,435 + EX31_RS12000 0.74 +0.9
64,435 + EX31_RS12000 0.74 -2.0
64,435 + EX31_RS12000 0.74 +0.3
64,436 - EX31_RS12000 0.74 +2.2
64,436 - EX31_RS12000 0.74 +0.3
64,436 - EX31_RS12000 0.74 +0.8
64,529 + EX31_RS12000 0.81 +0.1
64,529 + EX31_RS12000 0.81 +1.1
64,530 - EX31_RS12000 0.81 +0.4
64,530 - EX31_RS12000 0.81 +0.2
64,530 - EX31_RS12000 0.81 +0.3
64,607 + EX31_RS12000 0.86 +0.6
64,695 + -1.5
64,695 + -0.7
64,696 - +0.7
64,795 - +0.6
64,838 + -1.9
64,838 + +0.9
64,902 + +0.9
64,906 + -0.2
64,906 + -0.4
64,906 + +1.5
64,907 - +0.3
64,907 - +0.1
64,907 - +0.2
65,063 + EX31_RS12005 0.19 +0.2
65,064 - EX31_RS12005 0.19 +0.5
65,124 + EX31_RS12005 0.26 +0.2
65,124 + EX31_RS12005 0.26 +1.2
65,131 + EX31_RS12005 0.27 -3.2
65,140 + EX31_RS12005 0.28 +1.3
65,140 + EX31_RS12005 0.28 -0.5
65,141 - EX31_RS12005 0.28 +0.4
65,141 - EX31_RS12005 0.28 -0.1
65,141 - EX31_RS12005 0.28 -0.1
65,141 - EX31_RS12005 0.28 -1.0
65,182 - EX31_RS12005 0.33 -0.8
65,182 - EX31_RS12005 0.33 -0.0
65,390 - EX31_RS12005 0.57 +0.3
65,469 - EX31_RS12005 0.66 -0.7
65,469 - EX31_RS12005 0.66 +0.3
65,661 + EX31_RS12005 0.89 +2.0
65,661 + EX31_RS12005 0.89 -0.1
65,661 + EX31_RS12005 0.89 -0.6
65,662 - EX31_RS12005 0.89 -0.7
65,662 - EX31_RS12005 0.89 -1.1
65,662 - EX31_RS12005 0.89 -0.8
65,662 - EX31_RS12005 0.89 +0.1
65,683 + -0.2
65,684 - -0.3
65,716 + -0.9
65,716 + +1.0
65,717 - +0.7
65,799 - +0.7
65,807 - -0.7
65,807 - -1.8
65,872 - +1.1
65,885 + -0.5
65,995 + -0.4
65,997 + -0.6
66,006 - +0.2
66,008 - +1.0
66,008 - +0.1
66,009 + +0.5
66,012 + +0.1
66,101 - EX31_RS12010 0.20 +1.1
66,128 - EX31_RS12010 0.24 +0.1
66,169 + EX31_RS12010 0.30 +1.2
66,170 - EX31_RS12010 0.30 +0.1
66,170 - EX31_RS12010 0.30 +0.1
66,208 + EX31_RS12010 0.36 +0.1
66,208 + EX31_RS12010 0.36 +0.8
66,209 - EX31_RS12010 0.36 +0.8
66,209 - EX31_RS12010 0.36 -0.3
66,228 + EX31_RS12010 0.39 -0.3
66,228 + EX31_RS12010 0.39 +1.0
66,467 + EX31_RS12010 0.73 +0.3
66,467 + EX31_RS12010 0.73 +0.4
66,467 + EX31_RS12010 0.73 +1.7
66,547 - EX31_RS12010 0.85 +0.4
66,609 + +0.2
66,716 + -1.3
66,716 + -0.2

Or see this region's nucleotide sequence