Experiment: L-Serine (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09760 and EX31_RS09765 are separated by 381 nucleotides EX31_RS09765 and EX31_RS09770 are separated by 91 nucleotides
EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799
_RS09760
EX31_RS09765: EX31_RS09765 - xylose isomerase, at 158,181 to 159,500
_RS09765
EX31_RS09770: EX31_RS09770 - xylulokinase, at 159,592 to 161,043
_RS09770
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.354 kb on + strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.430 kb on - strand, within EX31_RS09760 at 157.430 kb on - strand, within EX31_RS09760 at 157.466 kb on - strand, within EX31_RS09760 at 157.531 kb on + strand, within EX31_RS09760 at 157.571 kb on + strand, within EX31_RS09760 at 157.814 kb on + strand at 157.814 kb on + strand at 157.816 kb on + strand at 157.822 kb on + strand at 157.823 kb on - strand at 157.823 kb on - strand at 157.826 kb on + strand at 157.827 kb on - strand at 157.850 kb on + strand at 157.959 kb on + strand at 157.960 kb on - strand at 157.970 kb on + strand at 157.971 kb on - strand at 157.971 kb on - strand at 158.043 kb on + strand at 158.070 kb on + strand at 158.070 kb on + strand at 158.131 kb on + strand at 158.238 kb on - strand at 158.259 kb on + strand at 158.259 kb on + strand at 158.260 kb on - strand at 158.260 kb on - strand at 158.260 kb on - strand at 158.423 kb on + strand, within EX31_RS09765 at 158.469 kb on + strand, within EX31_RS09765 at 158.470 kb on - strand, within EX31_RS09765 at 158.473 kb on - strand, within EX31_RS09765 at 158.473 kb on - strand, within EX31_RS09765 at 158.523 kb on + strand, within EX31_RS09765 at 158.531 kb on + strand, within EX31_RS09765 at 158.555 kb on - strand, within EX31_RS09765 at 158.601 kb on - strand, within EX31_RS09765 at 158.601 kb on - strand, within EX31_RS09765 at 158.601 kb on - strand, within EX31_RS09765 at 158.654 kb on + strand, within EX31_RS09765 at 158.733 kb on + strand, within EX31_RS09765 at 158.733 kb on + strand, within EX31_RS09765 at 158.733 kb on + strand, within EX31_RS09765 at 158.778 kb on - strand, within EX31_RS09765 at 158.778 kb on - strand, within EX31_RS09765 at 158.880 kb on - strand, within EX31_RS09765 at 158.907 kb on + strand, within EX31_RS09765 at 158.907 kb on + strand, within EX31_RS09765 at 158.907 kb on + strand, within EX31_RS09765 at 158.907 kb on + strand, within EX31_RS09765 at 158.907 kb on + strand, within EX31_RS09765 at 158.908 kb on - strand, within EX31_RS09765 at 158.908 kb on - strand, within EX31_RS09765 at 158.913 kb on + strand, within EX31_RS09765 at 158.913 kb on + strand, within EX31_RS09765 at 158.913 kb on + strand, within EX31_RS09765 at 158.914 kb on - strand, within EX31_RS09765 at 158.931 kb on + strand, within EX31_RS09765 at 158.931 kb on + strand, within EX31_RS09765 at 159.147 kb on + strand, within EX31_RS09765 at 159.147 kb on + strand, within EX31_RS09765 at 159.147 kb on + strand, within EX31_RS09765 at 159.148 kb on - strand, within EX31_RS09765 at 159.148 kb on - strand, within EX31_RS09765 at 159.148 kb on - strand, within EX31_RS09765 at 159.228 kb on + strand, within EX31_RS09765 at 159.228 kb on + strand, within EX31_RS09765 at 159.228 kb on + strand, within EX31_RS09765 at 159.228 kb on + strand, within EX31_RS09765 at 159.228 kb on + strand, within EX31_RS09765 at 159.229 kb on - strand, within EX31_RS09765 at 159.229 kb on - strand, within EX31_RS09765 at 159.229 kb on - strand, within EX31_RS09765 at 159.229 kb on - strand, within EX31_RS09765 at 159.240 kb on + strand, within EX31_RS09765 at 159.339 kb on + strand, within EX31_RS09765 at 159.340 kb on - strand, within EX31_RS09765 at 159.411 kb on + strand at 159.511 kb on + strand at 159.580 kb on + strand at 159.591 kb on + strand at 159.591 kb on + strand at 159.591 kb on + strand at 159.591 kb on + strand at 159.591 kb on + strand at 159.592 kb on - strand at 159.592 kb on - strand at 159.592 kb on - strand at 159.596 kb on - strand at 159.605 kb on + strand at 159.638 kb on + strand at 159.794 kb on + strand, within EX31_RS09770 at 159.795 kb on - strand, within EX31_RS09770 at 159.795 kb on - strand, within EX31_RS09770 at 159.857 kb on + strand, within EX31_RS09770 at 159.860 kb on + strand, within EX31_RS09770 at 159.860 kb on + strand, within EX31_RS09770 at 159.861 kb on - strand, within EX31_RS09770 at 160.054 kb on + strand, within EX31_RS09770 at 160.055 kb on - strand, within EX31_RS09770 at 160.092 kb on + strand, within EX31_RS09770 at 160.092 kb on + strand, within EX31_RS09770 at 160.093 kb on - strand, within EX31_RS09770 at 160.093 kb on - strand, within EX31_RS09770 at 160.132 kb on - strand, within EX31_RS09770 at 160.323 kb on + strand, within EX31_RS09770 at 160.324 kb on - strand, within EX31_RS09770 at 160.344 kb on - strand, within EX31_RS09770 at 160.367 kb on - strand, within EX31_RS09770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking remove 157,354 + EX31_RS09760 0.55 -1.0 157,354 + EX31_RS09760 0.55 +1.0 157,354 + EX31_RS09760 0.55 +0.9 157,430 - EX31_RS09760 0.63 -0.0 157,430 - EX31_RS09760 0.63 -1.2 157,466 - EX31_RS09760 0.66 +0.6 157,531 + EX31_RS09760 0.73 +0.1 157,571 + EX31_RS09760 0.77 +1.2 157,814 + +1.6 157,814 + +0.3 157,816 + +1.9 157,822 + -1.0 157,823 - +0.0 157,823 - +0.2 157,826 + -0.4 157,827 - -0.1 157,850 + +0.6 157,959 + +1.3 157,960 - +0.7 157,970 + +0.4 157,971 - -2.2 157,971 - +1.0 158,043 + +2.2 158,070 + -0.5 158,070 + +1.4 158,131 + +0.5 158,238 - -2.5 158,259 + +1.9 158,259 + -0.6 158,260 - +0.2 158,260 - +0.9 158,260 - -0.4 158,423 + EX31_RS09765 0.18 +0.8 158,469 + EX31_RS09765 0.22 +0.8 158,470 - EX31_RS09765 0.22 -2.3 158,473 - EX31_RS09765 0.22 -1.8 158,473 - EX31_RS09765 0.22 +0.6 158,523 + EX31_RS09765 0.26 +0.2 158,531 + EX31_RS09765 0.27 -0.2 158,555 - EX31_RS09765 0.28 +1.0 158,601 - EX31_RS09765 0.32 +0.6 158,601 - EX31_RS09765 0.32 +0.1 158,601 - EX31_RS09765 0.32 +0.2 158,654 + EX31_RS09765 0.36 -2.3 158,733 + EX31_RS09765 0.42 +0.0 158,733 + EX31_RS09765 0.42 -0.1 158,733 + EX31_RS09765 0.42 -2.1 158,778 - EX31_RS09765 0.45 -1.4 158,778 - EX31_RS09765 0.45 +0.8 158,880 - EX31_RS09765 0.53 +0.6 158,907 + EX31_RS09765 0.55 -0.4 158,907 + EX31_RS09765 0.55 -0.2 158,907 + EX31_RS09765 0.55 -0.7 158,907 + EX31_RS09765 0.55 -2.1 158,907 + EX31_RS09765 0.55 -0.7 158,908 - EX31_RS09765 0.55 +0.0 158,908 - EX31_RS09765 0.55 +0.0 158,913 + EX31_RS09765 0.55 +1.0 158,913 + EX31_RS09765 0.55 +0.4 158,913 + EX31_RS09765 0.55 -0.7 158,914 - EX31_RS09765 0.56 +0.6 158,931 + EX31_RS09765 0.57 -0.7 158,931 + EX31_RS09765 0.57 -0.2 159,147 + EX31_RS09765 0.73 -1.8 159,147 + EX31_RS09765 0.73 -1.8 159,147 + EX31_RS09765 0.73 -0.4 159,148 - EX31_RS09765 0.73 +2.0 159,148 - EX31_RS09765 0.73 +0.6 159,148 - EX31_RS09765 0.73 -0.7 159,228 + EX31_RS09765 0.79 -1.8 159,228 + EX31_RS09765 0.79 -2.5 159,228 + EX31_RS09765 0.79 -0.0 159,228 + EX31_RS09765 0.79 -0.2 159,228 + EX31_RS09765 0.79 +1.8 159,229 - EX31_RS09765 0.79 -0.7 159,229 - EX31_RS09765 0.79 +2.2 159,229 - EX31_RS09765 0.79 +1.9 159,229 - EX31_RS09765 0.79 +1.6 159,240 + EX31_RS09765 0.80 +1.6 159,339 + EX31_RS09765 0.88 -2.3 159,340 - EX31_RS09765 0.88 -0.1 159,411 + -1.0 159,511 + +0.3 159,580 + +0.7 159,591 + +0.1 159,591 + -0.1 159,591 + +1.2 159,591 + +0.9 159,591 + +0.5 159,592 - +1.0 159,592 - -0.7 159,592 - +0.4 159,596 - -0.5 159,605 + -0.4 159,638 + +1.0 159,794 + EX31_RS09770 0.14 +0.5 159,795 - EX31_RS09770 0.14 -2.5 159,795 - EX31_RS09770 0.14 +0.2 159,857 + EX31_RS09770 0.18 -0.0 159,860 + EX31_RS09770 0.18 +0.3 159,860 + EX31_RS09770 0.18 +0.1 159,861 - EX31_RS09770 0.19 +0.0 160,054 + EX31_RS09770 0.32 +1.2 160,055 - EX31_RS09770 0.32 +0.0 160,092 + EX31_RS09770 0.34 -1.5 160,092 + EX31_RS09770 0.34 +0.8 160,093 - EX31_RS09770 0.35 +0.2 160,093 - EX31_RS09770 0.35 -0.1 160,132 - EX31_RS09770 0.37 +1.3 160,323 + EX31_RS09770 0.50 -1.8 160,324 - EX31_RS09770 0.50 +0.0 160,344 - EX31_RS09770 0.52 -0.8 160,367 - EX31_RS09770 0.53 +0.5
Or see this region's nucleotide sequence