Strain Fitness in Rahnella sp. WP5 around EX31_RS02565

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02550 and EX31_RS02555 overlap by 4 nucleotidesEX31_RS02555 and EX31_RS02560 overlap by 8 nucleotidesEX31_RS02560 and EX31_RS02565 overlap by 26 nucleotidesEX31_RS02565 and EX31_RS02570 are separated by 181 nucleotides EX31_RS02550: EX31_RS02550 - MATE family efflux transporter, at 541,671 to 543,023 _RS02550 EX31_RS02555: EX31_RS02555 - hypothetical protein, at 543,020 to 543,661 _RS02555 EX31_RS02560: EX31_RS02560 - hypothetical protein, at 543,654 to 543,914 _RS02560 EX31_RS02565: EX31_RS02565 - 3-oxoacyl-ACP synthase, at 543,889 to 544,848 _RS02565 EX31_RS02570: EX31_RS02570 - ABC transporter ATP-binding protein, at 545,030 to 546,829 _RS02570 Position (kb) 543 544 545Strain fitness (log2 ratio) -2 -1 0 1 2at 543.017 kb on + strandat 543.017 kb on + strandat 543.018 kb on - strandat 543.018 kb on - strandat 543.023 kb on + strandat 543.109 kb on - strand, within EX31_RS02555at 543.109 kb on - strand, within EX31_RS02555at 543.134 kb on + strand, within EX31_RS02555at 543.139 kb on - strand, within EX31_RS02555at 543.217 kb on - strand, within EX31_RS02555at 543.217 kb on - strand, within EX31_RS02555at 543.217 kb on - strand, within EX31_RS02555at 543.229 kb on + strand, within EX31_RS02555at 543.300 kb on - strand, within EX31_RS02555at 543.481 kb on + strand, within EX31_RS02555at 543.482 kb on - strand, within EX31_RS02555at 543.702 kb on - strand, within EX31_RS02560at 543.802 kb on - strand, within EX31_RS02560at 543.928 kb on - strandat 543.951 kb on + strandat 544.075 kb on - strand, within EX31_RS02565at 544.166 kb on - strand, within EX31_RS02565at 544.167 kb on + strand, within EX31_RS02565at 544.221 kb on - strand, within EX31_RS02565at 544.399 kb on - strand, within EX31_RS02565at 544.516 kb on - strand, within EX31_RS02565at 544.692 kb on + strand, within EX31_RS02565at 544.734 kb on - strand, within EX31_RS02565at 544.788 kb on + strandat 544.810 kb on - strandat 544.836 kb on + strandat 544.848 kb on + strandat 544.849 kb on - strandat 544.849 kb on - strandat 544.849 kb on - strandat 544.851 kb on - strandat 544.867 kb on - strandat 544.979 kb on + strandat 544.980 kb on - strandat 545.033 kb on + strandat 545.033 kb on + strandat 545.034 kb on - strandat 545.088 kb on + strandat 545.088 kb on + strandat 545.089 kb on - strandat 545.193 kb on + strandat 545.256 kb on + strand, within EX31_RS02570at 545.256 kb on + strand, within EX31_RS02570at 545.256 kb on + strand, within EX31_RS02570at 545.256 kb on + strand, within EX31_RS02570at 545.257 kb on - strand, within EX31_RS02570at 545.257 kb on - strand, within EX31_RS02570at 545.257 kb on - strand, within EX31_RS02570at 545.257 kb on - strand, within EX31_RS02570at 545.257 kb on - strand, within EX31_RS02570at 545.257 kb on - strand, within EX31_RS02570at 545.319 kb on + strand, within EX31_RS02570at 545.455 kb on + strand, within EX31_RS02570at 545.456 kb on - strand, within EX31_RS02570at 545.503 kb on + strand, within EX31_RS02570at 545.582 kb on + strand, within EX31_RS02570at 545.757 kb on - strand, within EX31_RS02570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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543,017 + +0.3
543,017 + +1.9
543,018 - -0.1
543,018 - -0.9
543,023 + -1.1
543,109 - EX31_RS02555 0.14 -0.5
543,109 - EX31_RS02555 0.14 +0.4
543,134 + EX31_RS02555 0.18 -0.3
543,139 - EX31_RS02555 0.19 -0.3
543,217 - EX31_RS02555 0.31 +1.9
543,217 - EX31_RS02555 0.31 +0.1
543,217 - EX31_RS02555 0.31 -2.3
543,229 + EX31_RS02555 0.33 -0.7
543,300 - EX31_RS02555 0.44 -1.5
543,481 + EX31_RS02555 0.72 -0.3
543,482 - EX31_RS02555 0.72 +1.4
543,702 - EX31_RS02560 0.18 +2.1
543,802 - EX31_RS02560 0.57 +0.7
543,928 - +0.4
543,951 + -1.2
544,075 - EX31_RS02565 0.19 +0.1
544,166 - EX31_RS02565 0.29 -0.7
544,167 + EX31_RS02565 0.29 -0.6
544,221 - EX31_RS02565 0.35 -0.7
544,399 - EX31_RS02565 0.53 -2.2
544,516 - EX31_RS02565 0.65 +2.3
544,692 + EX31_RS02565 0.84 -1.9
544,734 - EX31_RS02565 0.88 -1.9
544,788 + +1.1
544,810 - -1.6
544,836 + -0.2
544,848 + +0.9
544,849 - +0.5
544,849 - +0.7
544,849 - +0.7
544,851 - -1.8
544,867 - -0.5
544,979 + +1.1
544,980 - +1.6
545,033 + -1.4
545,033 + +0.7
545,034 - +2.1
545,088 + +0.9
545,088 + -0.4
545,089 - +0.5
545,193 + +1.5
545,256 + EX31_RS02570 0.13 +0.4
545,256 + EX31_RS02570 0.13 -0.8
545,256 + EX31_RS02570 0.13 +0.6
545,256 + EX31_RS02570 0.13 +0.7
545,257 - EX31_RS02570 0.13 -0.2
545,257 - EX31_RS02570 0.13 +0.8
545,257 - EX31_RS02570 0.13 +0.0
545,257 - EX31_RS02570 0.13 -2.1
545,257 - EX31_RS02570 0.13 -0.6
545,257 - EX31_RS02570 0.13 -2.1
545,319 + EX31_RS02570 0.16 -0.6
545,455 + EX31_RS02570 0.24 +1.9
545,456 - EX31_RS02570 0.24 -0.2
545,503 + EX31_RS02570 0.26 +1.9
545,582 + EX31_RS02570 0.31 +1.3
545,757 - EX31_RS02570 0.40 -1.1

Or see this region's nucleotide sequence