Strain Fitness in Rahnella sp. WP5 around EX31_RS01160

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01155 and EX31_RS01160 are separated by 76 nucleotidesEX31_RS01160 and EX31_RS01165 are separated by 190 nucleotides EX31_RS01155: EX31_RS01155 - AEC family transporter, at 252,704 to 253,648 _RS01155 EX31_RS01160: EX31_RS01160 - fumarate hydratase, at 253,725 to 255,371 _RS01160 EX31_RS01165: EX31_RS01165 - anion permease, at 255,562 to 257,073 _RS01165 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 252.843 kb on + strand, within EX31_RS01155at 252.844 kb on - strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.865 kb on - strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.282 kb on + strand, within EX31_RS01155at 253.283 kb on - strand, within EX31_RS01155at 253.399 kb on + strand, within EX31_RS01155at 253.399 kb on + strand, within EX31_RS01155at 253.562 kb on + strandat 253.562 kb on + strandat 253.563 kb on - strandat 253.563 kb on - strandat 253.563 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.634 kb on + strandat 253.635 kb on - strandat 253.859 kb on - strandat 253.931 kb on - strand, within EX31_RS01160at 253.946 kb on + strand, within EX31_RS01160at 253.980 kb on - strand, within EX31_RS01160at 254.111 kb on - strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.134 kb on + strand, within EX31_RS01160at 254.134 kb on + strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.231 kb on + strand, within EX31_RS01160at 254.338 kb on + strand, within EX31_RS01160at 254.338 kb on + strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.406 kb on - strand, within EX31_RS01160at 254.469 kb on + strand, within EX31_RS01160at 254.470 kb on - strand, within EX31_RS01160at 254.473 kb on - strand, within EX31_RS01160at 254.473 kb on - strand, within EX31_RS01160at 254.591 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.638 kb on - strand, within EX31_RS01160at 254.666 kb on + strand, within EX31_RS01160at 254.762 kb on + strand, within EX31_RS01160at 254.785 kb on + strand, within EX31_RS01160at 254.786 kb on - strand, within EX31_RS01160at 254.791 kb on + strand, within EX31_RS01160at 254.792 kb on - strand, within EX31_RS01160at 254.840 kb on - strand, within EX31_RS01160at 254.861 kb on - strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.912 kb on + strand, within EX31_RS01160at 254.936 kb on - strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 255.095 kb on + strand, within EX31_RS01160at 255.096 kb on - strand, within EX31_RS01160at 255.118 kb on + strand, within EX31_RS01160at 255.118 kb on + strand, within EX31_RS01160at 255.118 kb on + strand, within EX31_RS01160at 255.119 kb on - strand, within EX31_RS01160at 255.119 kb on - strand, within EX31_RS01160at 255.307 kb on + strandat 255.307 kb on + strandat 255.308 kb on - strandat 255.352 kb on + strandat 255.352 kb on + strandat 255.352 kb on + strandat 255.353 kb on - strandat 255.353 kb on - strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.427 kb on - strandat 255.427 kb on - strandat 255.427 kb on - strandat 255.427 kb on - strandat 255.451 kb on + strandat 255.451 kb on + strandat 255.453 kb on + strandat 255.464 kb on + strandat 255.465 kb on - strandat 255.465 kb on - strandat 255.481 kb on - strandat 255.601 kb on + strandat 255.666 kb on - strandat 255.680 kb on + strandat 255.680 kb on + strandat 255.681 kb on - strandat 255.704 kb on + strandat 255.705 kb on - strandat 255.757 kb on + strand, within EX31_RS01165at 255.758 kb on - strand, within EX31_RS01165at 255.802 kb on - strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.861 kb on - strand, within EX31_RS01165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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252,843 + EX31_RS01155 0.15 +1.4
252,844 - EX31_RS01155 0.15 -0.1
252,864 + EX31_RS01155 0.17 +1.0
252,864 + EX31_RS01155 0.17 +0.3
252,864 + EX31_RS01155 0.17 -0.6
252,864 + EX31_RS01155 0.17 +1.3
252,864 + EX31_RS01155 0.17 +0.8
252,864 + EX31_RS01155 0.17 +1.8
252,865 - EX31_RS01155 0.17 +2.4
252,868 + EX31_RS01155 0.17 +1.7
252,868 + EX31_RS01155 0.17 +3.2
252,868 + EX31_RS01155 0.17 +0.4
252,935 + EX31_RS01155 0.24 -0.8
252,935 + EX31_RS01155 0.24 +0.3
253,102 + EX31_RS01155 0.42 +1.6
253,102 + EX31_RS01155 0.42 -0.1
253,282 + EX31_RS01155 0.61 -0.3
253,283 - EX31_RS01155 0.61 -0.3
253,399 + EX31_RS01155 0.74 -0.8
253,399 + EX31_RS01155 0.74 +0.5
253,562 + +1.3
253,562 + -1.2
253,563 - -0.1
253,563 - +2.6
253,563 - +0.6
253,612 - -0.6
253,612 - +1.9
253,634 + +0.6
253,635 - +1.0
253,859 - +0.7
253,931 - EX31_RS01160 0.13 +1.2
253,946 + EX31_RS01160 0.13 +0.2
253,980 - EX31_RS01160 0.15 -0.2
254,111 - EX31_RS01160 0.23 -2.3
254,113 + EX31_RS01160 0.24 -2.1
254,113 + EX31_RS01160 0.24 -0.2
254,113 + EX31_RS01160 0.24 +0.7
254,134 + EX31_RS01160 0.25 +1.2
254,134 + EX31_RS01160 0.25 -0.4
254,135 - EX31_RS01160 0.25 -1.0
254,135 - EX31_RS01160 0.25 +0.8
254,135 - EX31_RS01160 0.25 -3.0
254,231 + EX31_RS01160 0.31 -0.8
254,338 + EX31_RS01160 0.37 +2.0
254,338 + EX31_RS01160 0.37 -0.2
254,339 - EX31_RS01160 0.37 -0.6
254,339 - EX31_RS01160 0.37 +0.9
254,339 - EX31_RS01160 0.37 +0.3
254,405 + EX31_RS01160 0.41 +1.1
254,405 + EX31_RS01160 0.41 -2.0
254,405 + EX31_RS01160 0.41 +0.2
254,406 - EX31_RS01160 0.41 -0.7
254,469 + EX31_RS01160 0.45 -0.8
254,470 - EX31_RS01160 0.45 -0.0
254,473 - EX31_RS01160 0.45 +0.3
254,473 - EX31_RS01160 0.45 -0.4
254,591 + EX31_RS01160 0.53 +0.2
254,614 + EX31_RS01160 0.54 +0.7
254,614 + EX31_RS01160 0.54 +0.5
254,614 + EX31_RS01160 0.54 -0.8
254,614 + EX31_RS01160 0.54 +0.3
254,615 - EX31_RS01160 0.54 -0.7
254,615 - EX31_RS01160 0.54 -0.2
254,615 - EX31_RS01160 0.54 -2.5
254,638 - EX31_RS01160 0.55 +0.4
254,666 + EX31_RS01160 0.57 -1.6
254,762 + EX31_RS01160 0.63 +1.8
254,785 + EX31_RS01160 0.64 +0.0
254,786 - EX31_RS01160 0.64 -0.5
254,791 + EX31_RS01160 0.65 +1.2
254,792 - EX31_RS01160 0.65 -0.2
254,840 - EX31_RS01160 0.68 +0.7
254,861 - EX31_RS01160 0.69 +0.9
254,908 + EX31_RS01160 0.72 -1.1
254,908 + EX31_RS01160 0.72 -0.9
254,908 + EX31_RS01160 0.72 -1.7
254,908 + EX31_RS01160 0.72 +2.2
254,908 + EX31_RS01160 0.72 -0.2
254,909 - EX31_RS01160 0.72 -1.7
254,909 - EX31_RS01160 0.72 -0.2
254,909 - EX31_RS01160 0.72 -0.7
254,909 - EX31_RS01160 0.72 -2.1
254,909 - EX31_RS01160 0.72 -0.9
254,912 + EX31_RS01160 0.72 +0.9
254,936 - EX31_RS01160 0.74 -0.0
254,965 + EX31_RS01160 0.75 +1.6
254,965 + EX31_RS01160 0.75 +0.9
254,965 + EX31_RS01160 0.75 -1.8
254,965 + EX31_RS01160 0.75 -2.1
254,965 + EX31_RS01160 0.75 -1.8
254,965 + EX31_RS01160 0.75 +0.4
254,965 + EX31_RS01160 0.75 -0.4
254,966 - EX31_RS01160 0.75 +1.7
254,966 - EX31_RS01160 0.75 -0.5
254,966 - EX31_RS01160 0.75 +0.9
254,966 - EX31_RS01160 0.75 +1.0
254,966 - EX31_RS01160 0.75 +1.1
254,966 - EX31_RS01160 0.75 +1.5
254,966 - EX31_RS01160 0.75 +2.2
254,966 - EX31_RS01160 0.75 +0.3
255,095 + EX31_RS01160 0.83 +1.4
255,096 - EX31_RS01160 0.83 -0.8
255,118 + EX31_RS01160 0.85 +0.7
255,118 + EX31_RS01160 0.85 -1.0
255,118 + EX31_RS01160 0.85 -0.7
255,119 - EX31_RS01160 0.85 +1.5
255,119 - EX31_RS01160 0.85 +0.0
255,307 + +1.3
255,307 + +0.1
255,308 - -0.7
255,352 + -0.7
255,352 + +0.0
255,352 + -0.5
255,353 - +0.8
255,353 - +0.2
255,426 + +0.8
255,426 + +2.2
255,426 + +0.3
255,426 + -0.0
255,426 + +0.6
255,426 + +1.0
255,427 - +2.6
255,427 - +0.8
255,427 - -0.1
255,427 - +2.2
255,451 + -1.8
255,451 + +1.0
255,453 + +0.2
255,464 + +1.0
255,465 - -0.1
255,465 - -2.1
255,481 - +1.1
255,601 + -0.7
255,666 - -0.6
255,680 + -0.1
255,680 + +0.7
255,681 - +1.2
255,704 + +0.5
255,705 - +2.6
255,757 + EX31_RS01165 0.13 +4.0
255,758 - EX31_RS01165 0.13 +1.0
255,802 - EX31_RS01165 0.16 -0.2
255,860 + EX31_RS01165 0.20 +0.9
255,860 + EX31_RS01165 0.20 +0.9
255,860 + EX31_RS01165 0.20 -0.4
255,860 + EX31_RS01165 0.20 +1.3
255,861 - EX31_RS01165 0.20 +1.8

Or see this region's nucleotide sequence