Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02531 and CCNA_02532 are separated by 105 nucleotides CCNA_02532 and CCNA_02533 are separated by 16 nucleotides CCNA_02533 and CCNA_03969 overlap by 103 nucleotides CCNA_03969 and CCNA_02534 are separated by 9 nucleotides CCNA_02534 and CCNA_02535 are separated by 178 nucleotides
CCNA_02531: CCNA_02531 - proline-rich hypothetical protein, at 2,679,589 to 2,680,371
_02531
CCNA_02532: CCNA_02532 - hypothetical protein, at 2,680,477 to 2,680,680
_02532
CCNA_02533: CCNA_02533 - hypothetical protein, at 2,680,697 to 2,680,966
_02533
CCNA_03969: CCNA_03969 - hypothetical protein, at 2,680,864 to 2,680,953
_03969
CCNA_02534: CCNA_02534 - hypothetical protein, at 2,680,963 to 2,681,133
_02534
CCNA_02535: CCNA_02535 - DNA topoisomerase I, at 2,681,312 to 2,684,011
_02535
Position (kb)
2680
2681 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2679.698 kb on - strand, within CCNA_02531 at 2679.773 kb on - strand, within CCNA_02531 at 2679.775 kb on + strand, within CCNA_02531 at 2679.822 kb on - strand, within CCNA_02531 at 2679.922 kb on - strand, within CCNA_02531 at 2679.933 kb on - strand, within CCNA_02531 at 2679.966 kb on - strand, within CCNA_02531 at 2679.990 kb on - strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2680.000 kb on - strand, within CCNA_02531 at 2680.004 kb on - strand, within CCNA_02531 at 2680.053 kb on + strand, within CCNA_02531 at 2680.061 kb on - strand, within CCNA_02531 at 2680.070 kb on + strand, within CCNA_02531 at 2680.110 kb on - strand, within CCNA_02531 at 2680.110 kb on - strand, within CCNA_02531 at 2680.115 kb on + strand, within CCNA_02531 at 2680.256 kb on + strand, within CCNA_02531 at 2680.262 kb on + strand, within CCNA_02531 at 2680.301 kb on + strand at 2680.309 kb on - strand at 2680.309 kb on - strand at 2680.314 kb on + strand at 2680.341 kb on - strand at 2680.404 kb on + strand at 2680.411 kb on + strand at 2680.411 kb on + strand at 2680.411 kb on + strand at 2680.419 kb on + strand at 2680.450 kb on - strand at 2680.473 kb on + strand at 2680.490 kb on - strand at 2680.517 kb on - strand, within CCNA_02532 at 2680.536 kb on - strand, within CCNA_02532 at 2680.549 kb on + strand, within CCNA_02532 at 2680.550 kb on - strand, within CCNA_02532 at 2680.557 kb on - strand, within CCNA_02532 at 2680.562 kb on - strand, within CCNA_02532 at 2680.583 kb on + strand, within CCNA_02532 at 2680.583 kb on + strand, within CCNA_02532 at 2680.583 kb on + strand, within CCNA_02532 at 2680.623 kb on - strand, within CCNA_02532 at 2680.626 kb on + strand, within CCNA_02532 at 2680.626 kb on + strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.664 kb on - strand at 2680.677 kb on + strand at 2680.682 kb on + strand at 2680.699 kb on + strand at 2680.702 kb on - strand at 2680.707 kb on - strand at 2680.715 kb on + strand at 2680.723 kb on - strand at 2680.727 kb on + strand, within CCNA_02533 at 2680.750 kb on - strand, within CCNA_02533 at 2680.757 kb on + strand, within CCNA_02533 at 2680.757 kb on + strand, within CCNA_02533 at 2680.765 kb on - strand, within CCNA_02533 at 2680.765 kb on - strand, within CCNA_02533 at 2680.770 kb on - strand, within CCNA_02533 at 2680.778 kb on + strand, within CCNA_02533 at 2680.851 kb on + strand, within CCNA_02533 at 2680.859 kb on - strand, within CCNA_02533 at 2680.883 kb on + strand at 2680.888 kb on + strand at 2680.891 kb on - strand at 2680.906 kb on + strand at 2680.907 kb on + strand at 2680.907 kb on + strand at 2680.915 kb on - strand at 2680.921 kb on - strand at 2680.948 kb on + strand at 2681.077 kb on - strand, within CCNA_02534 at 2681.101 kb on - strand, within CCNA_02534 at 2681.101 kb on - strand, within CCNA_02534 at 2681.137 kb on + strand at 2681.137 kb on + strand at 2681.156 kb on + strand at 2681.178 kb on + strand at 2681.186 kb on - strand at 2681.201 kb on + strand at 2681.239 kb on + strand at 2681.259 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 2,679,698 - CCNA_02531 0.14 +0.6 2,679,773 - CCNA_02531 0.23 -1.0 2,679,775 + CCNA_02531 0.24 -0.0 2,679,822 - CCNA_02531 0.30 +0.0 2,679,922 - CCNA_02531 0.43 +1.4 2,679,933 - CCNA_02531 0.44 -2.7 2,679,966 - CCNA_02531 0.48 +0.6 2,679,990 - CCNA_02531 0.51 +0.8 2,679,996 + CCNA_02531 0.52 +0.0 2,679,996 + CCNA_02531 0.52 +0.4 2,679,996 + CCNA_02531 0.52 +0.8 2,680,000 - CCNA_02531 0.52 +0.5 2,680,004 - CCNA_02531 0.53 -0.6 2,680,053 + CCNA_02531 0.59 -0.8 2,680,061 - CCNA_02531 0.60 +0.4 2,680,070 + CCNA_02531 0.61 +0.6 2,680,110 - CCNA_02531 0.67 -1.8 2,680,110 - CCNA_02531 0.67 +1.0 2,680,115 + CCNA_02531 0.67 -1.3 2,680,256 + CCNA_02531 0.85 -0.3 2,680,262 + CCNA_02531 0.86 +1.8 2,680,301 + -2.6 2,680,309 - +0.4 2,680,309 - -1.0 2,680,314 + -1.3 2,680,341 - -0.0 2,680,404 + -1.1 2,680,411 + +1.5 2,680,411 + +0.7 2,680,411 + +0.0 2,680,419 + +0.5 2,680,450 - -0.9 2,680,473 + -0.7 2,680,490 - -0.6 2,680,517 - CCNA_02532 0.20 -1.2 2,680,536 - CCNA_02532 0.29 +0.1 2,680,549 + CCNA_02532 0.35 -1.1 2,680,550 - CCNA_02532 0.36 -0.1 2,680,557 - CCNA_02532 0.39 -0.4 2,680,562 - CCNA_02532 0.42 +0.7 2,680,583 + CCNA_02532 0.52 -1.6 2,680,583 + CCNA_02532 0.52 -1.6 2,680,583 + CCNA_02532 0.52 -1.1 2,680,623 - CCNA_02532 0.72 -0.1 2,680,626 + CCNA_02532 0.73 -0.1 2,680,626 + CCNA_02532 0.73 -0.9 2,680,634 - CCNA_02532 0.77 -0.1 2,680,634 - CCNA_02532 0.77 +0.8 2,680,634 - CCNA_02532 0.77 +1.1 2,680,634 - CCNA_02532 0.77 +0.6 2,680,664 - +0.8 2,680,677 + -1.3 2,680,682 + -0.8 2,680,699 + -3.0 2,680,702 - -0.3 2,680,707 - +0.5 2,680,715 + -2.4 2,680,723 - -1.8 2,680,727 + CCNA_02533 0.11 -0.2 2,680,750 - CCNA_02533 0.20 -1.3 2,680,757 + CCNA_02533 0.22 -1.3 2,680,757 + CCNA_02533 0.22 -1.0 2,680,765 - CCNA_02533 0.25 -0.5 2,680,765 - CCNA_02533 0.25 -1.4 2,680,770 - CCNA_02533 0.27 +0.6 2,680,778 + CCNA_02533 0.30 -2.3 2,680,851 + CCNA_02533 0.57 -0.1 2,680,859 - CCNA_02533 0.60 -0.3 2,680,883 + +0.3 2,680,888 + +0.5 2,680,891 - +0.8 2,680,906 + -1.3 2,680,907 + -2.5 2,680,907 + -3.3 2,680,915 - +1.5 2,680,921 - +1.1 2,680,948 + -0.2 2,681,077 - CCNA_02534 0.67 +1.6 2,681,101 - CCNA_02534 0.81 +1.1 2,681,101 - CCNA_02534 0.81 +1.8 2,681,137 + +0.3 2,681,137 + -0.5 2,681,156 + -0.2 2,681,178 + +1.3 2,681,186 - +0.3 2,681,201 + -3.7 2,681,239 + +2.3 2,681,259 + -0.3
Or see this region's nucleotide sequence