Experiment: R2A with Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24460 and CA265_RS24465 are separated by 11 nucleotides CA265_RS24465 and CA265_RS24470 are separated by 34 nucleotides
CA265_RS24460: CA265_RS24460 - TonB-dependent receptor, at 5,955,313 to 5,957,691
_RS24460
CA265_RS24465: CA265_RS24465 - hypothetical protein, at 5,957,703 to 5,958,173
_RS24465
CA265_RS24470: CA265_RS24470 - hypothetical protein, at 5,958,208 to 5,959,443
_RS24470
Position (kb) 5957
5958
5959 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5956.720 kb on + strand, within CA265_RS24460 at 5956.721 kb on - strand, within CA265_RS24460 at 5956.721 kb on - strand, within CA265_RS24460 at 5956.727 kb on - strand, within CA265_RS24460 at 5956.731 kb on + strand, within CA265_RS24460 at 5956.772 kb on + strand, within CA265_RS24460 at 5956.846 kb on - strand, within CA265_RS24460 at 5956.875 kb on - strand, within CA265_RS24460 at 5956.875 kb on - strand, within CA265_RS24460 at 5956.919 kb on - strand, within CA265_RS24460 at 5956.941 kb on + strand, within CA265_RS24460 at 5956.974 kb on + strand, within CA265_RS24460 at 5956.974 kb on + strand, within CA265_RS24460 at 5957.009 kb on - strand, within CA265_RS24460 at 5957.150 kb on - strand, within CA265_RS24460 at 5957.234 kb on - strand, within CA265_RS24460 at 5957.253 kb on + strand, within CA265_RS24460 at 5957.288 kb on + strand, within CA265_RS24460 at 5957.299 kb on + strand, within CA265_RS24460 at 5957.300 kb on - strand, within CA265_RS24460 at 5957.303 kb on + strand, within CA265_RS24460 at 5957.382 kb on - strand, within CA265_RS24460 at 5957.386 kb on + strand, within CA265_RS24460 at 5957.387 kb on - strand, within CA265_RS24460 at 5957.423 kb on - strand, within CA265_RS24460 at 5957.423 kb on - strand, within CA265_RS24460 at 5957.423 kb on - strand, within CA265_RS24460 at 5957.460 kb on + strand at 5957.696 kb on + strand at 5957.752 kb on + strand, within CA265_RS24465 at 5957.847 kb on - strand, within CA265_RS24465 at 5957.889 kb on - strand, within CA265_RS24465 at 5957.908 kb on + strand, within CA265_RS24465 at 5958.049 kb on - strand, within CA265_RS24465 at 5958.155 kb on - strand at 5958.155 kb on - strand at 5958.383 kb on + strand, within CA265_RS24470 at 5958.383 kb on + strand, within CA265_RS24470 at 5958.384 kb on - strand, within CA265_RS24470 at 5958.393 kb on + strand, within CA265_RS24470 at 5958.399 kb on + strand, within CA265_RS24470 at 5958.408 kb on + strand, within CA265_RS24470 at 5958.420 kb on + strand, within CA265_RS24470 at 5958.424 kb on + strand, within CA265_RS24470 at 5958.425 kb on - strand, within CA265_RS24470 at 5958.442 kb on + strand, within CA265_RS24470 at 5958.443 kb on - strand, within CA265_RS24470 at 5958.464 kb on - strand, within CA265_RS24470 at 5958.478 kb on + strand, within CA265_RS24470 at 5958.479 kb on - strand, within CA265_RS24470 at 5958.479 kb on - strand, within CA265_RS24470 at 5958.571 kb on - strand, within CA265_RS24470 at 5958.750 kb on + strand, within CA265_RS24470 at 5958.759 kb on + strand, within CA265_RS24470 at 5958.760 kb on - strand, within CA265_RS24470 at 5958.823 kb on - strand, within CA265_RS24470 at 5958.834 kb on + strand, within CA265_RS24470 at 5958.868 kb on - strand, within CA265_RS24470 at 5958.869 kb on + strand, within CA265_RS24470 at 5958.869 kb on + strand, within CA265_RS24470 at 5958.869 kb on + strand, within CA265_RS24470 at 5958.902 kb on + strand, within CA265_RS24470 at 5958.966 kb on + strand, within CA265_RS24470 at 5958.978 kb on + strand, within CA265_RS24470 at 5959.025 kb on + strand, within CA265_RS24470 at 5959.026 kb on - strand, within CA265_RS24470 at 5959.026 kb on - strand, within CA265_RS24470 at 5959.061 kb on + strand, within CA265_RS24470 at 5959.079 kb on - strand, within CA265_RS24470 at 5959.082 kb on + strand, within CA265_RS24470 at 5959.082 kb on + strand, within CA265_RS24470 at 5959.085 kb on + strand, within CA265_RS24470 at 5959.086 kb on - strand, within CA265_RS24470 at 5959.153 kb on + strand, within CA265_RS24470
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Spectinomycin 0.025 mg/ml remove 5,956,720 + CA265_RS24460 0.59 -0.1 5,956,721 - CA265_RS24460 0.59 -0.3 5,956,721 - CA265_RS24460 0.59 -0.2 5,956,727 - CA265_RS24460 0.59 +1.1 5,956,731 + CA265_RS24460 0.60 -0.3 5,956,772 + CA265_RS24460 0.61 -0.2 5,956,846 - CA265_RS24460 0.64 +0.2 5,956,875 - CA265_RS24460 0.66 -0.5 5,956,875 - CA265_RS24460 0.66 +1.0 5,956,919 - CA265_RS24460 0.68 +0.4 5,956,941 + CA265_RS24460 0.68 +0.2 5,956,974 + CA265_RS24460 0.70 -0.3 5,956,974 + CA265_RS24460 0.70 +0.1 5,957,009 - CA265_RS24460 0.71 +0.9 5,957,150 - CA265_RS24460 0.77 +0.5 5,957,234 - CA265_RS24460 0.81 +0.6 5,957,253 + CA265_RS24460 0.82 -0.1 5,957,288 + CA265_RS24460 0.83 -2.7 5,957,299 + CA265_RS24460 0.83 -0.5 5,957,300 - CA265_RS24460 0.84 +0.3 5,957,303 + CA265_RS24460 0.84 -0.4 5,957,382 - CA265_RS24460 0.87 +0.2 5,957,386 + CA265_RS24460 0.87 -1.1 5,957,387 - CA265_RS24460 0.87 +0.4 5,957,423 - CA265_RS24460 0.89 -0.1 5,957,423 - CA265_RS24460 0.89 -0.0 5,957,423 - CA265_RS24460 0.89 -0.5 5,957,460 + -0.3 5,957,696 + -1.7 5,957,752 + CA265_RS24465 0.10 +0.1 5,957,847 - CA265_RS24465 0.31 -1.2 5,957,889 - CA265_RS24465 0.39 -0.4 5,957,908 + CA265_RS24465 0.44 -0.5 5,958,049 - CA265_RS24465 0.73 +0.1 5,958,155 - -0.0 5,958,155 - -0.2 5,958,383 + CA265_RS24470 0.14 -1.1 5,958,383 + CA265_RS24470 0.14 -1.5 5,958,384 - CA265_RS24470 0.14 +0.5 5,958,393 + CA265_RS24470 0.15 -0.3 5,958,399 + CA265_RS24470 0.15 -2.1 5,958,408 + CA265_RS24470 0.16 -0.9 5,958,420 + CA265_RS24470 0.17 -0.2 5,958,424 + CA265_RS24470 0.17 -0.0 5,958,425 - CA265_RS24470 0.18 -0.2 5,958,442 + CA265_RS24470 0.19 -0.6 5,958,443 - CA265_RS24470 0.19 -0.5 5,958,464 - CA265_RS24470 0.21 -0.7 5,958,478 + CA265_RS24470 0.22 -0.1 5,958,479 - CA265_RS24470 0.22 +0.8 5,958,479 - CA265_RS24470 0.22 -0.4 5,958,571 - CA265_RS24470 0.29 -0.5 5,958,750 + CA265_RS24470 0.44 +0.3 5,958,759 + CA265_RS24470 0.45 +1.2 5,958,760 - CA265_RS24470 0.45 -0.2 5,958,823 - CA265_RS24470 0.50 +0.8 5,958,834 + CA265_RS24470 0.51 -0.3 5,958,868 - CA265_RS24470 0.53 -0.1 5,958,869 + CA265_RS24470 0.53 +1.9 5,958,869 + CA265_RS24470 0.53 -0.5 5,958,869 + CA265_RS24470 0.53 -0.1 5,958,902 + CA265_RS24470 0.56 +0.5 5,958,966 + CA265_RS24470 0.61 -1.1 5,958,978 + CA265_RS24470 0.62 -0.8 5,959,025 + CA265_RS24470 0.66 -1.3 5,959,026 - CA265_RS24470 0.66 +0.7 5,959,026 - CA265_RS24470 0.66 +0.3 5,959,061 + CA265_RS24470 0.69 +0.2 5,959,079 - CA265_RS24470 0.70 +1.2 5,959,082 + CA265_RS24470 0.71 -0.3 5,959,082 + CA265_RS24470 0.71 -1.7 5,959,085 + CA265_RS24470 0.71 -0.3 5,959,086 - CA265_RS24470 0.71 -0.4 5,959,153 + CA265_RS24470 0.76 -0.5
Or see this region's nucleotide sequence