Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23560
Experiment: R2A with Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Spectinomycin 0.025 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 5,757,659 | - | CA265_RS23555 | 0.52 | -1.3 | |
| 5,758,262 | + | -0.3 | |||
| 5,758,375 | + | +0.1 | |||
| 5,758,425 | + | -1.2 | |||
| 5,758,437 | + | CA265_RS23560 | 0.10 | +0.7 | |
| 5,758,467 | + | CA265_RS23560 | 0.16 | -0.9 | |
| 5,758,467 | + | CA265_RS23560 | 0.16 | -1.1 | |
| 5,758,504 | + | CA265_RS23560 | 0.23 | -0.6 | |
| 5,758,534 | + | CA265_RS23560 | 0.28 | -0.8 | |
| 5,758,614 | + | CA265_RS23560 | 0.43 | -2.3 | |
| 5,758,614 | + | CA265_RS23560 | 0.43 | -1.3 | |
| 5,758,707 | + | CA265_RS23560 | 0.60 | -1.1 | |
| 5,758,747 | + | CA265_RS23560 | 0.68 | -0.6 | |
| 5,758,762 | - | -0.3 | |||
| 5,758,762 | - | CA265_RS23560 | 0.70 | -0.8 | |
| 5,758,813 | + | CA265_RS23560 | 0.80 | -1.3 | |
| 5,758,814 | - | CA265_RS23560 | 0.80 | +0.4 | |
| 5,758,860 | + | CA265_RS23560 | 0.89 | -0.9 | |
| 5,758,860 | + | CA265_RS23560 | 0.89 | +0.0 | |
| 5,758,959 | + | -0.9 | |||
| 5,758,974 | + | -0.6 | |||
| 5,758,983 | + | +0.5 | |||
| 5,759,821 | + | CA265_RS23565 | 0.82 | +0.7 | |
| 5,759,887 | + | CA265_RS23565 | 0.88 | -0.9 |
Or see this region's nucleotide sequence