Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05010

Experiment: R2A with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS05005 and CA265_RS05010 are separated by 286 nucleotidesCA265_RS05010 and CA265_RS05015 overlap by 13 nucleotidesCA265_RS05015 and CA265_RS05020 are separated by 51 nucleotides CA265_RS05005: CA265_RS05005 - ion transporter, at 1,188,856 to 1,189,797 _RS05005 CA265_RS05010: CA265_RS05010 - anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data), at 1,190,084 to 1,191,073 _RS05010 CA265_RS05015: CA265_RS05015 - N-(5'-phosphoribosyl)anthranilate isomerase, at 1,191,061 to 1,191,696 _RS05015 CA265_RS05020: CA265_RS05020 - tryptophan synthase subunit beta, at 1,191,748 to 1,192,929 _RS05020 Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -2 -1 0 1 2at 1189.105 kb on + strand, within CA265_RS05005at 1189.105 kb on + strand, within CA265_RS05005at 1189.105 kb on + strand, within CA265_RS05005at 1189.106 kb on - strand, within CA265_RS05005at 1189.211 kb on - strand, within CA265_RS05005at 1189.322 kb on - strand, within CA265_RS05005at 1189.332 kb on + strand, within CA265_RS05005at 1189.332 kb on + strand, within CA265_RS05005at 1189.333 kb on - strand, within CA265_RS05005at 1189.353 kb on - strand, within CA265_RS05005at 1189.451 kb on + strand, within CA265_RS05005at 1189.560 kb on - strand, within CA265_RS05005at 1189.560 kb on - strand, within CA265_RS05005at 1189.565 kb on - strand, within CA265_RS05005at 1189.573 kb on + strand, within CA265_RS05005at 1189.593 kb on - strand, within CA265_RS05005at 1189.650 kb on - strand, within CA265_RS05005at 1189.650 kb on - strand, within CA265_RS05005at 1189.650 kb on - strand, within CA265_RS05005at 1189.693 kb on - strand, within CA265_RS05005at 1189.768 kb on - strandat 1189.799 kb on + strandat 1189.849 kb on + strandat 1189.874 kb on + strandat 1190.020 kb on - strandat 1190.032 kb on - strandat 1190.228 kb on - strand, within CA265_RS05010at 1190.233 kb on - strand, within CA265_RS05010at 1190.410 kb on + strand, within CA265_RS05010at 1190.444 kb on - strand, within CA265_RS05010at 1190.460 kb on + strand, within CA265_RS05010at 1190.493 kb on + strand, within CA265_RS05010at 1190.505 kb on + strand, within CA265_RS05010at 1190.529 kb on + strand, within CA265_RS05010at 1190.656 kb on - strand, within CA265_RS05010at 1190.685 kb on + strand, within CA265_RS05010at 1190.730 kb on + strand, within CA265_RS05010at 1190.730 kb on + strand, within CA265_RS05010at 1190.925 kb on + strand, within CA265_RS05010at 1191.060 kb on + strandat 1191.308 kb on + strand, within CA265_RS05015at 1191.331 kb on + strand, within CA265_RS05015at 1191.389 kb on + strand, within CA265_RS05015at 1191.520 kb on - strand, within CA265_RS05015at 1191.666 kb on + strandat 1191.694 kb on + strandat 1191.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Spectinomycin 0.025 mg/ml
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1,189,105 + CA265_RS05005 0.26 +0.2
1,189,105 + CA265_RS05005 0.26 +0.5
1,189,105 + CA265_RS05005 0.26 +0.1
1,189,106 - CA265_RS05005 0.27 -0.8
1,189,211 - CA265_RS05005 0.38 +0.6
1,189,322 - CA265_RS05005 0.49 -0.4
1,189,332 + CA265_RS05005 0.51 +1.7
1,189,332 + CA265_RS05005 0.51 +0.0
1,189,333 - CA265_RS05005 0.51 +0.6
1,189,353 - CA265_RS05005 0.53 +0.4
1,189,451 + CA265_RS05005 0.63 +0.1
1,189,560 - CA265_RS05005 0.75 -0.0
1,189,560 - CA265_RS05005 0.75 -0.5
1,189,565 - CA265_RS05005 0.75 +0.1
1,189,573 + CA265_RS05005 0.76 +0.7
1,189,593 - CA265_RS05005 0.78 +0.0
1,189,650 - CA265_RS05005 0.84 -0.4
1,189,650 - CA265_RS05005 0.84 +0.4
1,189,650 - CA265_RS05005 0.84 +0.3
1,189,693 - CA265_RS05005 0.89 +0.0
1,189,768 - +0.0
1,189,799 + -0.1
1,189,849 + +0.1
1,189,874 + +0.5
1,190,020 - -0.3
1,190,032 - -0.4
1,190,228 - CA265_RS05010 0.15 -0.3
1,190,233 - CA265_RS05010 0.15 +0.3
1,190,410 + CA265_RS05010 0.33 -0.8
1,190,444 - CA265_RS05010 0.36 +2.3
1,190,460 + CA265_RS05010 0.38 -1.9
1,190,493 + CA265_RS05010 0.41 +0.4
1,190,505 + CA265_RS05010 0.43 -0.4
1,190,529 + CA265_RS05010 0.45 -0.7
1,190,656 - CA265_RS05010 0.58 -1.0
1,190,685 + CA265_RS05010 0.61 -1.2
1,190,730 + CA265_RS05010 0.65 -2.7
1,190,730 + CA265_RS05010 0.65 -1.3
1,190,925 + CA265_RS05010 0.85 -1.4
1,191,060 + +0.2
1,191,308 + CA265_RS05015 0.39 -1.5
1,191,331 + CA265_RS05015 0.42 -1.0
1,191,389 + CA265_RS05015 0.52 +0.7
1,191,520 - CA265_RS05015 0.72 -1.0
1,191,666 + +0.4
1,191,694 + +0.8
1,191,702 + -1.7

Or see this region's nucleotide sequence