Experiment: R2A with Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03110 and CA265_RS03115 are separated by 68 nucleotides CA265_RS03115 and CA265_RS03120 are separated by 3 nucleotides CA265_RS03120 and CA265_RS03125 are separated by 431 nucleotides
CA265_RS03110: CA265_RS03110 - DUF58 domain-containing protein, at 771,037 to 771,954
_RS03110
CA265_RS03115: CA265_RS03115 - peroxiredoxin, at 772,023 to 772,484
_RS03115
CA265_RS03120: CA265_RS03120 - disulfide bond formation protein DsbA, at 772,488 to 773,006
_RS03120
CA265_RS03125: CA265_RS03125 - hypothetical protein, at 773,438 to 773,908
_RS03125
Position (kb) 772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 771.025 kb on + strand at 771.025 kb on + strand at 771.052 kb on + strand at 771.101 kb on + strand at 771.101 kb on + strand at 771.104 kb on + strand at 771.180 kb on + strand, within CA265_RS03110 at 771.180 kb on + strand, within CA265_RS03110 at 771.183 kb on + strand, within CA265_RS03110 at 771.311 kb on - strand, within CA265_RS03110 at 771.373 kb on + strand, within CA265_RS03110 at 771.374 kb on - strand, within CA265_RS03110 at 771.417 kb on + strand, within CA265_RS03110 at 771.417 kb on + strand, within CA265_RS03110 at 771.473 kb on - strand, within CA265_RS03110 at 771.473 kb on - strand, within CA265_RS03110 at 771.476 kb on + strand, within CA265_RS03110 at 771.488 kb on + strand, within CA265_RS03110 at 771.510 kb on + strand, within CA265_RS03110 at 771.511 kb on - strand, within CA265_RS03110 at 771.516 kb on - strand, within CA265_RS03110 at 771.571 kb on - strand, within CA265_RS03110 at 771.602 kb on + strand, within CA265_RS03110 at 771.622 kb on - strand, within CA265_RS03110 at 771.622 kb on - strand, within CA265_RS03110 at 771.705 kb on + strand, within CA265_RS03110 at 771.781 kb on - strand, within CA265_RS03110 at 771.852 kb on - strand, within CA265_RS03110 at 771.866 kb on - strand at 771.868 kb on - strand at 771.925 kb on + strand at 772.022 kb on + strand at 772.022 kb on + strand at 772.022 kb on + strand at 772.042 kb on + strand at 772.042 kb on + strand at 772.204 kb on - strand, within CA265_RS03115 at 772.329 kb on + strand, within CA265_RS03115 at 772.361 kb on + strand, within CA265_RS03115 at 772.454 kb on - strand at 772.488 kb on - strand at 772.553 kb on - strand, within CA265_RS03120 at 772.588 kb on - strand, within CA265_RS03120 at 772.610 kb on + strand, within CA265_RS03120 at 772.736 kb on + strand, within CA265_RS03120 at 772.826 kb on - strand, within CA265_RS03120 at 772.869 kb on - strand, within CA265_RS03120 at 772.879 kb on + strand, within CA265_RS03120 at 773.004 kb on + strand at 773.004 kb on + strand at 773.041 kb on + strand at 773.091 kb on - strand at 773.091 kb on - strand at 773.106 kb on + strand at 773.236 kb on - strand at 773.254 kb on - strand at 773.293 kb on + strand at 773.336 kb on - strand at 773.405 kb on + strand at 773.430 kb on + strand at 773.451 kb on + strand at 773.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Spectinomycin 0.025 mg/ml remove 771,025 + -0.2 771,025 + -0.5 771,052 + +0.6 771,101 + -0.6 771,101 + -0.1 771,104 + +0.1 771,180 + CA265_RS03110 0.16 -1.4 771,180 + CA265_RS03110 0.16 +0.1 771,183 + CA265_RS03110 0.16 +0.6 771,311 - CA265_RS03110 0.30 -0.1 771,373 + CA265_RS03110 0.37 +0.0 771,374 - CA265_RS03110 0.37 +1.2 771,417 + CA265_RS03110 0.41 -0.3 771,417 + CA265_RS03110 0.41 -0.4 771,473 - CA265_RS03110 0.47 -0.1 771,473 - CA265_RS03110 0.47 +0.5 771,476 + CA265_RS03110 0.48 -0.7 771,488 + CA265_RS03110 0.49 +0.4 771,510 + CA265_RS03110 0.52 -0.5 771,511 - CA265_RS03110 0.52 -0.2 771,516 - CA265_RS03110 0.52 -0.2 771,571 - CA265_RS03110 0.58 +0.1 771,602 + CA265_RS03110 0.62 -0.4 771,622 - CA265_RS03110 0.64 -0.9 771,622 - CA265_RS03110 0.64 +1.2 771,705 + CA265_RS03110 0.73 +0.5 771,781 - CA265_RS03110 0.81 +0.0 771,852 - CA265_RS03110 0.89 -0.6 771,866 - -0.6 771,868 - +0.3 771,925 + -0.2 772,022 + +0.7 772,022 + -0.2 772,022 + +0.9 772,042 + +0.3 772,042 + -0.2 772,204 - CA265_RS03115 0.39 -0.6 772,329 + CA265_RS03115 0.66 -0.4 772,361 + CA265_RS03115 0.73 -2.8 772,454 - -0.5 772,488 - -0.3 772,553 - CA265_RS03120 0.13 +0.4 772,588 - CA265_RS03120 0.19 +0.1 772,610 + CA265_RS03120 0.24 +1.2 772,736 + CA265_RS03120 0.48 +0.2 772,826 - CA265_RS03120 0.65 -0.6 772,869 - CA265_RS03120 0.73 -0.1 772,879 + CA265_RS03120 0.75 -0.3 773,004 + +0.6 773,004 + -0.9 773,041 + +0.3 773,091 - -0.2 773,091 - +0.2 773,106 + +0.3 773,236 - +0.8 773,254 - -0.5 773,293 + +1.1 773,336 - +1.7 773,405 + -0.2 773,430 + -0.1 773,451 + -0.0 773,452 - -0.1
Or see this region's nucleotide sequence