Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14745

Experiment: MRS with cholate 500 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS with cholate 500 ug/ml
1,081,092	-				-0.2
1,081,189	+		BBR_RS14740	0.23	+0.2
1,081,223	+		BBR_RS14740	0.33	+0.1
1,081,231	-		BBR_RS14740	0.35	+1.3
1,081,268	+		BBR_RS14740	0.45	-1.2
1,081,271	-		BBR_RS14740	0.46	+1.0
1,081,276	-		BBR_RS14740	0.47	-0.5
1,081,348	+		BBR_RS14740	0.67	-0.0
1,081,348	+		BBR_RS14740	0.67	-0.3
1,081,395	-		BBR_RS14740	0.80	+0.0
1,081,421	+		BBR_RS14740	0.87	+0.3
1,081,429	-		BBR_RS14740	0.89	-0.4
1,081,544	+				-0.1
1,081,558	-				-0.2
1,081,564	-				-1.0
1,081,609	+				-0.3
1,081,661	-				-0.9
1,081,731	+				-0.3
1,081,739	+				+0.1
1,081,739	+				-0.2
1,081,768	+				+1.4
1,081,776	-		BBR_RS20855	0.10	-2.6
1,081,791	+		BBR_RS20855	0.16	-0.6
1,081,846	-		BBR_RS20855	0.35	-2.1
1,081,865	+		BBR_RS20855	0.42	+0.6
1,081,871	-		BBR_RS20855	0.44	-0.7
1,081,916	+		BBR_RS20855	0.60	-0.5
1,082,007	+				+0.5
1,082,052	-				-1.6
1,082,134	-				-0.3
1,082,139	+				-0.5
1,082,224	+				-0.5
1,082,227	-				-0.7
1,082,250	+				-1.1
1,082,274	-				-1.0
1,082,284	-		BBR_RS14745	0.10	-1.4
1,082,380	+		BBR_RS14745	0.15	+0.3
1,082,380	-		BBR_RS14745	0.15	-1.3
1,082,384	+		BBR_RS14745	0.15	-1.7
1,082,387	-		BBR_RS14745	0.15	+0.1
1,082,389	+		BBR_RS14745	0.15	-1.2
1,082,389	+		BBR_RS14745	0.15	-0.3
1,082,391	+		BBR_RS14745	0.15	-0.8
1,082,399	-		BBR_RS14745	0.16	-0.8
1,082,440	-		BBR_RS14745	0.18	-0.6
1,082,488	-		BBR_RS14745	0.20	-1.6
1,082,544	+		BBR_RS14745	0.23	-2.0
1,082,570	+		BBR_RS14745	0.24	-0.5
1,082,575	+		BBR_RS14745	0.24	-0.1
1,082,592	-		BBR_RS14745	0.25	-2.4
1,082,646	+		BBR_RS14745	0.28	-1.0
1,082,646	+		BBR_RS14745	0.28	-0.5
1,082,651	+		BBR_RS14745	0.28	-0.4
1,082,681	-		BBR_RS14745	0.30	-1.5
1,082,762	-		BBR_RS14745	0.34	-0.3
1,082,762	-		BBR_RS14745	0.34	-1.4
1,082,762	-		BBR_RS14745	0.34	-1.7
1,082,762	-		BBR_RS14745	0.34	-1.0
1,082,785	+		BBR_RS14745	0.35	-0.3
1,082,785	+		BBR_RS14745	0.35	-2.8
1,082,793	-		BBR_RS14745	0.35	-0.7
1,082,835	-		BBR_RS14745	0.37	-0.7
1,082,876	-		BBR_RS14745	0.39	-0.6
1,082,883	-		BBR_RS14745	0.39	+0.4
1,082,921	+		BBR_RS14745	0.41	+0.0
1,082,934	-		BBR_RS14745	0.42	-1.0
1,082,940	+		BBR_RS14745	0.42	-0.9
1,082,943	-		BBR_RS14745	0.42	-1.4
1,082,947	+		BBR_RS14745	0.43	-0.8
1,083,000	+		BBR_RS14745	0.45	-0.1
1,083,151	+		BBR_RS14745	0.52	+0.4
1,083,151	+		BBR_RS14745	0.52	-2.8
1,083,151	-		BBR_RS14745	0.52	-0.9
1,083,153	+		BBR_RS14745	0.53	-1.4
1,083,158	+		BBR_RS14745	0.53	+0.6
1,083,198	+		BBR_RS14745	0.55	-0.1
1,083,210	+		BBR_RS14745	0.55	+0.2
1,083,215	+		BBR_RS14745	0.56	-0.8
1,083,223	-		BBR_RS14745	0.56	-2.4
1,083,229	+		BBR_RS14745	0.56	-0.8
1,083,229	+		BBR_RS14745	0.56	-0.0
1,083,286	+		BBR_RS14745	0.59	-2.4
1,083,354	-		BBR_RS14745	0.62	-0.6
1,083,393	-		BBR_RS14745	0.64	+1.4
1,083,395	-		BBR_RS14745	0.64	+0.1
1,083,397	+		BBR_RS14745	0.64	-1.0
1,083,402	-		BBR_RS14745	0.65	-0.4
1,083,433	+		BBR_RS14745	0.66	-0.1
1,083,446	-		BBR_RS14745	0.67	-1.8
1,083,504	+		BBR_RS14745	0.70	-0.4
1,083,504	+		BBR_RS14745	0.70	-0.4
1,083,505	-		BBR_RS14745	0.70	-0.7
1,083,528	+		BBR_RS14745	0.71	-0.2
1,083,531	-		BBR_RS14745	0.71	-1.6
1,083,536	-		BBR_RS14745	0.71	-1.1
1,083,538	+		BBR_RS14745	0.71	-0.5
1,083,538	+		BBR_RS14745	0.71	+0.1
1,083,546	-		BBR_RS14745	0.72	-1.1
1,083,546	-		BBR_RS14745	0.72	-1.9
1,083,546	-		BBR_RS14745	0.72	-1.4
1,083,570	-		BBR_RS14745	0.73	-0.2
1,083,594	+		BBR_RS14745	0.74	+0.3
1,083,594	+		BBR_RS14745	0.74	+0.2
1,083,618	-		BBR_RS14745	0.75	-0.2
1,083,626	+		BBR_RS14745	0.76	+0.1
1,083,641	-		BBR_RS14745	0.76	-0.7
1,083,644	+		BBR_RS14745	0.77	-1.0
1,083,650	-		BBR_RS14745	0.77	-0.3
1,083,652	-		BBR_RS14745	0.77	+0.2
1,083,689	-		BBR_RS14745	0.79	-0.5
1,083,713	+		BBR_RS14745	0.80	+0.2
1,083,713	+		BBR_RS14745	0.80	-0.4
1,083,738	+		BBR_RS14745	0.81	-0.1
1,083,868	+		BBR_RS14745	0.87	-0.1
1,083,895	-		BBR_RS14745	0.89	-1.4
1,083,896	+		BBR_RS14745	0.89	+0.8
1,083,897	-		BBR_RS14745	0.89	+0.2
1,083,904	+		BBR_RS14745	0.89	-0.2
1,083,928	+				-0.6
1,083,928	+				-0.4
1,083,936	-				+0.2
1,083,965	+				-0.3
1,084,081	+				+0.3
1,084,183	+				-0.1
1,084,183	+				+0.2
1,084,307	-				-0.7
1,084,334	-				+0.1
1,084,371	+				+0.2
1,084,379	-				+0.6
1,084,392	+				-0.3
1,084,405	-				+0.8
1,084,466	-		BBR_RS14750	0.13	-1.6
1,084,541	-		BBR_RS14750	0.17	+0.1
1,084,602	+		BBR_RS14750	0.21	-0.8
1,084,610	-		BBR_RS14750	0.21	+0.1
1,084,610	-		BBR_RS14750	0.21	-0.1
1,084,623	+		BBR_RS14750	0.22	-0.5
1,084,623	+		BBR_RS14750	0.22	+1.1
1,084,623	+		BBR_RS14750	0.22	-0.5
1,084,715	+		BBR_RS14750	0.28	+0.6
1,084,725	-		BBR_RS14750	0.28	+0.4
1,084,731	+		BBR_RS14750	0.29	-0.2
1,084,744	-		BBR_RS14750	0.30	-0.7
1,084,752	+		BBR_RS14750	0.30	+0.5
1,084,755	-		BBR_RS14750	0.30	+0.2
1,084,853	+		BBR_RS14750	0.36	-0.2
1,084,883	-		BBR_RS14750	0.38	-1.9
1,084,912	-		BBR_RS14750	0.40	-0.6
1,085,019	+		BBR_RS14750	0.46	-0.3
1,085,019	+		BBR_RS14750	0.46	+0.1
1,085,043	+		BBR_RS14750	0.48	-0.0
1,085,051	-		BBR_RS14750	0.48	-1.1
1,085,051	-		BBR_RS14750	0.48	+0.1
1,085,111	+		BBR_RS14750	0.52	+0.3