Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27325 and AO353_27330 overlap by 8 nucleotides AO353_27330 and AO353_27335 overlap by 4 nucleotides AO353_27335 and AO353_27340 are separated by 2 nucleotides AO353_27340 and AO353_27345 are separated by 1 nucleotides
AO353_27325: AO353_27325 - hypothetical protein, at 5,973,161 to 5,973,673
_27325
AO353_27330: AO353_27330 - hypothetical protein, at 5,973,666 to 5,974,331
_27330
AO353_27335: AO353_27335 - hypothetical protein, at 5,974,328 to 5,974,642
_27335
AO353_27340: AO353_27340 - hypothetical protein, at 5,974,645 to 5,974,869
_27340
AO353_27345: AO353_27345 - capsid protein, at 5,974,871 to 5,975,899
_27345
Position (kb) 5974
5975 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5973.341 kb on + strand, within AO353_27325 at 5973.341 kb on + strand, within AO353_27325 at 5973.341 kb on + strand, within AO353_27325 at 5973.341 kb on + strand, within AO353_27325 at 5973.342 kb on - strand, within AO353_27325 at 5973.692 kb on - strand at 5973.946 kb on + strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.952 kb on + strand, within AO353_27330 at 5973.958 kb on + strand, within AO353_27330 at 5973.959 kb on - strand, within AO353_27330 at 5973.974 kb on - strand, within AO353_27330 at 5973.993 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.113 kb on + strand, within AO353_27330 at 5974.114 kb on - strand, within AO353_27330 at 5974.114 kb on - strand, within AO353_27330 at 5974.166 kb on + strand, within AO353_27330 at 5974.167 kb on - strand, within AO353_27330 at 5974.347 kb on - strand at 5974.379 kb on + strand, within AO353_27335 at 5974.379 kb on + strand, within AO353_27335 at 5974.380 kb on - strand, within AO353_27335 at 5974.380 kb on - strand, within AO353_27335 at 5974.395 kb on + strand, within AO353_27335 at 5974.646 kb on + strand at 5974.647 kb on - strand at 5974.791 kb on - strand, within AO353_27340 at 5974.791 kb on - strand, within AO353_27340 at 5974.887 kb on + strand at 5974.887 kb on + strand at 5974.888 kb on - strand at 5974.888 kb on - strand at 5974.888 kb on - strand at 5975.040 kb on + strand, within AO353_27345 at 5975.040 kb on + strand, within AO353_27345 at 5975.041 kb on - strand, within AO353_27345 at 5975.047 kb on + strand, within AO353_27345 at 5975.047 kb on + strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.127 kb on + strand, within AO353_27345 at 5975.128 kb on - strand, within AO353_27345 at 5975.139 kb on + strand, within AO353_27345 at 5975.140 kb on - strand, within AO353_27345 at 5975.145 kb on + strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.252 kb on + strand, within AO353_27345 at 5975.253 kb on - strand, within AO353_27345
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 5,973,341 + AO353_27325 0.35 -0.2 5,973,341 + AO353_27325 0.35 +0.2 5,973,341 + AO353_27325 0.35 -0.1 5,973,341 + AO353_27325 0.35 -0.8 5,973,342 - AO353_27325 0.35 -0.7 5,973,692 - -0.2 5,973,946 + AO353_27330 0.42 +0.2 5,973,947 - AO353_27330 0.42 +0.8 5,973,947 - AO353_27330 0.42 +2.2 5,973,947 - AO353_27330 0.42 +0.4 5,973,952 + AO353_27330 0.43 +0.3 5,973,958 + AO353_27330 0.44 +0.2 5,973,959 - AO353_27330 0.44 -1.8 5,973,974 - AO353_27330 0.46 -0.2 5,973,993 + AO353_27330 0.49 -0.1 5,974,109 + AO353_27330 0.67 +0.4 5,974,109 + AO353_27330 0.67 +0.1 5,974,109 + AO353_27330 0.67 +0.1 5,974,113 + AO353_27330 0.67 -0.3 5,974,114 - AO353_27330 0.67 -0.4 5,974,114 - AO353_27330 0.67 -2.2 5,974,166 + AO353_27330 0.75 +0.2 5,974,167 - AO353_27330 0.75 -0.5 5,974,347 - -0.5 5,974,379 + AO353_27335 0.16 -1.9 5,974,379 + AO353_27335 0.16 +1.3 5,974,380 - AO353_27335 0.17 -0.6 5,974,380 - AO353_27335 0.17 -2.0 5,974,395 + AO353_27335 0.21 -0.5 5,974,646 + -0.5 5,974,647 - +0.9 5,974,791 - AO353_27340 0.65 -0.2 5,974,791 - AO353_27340 0.65 +2.0 5,974,887 + -0.3 5,974,887 + +0.2 5,974,888 - -0.6 5,974,888 - -1.3 5,974,888 - -0.4 5,975,040 + AO353_27345 0.16 -1.2 5,975,040 + AO353_27345 0.16 -0.3 5,975,041 - AO353_27345 0.17 +0.7 5,975,047 + AO353_27345 0.17 -1.7 5,975,047 + AO353_27345 0.17 -0.9 5,975,048 - AO353_27345 0.17 +0.1 5,975,048 - AO353_27345 0.17 -1.3 5,975,048 - AO353_27345 0.17 +0.3 5,975,048 - AO353_27345 0.17 +0.7 5,975,048 - AO353_27345 0.17 -0.7 5,975,048 - AO353_27345 0.17 -0.3 5,975,127 + AO353_27345 0.25 +0.7 5,975,128 - AO353_27345 0.25 -0.9 5,975,139 + AO353_27345 0.26 -1.3 5,975,140 - AO353_27345 0.26 -1.9 5,975,145 + AO353_27345 0.27 +0.1 5,975,182 - AO353_27345 0.30 -0.5 5,975,182 - AO353_27345 0.30 -0.1 5,975,182 - AO353_27345 0.30 -0.7 5,975,252 + AO353_27345 0.37 -0.2 5,975,253 - AO353_27345 0.37 +0.4
Or see this region's nucleotide sequence