Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05730

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05720 and AO353_05725 are separated by 163 nucleotidesAO353_05725 and AO353_05730 are separated by 496 nucleotidesAO353_05730 and AO353_05735 are separated by 278 nucleotides AO353_05720: AO353_05720 - 4Fe-4S ferredoxin, at 1,263,211 to 1,266,021 _05720 AO353_05725: AO353_05725 - tmRNA, at 1,266,185 to 1,266,460 _05725 AO353_05730: AO353_05730 - hypothetical protein, at 1,266,957 to 1,267,229 _05730 AO353_05735: AO353_05735 - hypothetical protein, at 1,267,508 to 1,268,818 _05735 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -2 -1 0 1 2at 1265.968 kb on + strandat 1265.983 kb on + strandat 1265.984 kb on - strandat 1265.984 kb on - strandat 1265.990 kb on + strandat 1266.063 kb on + strandat 1266.063 kb on + strandat 1266.063 kb on + strandat 1266.064 kb on - strandat 1266.064 kb on - strandat 1266.064 kb on - strandat 1266.089 kb on + strandat 1266.089 kb on + strandat 1266.090 kb on - strandat 1266.132 kb on + strandat 1266.132 kb on + strandat 1266.132 kb on + strandat 1266.132 kb on + strandat 1266.133 kb on - strandat 1266.133 kb on - strandat 1266.133 kb on - strandat 1266.133 kb on - strandat 1266.139 kb on + strandat 1266.140 kb on - strandat 1266.214 kb on + strand, within AO353_05725at 1266.214 kb on + strand, within AO353_05725at 1266.214 kb on + strand, within AO353_05725at 1266.214 kb on + strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.215 kb on - strand, within AO353_05725at 1266.265 kb on + strand, within AO353_05725at 1266.265 kb on + strand, within AO353_05725at 1266.265 kb on + strand, within AO353_05725at 1266.265 kb on + strand, within AO353_05725at 1266.265 kb on + strand, within AO353_05725at 1266.266 kb on - strand, within AO353_05725at 1266.266 kb on - strand, within AO353_05725at 1266.266 kb on - strand, within AO353_05725at 1266.266 kb on - strand, within AO353_05725at 1266.266 kb on - strand, within AO353_05725at 1266.378 kb on - strand, within AO353_05725at 1266.378 kb on - strand, within AO353_05725at 1266.378 kb on - strand, within AO353_05725at 1266.516 kb on + strandat 1266.516 kb on + strandat 1266.516 kb on + strandat 1266.591 kb on - strandat 1266.643 kb on + strandat 1266.644 kb on - strandat 1266.645 kb on + strandat 1266.645 kb on + strandat 1266.645 kb on + strandat 1266.773 kb on + strandat 1266.773 kb on + strandat 1266.773 kb on + strandat 1266.795 kb on - strandat 1266.872 kb on - strandat 1266.875 kb on - strandat 1266.892 kb on + strandat 1266.892 kb on + strandat 1266.892 kb on + strandat 1266.972 kb on + strandat 1267.067 kb on + strand, within AO353_05730at 1267.067 kb on + strand, within AO353_05730at 1267.067 kb on + strand, within AO353_05730at 1267.067 kb on + strand, within AO353_05730at 1267.067 kb on + strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.068 kb on - strand, within AO353_05730at 1267.109 kb on - strand, within AO353_05730at 1267.170 kb on - strand, within AO353_05730at 1267.197 kb on + strand, within AO353_05730at 1267.197 kb on + strand, within AO353_05730at 1267.198 kb on - strand, within AO353_05730at 1267.198 kb on - strand, within AO353_05730at 1267.198 kb on - strand, within AO353_05730at 1267.263 kb on + strandat 1267.263 kb on + strandat 1267.263 kb on + strandat 1267.263 kb on + strandat 1267.263 kb on + strandat 1267.264 kb on - strandat 1267.334 kb on + strandat 1267.334 kb on + strandat 1267.335 kb on - strandat 1267.335 kb on - strandat 1267.335 kb on - strandat 1267.335 kb on - strandat 1267.335 kb on - strandat 1267.335 kb on - strandat 1267.346 kb on + strandat 1267.346 kb on + strandat 1267.413 kb on + strandat 1267.413 kb on + strandat 1267.414 kb on - strandat 1267.414 kb on - strandat 1267.417 kb on + strandat 1267.418 kb on - strandat 1267.418 kb on - strandat 1267.436 kb on + strandat 1267.436 kb on + strandat 1267.566 kb on + strandat 1267.571 kb on - strandat 1267.749 kb on + strand, within AO353_05735at 1267.762 kb on + strand, within AO353_05735at 1267.793 kb on - strand, within AO353_05735at 1267.897 kb on + strand, within AO353_05735at 1267.912 kb on - strand, within AO353_05735at 1267.912 kb on - strand, within AO353_05735at 1267.952 kb on + strand, within AO353_05735at 1267.953 kb on - strand, within AO353_05735at 1267.978 kb on - strand, within AO353_05735at 1267.978 kb on - strand, within AO353_05735at 1268.026 kb on + strand, within AO353_05735at 1268.026 kb on + strand, within AO353_05735at 1268.026 kb on + strand, within AO353_05735at 1268.026 kb on + strand, within AO353_05735at 1268.026 kb on + strand, within AO353_05735at 1268.026 kb on + strand, within AO353_05735at 1268.027 kb on - strand, within AO353_05735at 1268.027 kb on - strand, within AO353_05735at 1268.027 kb on - strand, within AO353_05735at 1268.073 kb on + strand, within AO353_05735at 1268.073 kb on + strand, within AO353_05735at 1268.073 kb on + strand, within AO353_05735at 1268.073 kb on + strand, within AO353_05735at 1268.074 kb on - strand, within AO353_05735at 1268.074 kb on - strand, within AO353_05735at 1268.074 kb on - strand, within AO353_05735at 1268.074 kb on - strand, within AO353_05735at 1268.074 kb on - strand, within AO353_05735at 1268.074 kb on - strand, within AO353_05735at 1268.097 kb on + strand, within AO353_05735at 1268.097 kb on + strand, within AO353_05735at 1268.097 kb on + strand, within AO353_05735at 1268.097 kb on + strand, within AO353_05735at 1268.097 kb on + strand, within AO353_05735at 1268.098 kb on - strandat 1268.098 kb on - strand, within AO353_05735at 1268.098 kb on - strand, within AO353_05735at 1268.103 kb on + strand, within AO353_05735at 1268.103 kb on + strand, within AO353_05735at 1268.103 kb on + strand, within AO353_05735at 1268.103 kb on + strand, within AO353_05735at 1268.103 kb on + strand, within AO353_05735at 1268.104 kb on - strand, within AO353_05735at 1268.104 kb on - strand, within AO353_05735at 1268.104 kb on - strand, within AO353_05735at 1268.165 kb on + strand, within AO353_05735at 1268.165 kb on + strand, within AO353_05735at 1268.165 kb on + strand, within AO353_05735at 1268.166 kb on - strand, within AO353_05735at 1268.166 kb on - strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.186 kb on + strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.187 kb on - strand, within AO353_05735at 1268.190 kb on + strand, within AO353_05735at 1268.190 kb on + strand, within AO353_05735at 1268.190 kb on + strand, within AO353_05735at 1268.190 kb on + strand, within AO353_05735at 1268.191 kb on - strand, within AO353_05735at 1268.191 kb on - strand, within AO353_05735at 1268.191 kb on - strand, within AO353_05735at 1268.191 kb on - strand, within AO353_05735at 1268.191 kb on - strand, within AO353_05735at 1268.191 kb on - strand, within AO353_05735at 1268.215 kb on + strand, within AO353_05735at 1268.215 kb on + strand, within AO353_05735at 1268.215 kb on + strand, within AO353_05735at 1268.216 kb on + strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735at 1268.216 kb on - strand, within AO353_05735

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,265,968 + -0.7
1,265,983 + +0.5
1,265,984 - +0.5
1,265,984 - -1.6
1,265,990 + -1.3
1,266,063 + +0.1
1,266,063 + -1.5
1,266,063 + +0.3
1,266,064 - +0.1
1,266,064 - +0.1
1,266,064 - -0.8
1,266,089 + +0.1
1,266,089 + -0.6
1,266,090 - -0.8
1,266,132 + -0.8
1,266,132 + -0.5
1,266,132 + -2.2
1,266,132 + -0.2
1,266,133 - +0.2
1,266,133 - +0.4
1,266,133 - +1.1
1,266,133 - +1.7
1,266,139 + +0.1
1,266,140 - -0.1
1,266,214 + AO353_05725 0.11 +0.7
1,266,214 + AO353_05725 0.11 +0.1
1,266,214 + AO353_05725 0.11 -0.0
1,266,214 + AO353_05725 0.11 -0.5
1,266,215 - AO353_05725 0.11 +0.5
1,266,215 - AO353_05725 0.11 +2.5
1,266,215 - AO353_05725 0.11 +0.7
1,266,215 - AO353_05725 0.11 +0.8
1,266,215 - AO353_05725 0.11 +0.6
1,266,215 - AO353_05725 0.11 +1.1
1,266,215 - AO353_05725 0.11 +0.1
1,266,265 + AO353_05725 0.29 -0.3
1,266,265 + AO353_05725 0.29 -0.0
1,266,265 + AO353_05725 0.29 +0.3
1,266,265 + AO353_05725 0.29 -1.5
1,266,265 + AO353_05725 0.29 -1.8
1,266,266 - AO353_05725 0.29 -0.2
1,266,266 - AO353_05725 0.29 +0.8
1,266,266 - AO353_05725 0.29 -0.6
1,266,266 - AO353_05725 0.29 -0.4
1,266,266 - AO353_05725 0.29 -0.3
1,266,378 - AO353_05725 0.70 +0.4
1,266,378 - AO353_05725 0.70 +1.3
1,266,378 - AO353_05725 0.70 -0.4
1,266,516 + -0.9
1,266,516 + +0.2
1,266,516 + -0.6
1,266,591 - -1.0
1,266,643 + -0.3
1,266,644 - -1.5
1,266,645 + -1.8
1,266,645 + -0.4
1,266,645 + +0.4
1,266,773 + -0.6
1,266,773 + -0.4
1,266,773 + -0.9
1,266,795 - +0.7
1,266,872 - -2.5
1,266,875 - -1.3
1,266,892 + -1.5
1,266,892 + -1.6
1,266,892 + -1.5
1,266,972 + +0.1
1,267,067 + AO353_05730 0.40 -1.6
1,267,067 + AO353_05730 0.40 +1.4
1,267,067 + AO353_05730 0.40 +0.5
1,267,067 + AO353_05730 0.40 -0.5
1,267,067 + AO353_05730 0.40 +0.3
1,267,068 - AO353_05730 0.41 -1.6
1,267,068 - AO353_05730 0.41 -0.1
1,267,068 - AO353_05730 0.41 -0.9
1,267,068 - AO353_05730 0.41 -1.1
1,267,068 - AO353_05730 0.41 -0.3
1,267,068 - AO353_05730 0.41 -0.1
1,267,068 - AO353_05730 0.41 +0.5
1,267,109 - AO353_05730 0.56 -1.8
1,267,170 - AO353_05730 0.78 -1.8
1,267,197 + AO353_05730 0.88 -2.4
1,267,197 + AO353_05730 0.88 -0.3
1,267,198 - AO353_05730 0.88 -1.0
1,267,198 - AO353_05730 0.88 +1.1
1,267,198 - AO353_05730 0.88 -1.3
1,267,263 + +0.2
1,267,263 + -0.3
1,267,263 + -0.2
1,267,263 + -0.7
1,267,263 + +0.0
1,267,264 - +0.5
1,267,334 + +0.1
1,267,334 + +0.2
1,267,335 - -0.2
1,267,335 - -0.5
1,267,335 - -0.4
1,267,335 - -0.0
1,267,335 - +0.2
1,267,335 - -1.0
1,267,346 + +0.2
1,267,346 + +0.9
1,267,413 + +0.2
1,267,413 + +0.1
1,267,414 - +0.3
1,267,414 - -0.1
1,267,417 + +0.5
1,267,418 - +0.3
1,267,418 - +0.9
1,267,436 + -0.3
1,267,436 + +0.1
1,267,566 + +0.6
1,267,571 - -0.7
1,267,749 + AO353_05735 0.18 +0.9
1,267,762 + AO353_05735 0.19 +0.9
1,267,793 - AO353_05735 0.22 -0.4
1,267,897 + AO353_05735 0.30 +0.4
1,267,912 - AO353_05735 0.31 +0.8
1,267,912 - AO353_05735 0.31 -0.7
1,267,952 + AO353_05735 0.34 -1.4
1,267,953 - AO353_05735 0.34 +1.8
1,267,978 - AO353_05735 0.36 +0.9
1,267,978 - AO353_05735 0.36 -1.4
1,268,026 + AO353_05735 0.40 +2.0
1,268,026 + AO353_05735 0.40 +1.0
1,268,026 + AO353_05735 0.40 -0.4
1,268,026 + AO353_05735 0.40 +1.1
1,268,026 + AO353_05735 0.40 -0.2
1,268,026 + AO353_05735 0.40 -0.5
1,268,027 - AO353_05735 0.40 +0.8
1,268,027 - AO353_05735 0.40 +0.7
1,268,027 - AO353_05735 0.40 +0.4
1,268,073 + AO353_05735 0.43 +0.1
1,268,073 + AO353_05735 0.43 +0.1
1,268,073 + AO353_05735 0.43 -0.5
1,268,073 + AO353_05735 0.43 -0.3
1,268,074 - AO353_05735 0.43 +0.1
1,268,074 - AO353_05735 0.43 +0.6
1,268,074 - AO353_05735 0.43 +0.0
1,268,074 - AO353_05735 0.43 -0.1
1,268,074 - AO353_05735 0.43 +0.1
1,268,074 - AO353_05735 0.43 +0.0
1,268,097 + AO353_05735 0.45 +0.9
1,268,097 + AO353_05735 0.45 -0.5
1,268,097 + AO353_05735 0.45 -0.9
1,268,097 + AO353_05735 0.45 -1.2
1,268,097 + AO353_05735 0.45 -0.1
1,268,098 - +0.3
1,268,098 - AO353_05735 0.45 +0.7
1,268,098 - AO353_05735 0.45 -0.5
1,268,103 + AO353_05735 0.45 -0.3
1,268,103 + AO353_05735 0.45 +0.9
1,268,103 + AO353_05735 0.45 +1.3
1,268,103 + AO353_05735 0.45 -0.9
1,268,103 + AO353_05735 0.45 -0.0
1,268,104 - AO353_05735 0.45 +0.1
1,268,104 - AO353_05735 0.45 -0.3
1,268,104 - AO353_05735 0.45 -0.1
1,268,165 + AO353_05735 0.50 -0.6
1,268,165 + AO353_05735 0.50 -0.2
1,268,165 + AO353_05735 0.50 -0.9
1,268,166 - AO353_05735 0.50 -1.2
1,268,166 - AO353_05735 0.50 +1.1
1,268,186 + AO353_05735 0.52 +0.2
1,268,186 + AO353_05735 0.52 -1.3
1,268,186 + AO353_05735 0.52 -0.5
1,268,186 + AO353_05735 0.52 +0.4
1,268,186 + AO353_05735 0.52 +0.8
1,268,186 + AO353_05735 0.52 -0.1
1,268,186 + AO353_05735 0.52 +0.3
1,268,186 + AO353_05735 0.52 -0.2
1,268,186 + AO353_05735 0.52 +0.8
1,268,187 - AO353_05735 0.52 -0.5
1,268,187 - AO353_05735 0.52 -2.0
1,268,187 - AO353_05735 0.52 -0.3
1,268,187 - AO353_05735 0.52 -0.4
1,268,187 - AO353_05735 0.52 +0.1
1,268,187 - AO353_05735 0.52 +0.1
1,268,187 - AO353_05735 0.52 +0.3
1,268,187 - AO353_05735 0.52 -0.1
1,268,187 - AO353_05735 0.52 -0.4
1,268,187 - AO353_05735 0.52 +1.0
1,268,187 - AO353_05735 0.52 -0.2
1,268,190 + AO353_05735 0.52 +0.1
1,268,190 + AO353_05735 0.52 +0.1
1,268,190 + AO353_05735 0.52 +1.1
1,268,190 + AO353_05735 0.52 +1.1
1,268,191 - AO353_05735 0.52 -1.7
1,268,191 - AO353_05735 0.52 -0.7
1,268,191 - AO353_05735 0.52 +0.8
1,268,191 - AO353_05735 0.52 -1.0
1,268,191 - AO353_05735 0.52 -1.5
1,268,191 - AO353_05735 0.52 +0.6
1,268,215 + AO353_05735 0.54 +0.1
1,268,215 + AO353_05735 0.54 +0.4
1,268,215 + AO353_05735 0.54 -0.4
1,268,216 + AO353_05735 0.54 -0.0
1,268,216 - AO353_05735 0.54 +0.3
1,268,216 - AO353_05735 0.54 +0.9
1,268,216 - AO353_05735 0.54 +0.9
1,268,216 - AO353_05735 0.54 -0.7
1,268,216 - AO353_05735 0.54 -0.6
1,268,216 - AO353_05735 0.54 -0.2
1,268,216 - AO353_05735 0.54 +1.5
1,268,216 - AO353_05735 0.54 +0.3
1,268,216 - AO353_05735 0.54 +0.5
1,268,216 - AO353_05735 0.54 -0.1

Or see this region's nucleotide sequence