Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08735

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08730 and MMP_RS08735 are separated by 99 nucleotidesMMP_RS08735 and MMP_RS08740 are separated by 187 nucleotides MMP_RS08730: MMP_RS08730 - F420-non-reducing hydrogenase subunit, at 1,635,430 to 1,636,296 _RS08730 MMP_RS08735: MMP_RS08735 - hydrogenase iron-sulfur subunit, at 1,636,396 to 1,636,800 _RS08735 MMP_RS08740: MMP_RS08740 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 1,636,988 to 1,638,964 _RS08740 Position (kb) 1636 1637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1635.424 kb on + strandat 1635.892 kb on + strandat 1635.999 kb on + strandat 1636.112 kb on + strandat 1636.783 kb on + strandat 1637.178 kb on - strandat 1637.198 kb on - strandat 1637.199 kb on + strandat 1637.199 kb on + strandat 1637.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
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1,635,424 + -4.4
1,635,892 + -4.3
1,635,999 + -3.7
1,636,112 + -4.0
1,636,783 + -2.8
1,637,178 - -3.0
1,637,198 - -3.3
1,637,199 + -2.8
1,637,199 + -3.1
1,637,217 + -4.0

Or see this region's nucleotide sequence