Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04680 and MMP_RS04685 are separated by 66 nucleotides MMP_RS04685 and MMP_RS04690 are separated by 11 nucleotides MMP_RS04690 and MMP_RS09010 are separated by 87 nucleotides MMP_RS09010 and MMP_RS04695 are separated by 35 nucleotides
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
MMP_RS04685: MMP_RS04685 - DUF126 domain-containing protein, at 897,383 to 897,775
_RS04685
MMP_RS04690: MMP_RS04690 - class III signal peptide-containing protein, at 897,787 to 898,014
_RS04690
MMP_RS09010: MMP_RS09010 - hypothetical protein, at 898,102 to 898,260
_RS09010
MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303
_RS04695
Position (kb) 897
898 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 896.414 kb on + strand at 896.504 kb on + strand at 896.575 kb on + strand at 897.237 kb on - strand at 897.265 kb on + strand at 897.270 kb on + strand at 897.271 kb on - strand at 897.271 kb on - strand at 897.272 kb on + strand at 897.316 kb on - strand at 897.360 kb on - strand at 897.364 kb on + strand at 897.426 kb on + strand, within MMP_RS04685 at 897.426 kb on + strand, within MMP_RS04685 at 897.429 kb on + strand, within MMP_RS04685 at 897.432 kb on + strand, within MMP_RS04685 at 897.455 kb on - strand, within MMP_RS04685 at 897.577 kb on + strand, within MMP_RS04685 at 897.631 kb on - strand, within MMP_RS04685 at 897.897 kb on - strand, within MMP_RS04690 at 897.908 kb on - strand, within MMP_RS04690 at 897.914 kb on - strand, within MMP_RS04690 at 897.953 kb on + strand, within MMP_RS04690 at 898.001 kb on - strand at 898.001 kb on - strand at 898.043 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.050 kb on + strand at 898.050 kb on + strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.054 kb on + strand at 898.069 kb on - strand at 898.070 kb on + strand at 898.075 kb on - strand at 898.075 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.080 kb on + strand at 898.080 kb on + strand at 898.082 kb on - strand at 898.098 kb on - strand at 898.099 kb on + strand at 898.099 kb on + strand at 898.129 kb on - strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.165 kb on + strand, within MMP_RS09010 at 898.237 kb on - strand, within MMP_RS09010 at 898.679 kb on - strand, within MMP_RS04695
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations remove 896,414 + -3.3 896,504 + -1.8 896,575 + -3.1 897,237 - -3.1 897,265 + -3.3 897,270 + -4.3 897,271 - -3.4 897,271 - -3.7 897,272 + -3.6 897,316 - -2.5 897,360 - -1.8 897,364 + -3.0 897,426 + MMP_RS04685 0.11 -3.6 897,426 + MMP_RS04685 0.11 -2.4 897,429 + MMP_RS04685 0.12 -3.7 897,432 + MMP_RS04685 0.12 -3.5 897,455 - MMP_RS04685 0.18 -1.9 897,577 + MMP_RS04685 0.49 -2.1 897,631 - MMP_RS04685 0.63 -4.2 897,897 - MMP_RS04690 0.48 -0.8 897,908 - MMP_RS04690 0.53 -0.2 897,914 - MMP_RS04690 0.56 +0.1 897,953 + MMP_RS04690 0.73 -2.2 898,001 - -1.0 898,001 - +1.2 898,043 - -0.7 898,049 - +0.2 898,049 - -0.4 898,049 - +0.1 898,050 + -4.2 898,050 + -4.0 898,051 - +0.0 898,051 - -0.4 898,051 - -0.0 898,054 + -1.4 898,069 - +0.2 898,070 + -0.8 898,075 - +0.2 898,075 - -0.2 898,079 - +0.7 898,079 - +0.1 898,079 - +0.0 898,080 + +0.6 898,080 + -0.0 898,082 - -0.2 898,098 - +0.0 898,099 + +0.7 898,099 + +0.3 898,129 - MMP_RS09010 0.17 -0.5 898,130 + MMP_RS09010 0.18 +0.2 898,130 + MMP_RS09010 0.18 -0.2 898,130 + MMP_RS09010 0.18 +0.6 898,139 - MMP_RS09010 0.23 -0.5 898,139 - MMP_RS09010 0.23 -0.5 898,140 + MMP_RS09010 0.24 -0.6 898,140 + MMP_RS09010 0.24 +0.0 898,165 + MMP_RS09010 0.40 +0.1 898,237 - MMP_RS09010 0.85 +0.0 898,679 - MMP_RS04695 0.38 -2.6
Or see this region's nucleotide sequence