Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02165 and MMP_RS02170 are separated by 14 nucleotides MMP_RS02170 and MMP_RS02175 are separated by 158 nucleotides MMP_RS02175 and MMP_RS02180 are separated by 19 nucleotides
MMP_RS02165: MMP_RS02165 - tRNA-dihydrouridine synthase, at 405,344 to 406,114
_RS02165
MMP_RS02170: MMP_RS02170 - CBS domain-containing protein, at 406,129 to 406,542
_RS02170
MMP_RS02175: MMP_RS02175 - DUF1611 domain-containing protein, at 406,701 to 407,621
_RS02175
MMP_RS02180: MMP_RS02180 - GMC oxidoreductase, at 407,641 to 408,801
_RS02180
Position (kb) 406
407
408 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 405.842 kb on + strand, within MMP_RS02165 at 405.910 kb on - strand, within MMP_RS02165 at 405.910 kb on - strand, within MMP_RS02165 at 405.910 kb on - strand, within MMP_RS02165 at 405.911 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.949 kb on + strand, within MMP_RS02165 at 406.078 kb on + strand at 406.087 kb on - strand at 406.087 kb on - strand at 406.088 kb on + strand at 406.117 kb on + strand at 406.117 kb on + strand at 406.117 kb on + strand at 406.121 kb on - strand at 406.130 kb on - strand at 406.135 kb on - strand at 406.200 kb on - strand, within MMP_RS02170 at 406.220 kb on + strand, within MMP_RS02170 at 406.354 kb on - strand, within MMP_RS02170 at 406.354 kb on - strand, within MMP_RS02170 at 406.509 kb on - strand at 406.562 kb on - strand at 406.566 kb on + strand at 406.592 kb on + strand at 406.602 kb on + strand at 406.626 kb on - strand at 406.770 kb on + strand at 406.772 kb on + strand at 406.772 kb on + strand at 407.408 kb on + strand, within MMP_RS02175 at 407.638 kb on + strand at 407.741 kb on - strand at 407.741 kb on - strand at 407.838 kb on - strand at 407.989 kb on - strand at 407.989 kb on - strand at 407.990 kb on + strand at 408.030 kb on - strand at 408.037 kb on - strand at 408.184 kb on + strand at 408.218 kb on + strand at 408.233 kb on + strand at 408.556 kb on - strand at 408.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations remove 405,842 + MMP_RS02165 0.65 -2.2 405,910 - MMP_RS02165 0.73 -2.1 405,910 - MMP_RS02165 0.73 -2.6 405,910 - MMP_RS02165 0.73 -3.5 405,911 + MMP_RS02165 0.74 -3.0 405,913 + MMP_RS02165 0.74 -2.7 405,913 + MMP_RS02165 0.74 -3.6 405,913 + MMP_RS02165 0.74 -5.6 405,913 + MMP_RS02165 0.74 -3.2 405,913 + MMP_RS02165 0.74 -3.2 405,913 + MMP_RS02165 0.74 -1.6 405,949 + MMP_RS02165 0.78 -2.0 406,078 + -2.3 406,087 - -2.4 406,087 - -1.1 406,088 + -1.5 406,117 + +0.9 406,117 + +0.0 406,117 + +0.6 406,121 - -0.5 406,130 - +0.5 406,135 - -0.1 406,200 - MMP_RS02170 0.17 +0.1 406,220 + MMP_RS02170 0.22 +0.2 406,354 - MMP_RS02170 0.54 -0.1 406,354 - MMP_RS02170 0.54 -0.1 406,509 - +0.4 406,562 - +0.7 406,566 + +0.4 406,592 + -1.1 406,602 + -0.6 406,626 - -1.1 406,770 + -1.1 406,772 + -1.1 406,772 + -0.6 407,408 + MMP_RS02175 0.77 -3.2 407,638 + +0.2 407,741 - -5.9 407,741 - -2.2 407,838 - -3.4 407,989 - -2.6 407,989 - -4.3 407,990 + -5.0 408,030 - -2.3 408,037 - -3.2 408,184 + -3.9 408,218 + -5.3 408,233 + -3.2 408,556 - -5.5 408,557 + -2.6
Or see this region's nucleotide sequence