Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01880 and MMP_RS01885 overlap by 1 nucleotides MMP_RS01885 and MMP_RS01890 are separated by 17 nucleotides
MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515
_RS01880
MMP_RS01885: MMP_RS01885 - Gfo/Idh/MocA family oxidoreductase, at 347,515 to 348,450
_RS01885
MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775
_RS01890
Position (kb) 347
348
349 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 346.545 kb on - strand, within MMP_RS01880 at 346.645 kb on - strand, within MMP_RS01880 at 346.675 kb on + strand, within MMP_RS01880 at 346.724 kb on + strand, within MMP_RS01880 at 346.724 kb on + strand, within MMP_RS01880 at 346.776 kb on - strand, within MMP_RS01880 at 346.925 kb on + strand, within MMP_RS01880 at 346.964 kb on + strand, within MMP_RS01880 at 346.988 kb on + strand, within MMP_RS01880 at 347.020 kb on + strand, within MMP_RS01880 at 347.052 kb on - strand, within MMP_RS01880 at 347.053 kb on + strand, within MMP_RS01880 at 347.053 kb on + strand, within MMP_RS01880 at 347.056 kb on - strand, within MMP_RS01880 at 347.057 kb on + strand, within MMP_RS01880 at 347.057 kb on + strand, within MMP_RS01880 at 347.065 kb on + strand, within MMP_RS01880 at 347.090 kb on + strand, within MMP_RS01880 at 347.460 kb on - strand at 347.461 kb on + strand at 347.474 kb on - strand at 347.475 kb on + strand at 347.477 kb on + strand at 347.510 kb on + strand at 347.683 kb on - strand, within MMP_RS01885 at 347.685 kb on - strand, within MMP_RS01885 at 347.760 kb on + strand, within MMP_RS01885 at 347.792 kb on - strand, within MMP_RS01885 at 347.892 kb on - strand, within MMP_RS01885 at 347.914 kb on + strand, within MMP_RS01885 at 348.070 kb on + strand, within MMP_RS01885 at 348.156 kb on - strand, within MMP_RS01885 at 348.161 kb on - strand, within MMP_RS01885 at 348.161 kb on - strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.181 kb on + strand, within MMP_RS01885 at 348.183 kb on - strand, within MMP_RS01885 at 348.184 kb on + strand, within MMP_RS01885 at 348.184 kb on + strand, within MMP_RS01885 at 348.213 kb on + strand, within MMP_RS01885 at 348.217 kb on + strand, within MMP_RS01885 at 348.241 kb on - strand, within MMP_RS01885 at 348.273 kb on + strand, within MMP_RS01885 at 348.274 kb on - strand, within MMP_RS01885 at 348.275 kb on + strand, within MMP_RS01885 at 348.557 kb on - strand at 348.563 kb on + strand at 348.724 kb on - strand, within MMP_RS01890 at 348.725 kb on + strand, within MMP_RS01890 at 348.771 kb on + strand, within MMP_RS01890 at 348.775 kb on - strand, within MMP_RS01890 at 348.971 kb on - strand, within MMP_RS01890 at 349.041 kb on - strand, within MMP_RS01890 at 349.268 kb on - strand, within MMP_RS01890 at 349.294 kb on - strand, within MMP_RS01890 at 349.370 kb on + strand, within MMP_RS01890 at 349.384 kb on - strand, within MMP_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations remove 346,545 - MMP_RS01880 0.12 -3.2 346,645 - MMP_RS01880 0.21 -4.6 346,675 + MMP_RS01880 0.24 -2.4 346,724 + MMP_RS01880 0.28 -3.3 346,724 + MMP_RS01880 0.28 -3.3 346,776 - MMP_RS01880 0.33 -3.1 346,925 + MMP_RS01880 0.46 -3.7 346,964 + MMP_RS01880 0.50 -2.2 346,988 + MMP_RS01880 0.52 -3.0 347,020 + MMP_RS01880 0.55 -2.9 347,052 - MMP_RS01880 0.58 -2.2 347,053 + MMP_RS01880 0.58 -3.3 347,053 + MMP_RS01880 0.58 -2.8 347,056 - MMP_RS01880 0.58 -3.5 347,057 + MMP_RS01880 0.58 -1.8 347,057 + MMP_RS01880 0.58 -1.2 347,065 + MMP_RS01880 0.59 -3.0 347,090 + MMP_RS01880 0.61 -4.9 347,460 - -1.8 347,461 + -2.9 347,474 - -1.8 347,475 + -0.9 347,477 + -3.5 347,510 + -3.0 347,683 - MMP_RS01885 0.18 -2.1 347,685 - MMP_RS01885 0.18 -1.7 347,760 + MMP_RS01885 0.26 -2.7 347,792 - MMP_RS01885 0.30 -1.5 347,892 - MMP_RS01885 0.40 -3.2 347,914 + MMP_RS01885 0.43 -3.2 348,070 + MMP_RS01885 0.59 -1.5 348,156 - MMP_RS01885 0.68 -4.1 348,161 - MMP_RS01885 0.69 -3.4 348,161 - MMP_RS01885 0.69 -4.6 348,162 + MMP_RS01885 0.69 -2.0 348,162 + MMP_RS01885 0.69 -2.2 348,162 + MMP_RS01885 0.69 -2.4 348,181 + MMP_RS01885 0.71 -1.3 348,183 - MMP_RS01885 0.71 -4.4 348,184 + MMP_RS01885 0.71 -3.7 348,184 + MMP_RS01885 0.71 -4.4 348,213 + MMP_RS01885 0.75 -4.1 348,217 + MMP_RS01885 0.75 -2.9 348,241 - MMP_RS01885 0.78 -3.0 348,273 + MMP_RS01885 0.81 -0.5 348,274 - MMP_RS01885 0.81 -2.8 348,275 + MMP_RS01885 0.81 -4.2 348,557 - -4.6 348,563 + -5.1 348,724 - MMP_RS01890 0.20 -2.3 348,725 + MMP_RS01890 0.20 -2.5 348,771 + MMP_RS01890 0.23 -2.4 348,775 - MMP_RS01890 0.23 -4.6 348,971 - MMP_RS01890 0.38 -2.5 349,041 - MMP_RS01890 0.44 -2.9 349,268 - MMP_RS01890 0.61 -1.7 349,294 - MMP_RS01890 0.63 -3.3 349,370 + MMP_RS01890 0.69 -3.3 349,384 - MMP_RS01890 0.70 -3.3
Or see this region's nucleotide sequence