Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00725 and MMP_RS00730 are separated by 28 nucleotides MMP_RS00730 and MMP_RS00735 are separated by 59 nucleotides
MMP_RS00725: MMP_RS00725 - 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 130,979 to 132,511
_RS00725
MMP_RS00730: MMP_RS00730 - 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB, at 132,540 to 133,565
_RS00730
MMP_RS00735: MMP_RS00735 - 5 10-methenyltetrahydromethanopterin hydrogenase, at 133,625 to 134,689
_RS00735
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1
2 at 131.612 kb on + strand, within MMP_RS00725 at 131.657 kb on + strand, within MMP_RS00725 at 131.738 kb on - strand, within MMP_RS00725 at 131.786 kb on - strand, within MMP_RS00725 at 132.136 kb on - strand, within MMP_RS00725 at 132.392 kb on - strand at 132.439 kb on - strand at 132.582 kb on - strand at 132.583 kb on + strand at 132.583 kb on + strand at 132.583 kb on + strand at 132.583 kb on + strand at 132.899 kb on - strand, within MMP_RS00730 at 132.942 kb on - strand, within MMP_RS00730 at 133.070 kb on - strand, within MMP_RS00730 at 133.104 kb on - strand, within MMP_RS00730 at 133.174 kb on + strand, within MMP_RS00730 at 133.288 kb on + strand, within MMP_RS00730 at 133.362 kb on - strand, within MMP_RS00730 at 133.441 kb on - strand, within MMP_RS00730 at 133.490 kb on - strand at 133.586 kb on - strand at 133.609 kb on - strand at 133.622 kb on - strand at 133.713 kb on + strand at 134.255 kb on - strand, within MMP_RS00735 at 134.255 kb on - strand, within MMP_RS00735 at 134.424 kb on + strand, within MMP_RS00735
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations remove 131,612 + MMP_RS00725 0.41 +1.5 131,657 + MMP_RS00725 0.44 -0.3 131,738 - MMP_RS00725 0.50 +0.2 131,786 - MMP_RS00725 0.53 +0.6 132,136 - MMP_RS00725 0.75 -0.2 132,392 - +0.4 132,439 - +0.2 132,582 - +0.5 132,583 + +1.0 132,583 + -0.4 132,583 + +0.1 132,583 + +0.7 132,899 - MMP_RS00730 0.35 +1.0 132,942 - MMP_RS00730 0.39 +2.0 133,070 - MMP_RS00730 0.52 +0.2 133,104 - MMP_RS00730 0.55 +0.4 133,174 + MMP_RS00730 0.62 +1.5 133,288 + MMP_RS00730 0.73 +0.9 133,362 - MMP_RS00730 0.80 -0.2 133,441 - MMP_RS00730 0.88 -0.6 133,490 - +1.4 133,586 - +0.3 133,609 - +1.4 133,622 - +0.9 133,713 + +0.6 134,255 - MMP_RS00735 0.59 +1.0 134,255 - MMP_RS00735 0.59 +0.9 134,424 + MMP_RS00735 0.75 +0.6
Or see this region's nucleotide sequence