Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00425 and MMP_RS00430 are separated by 69 nucleotides MMP_RS00430 and MMP_RS00435 overlap by 12 nucleotides
MMP_RS00425: MMP_RS00425 - argininosuccinate synthase, at 84,962 to 86,155
_RS00425
MMP_RS00430: MMP_RS00430 - hypothetical protein, at 86,225 to 86,581
_RS00430
MMP_RS00435: MMP_RS00435 - CPBP family intramembrane metalloprotease, at 86,570 to 87,379
_RS00435
Position (kb) 86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 85.434 kb on + strand at 86.476 kb on - strand, within MMP_RS00430 at 86.476 kb on - strand, within MMP_RS00430 at 86.478 kb on - strand, within MMP_RS00430 at 86.610 kb on + strand at 86.673 kb on + strand, within MMP_RS00435 at 86.679 kb on + strand, within MMP_RS00435 at 86.684 kb on - strand, within MMP_RS00435 at 86.734 kb on - strand, within MMP_RS00435 at 86.737 kb on + strand, within MMP_RS00435 at 86.789 kb on - strand, within MMP_RS00435 at 86.790 kb on + strand, within MMP_RS00435 at 86.851 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.856 kb on + strand, within MMP_RS00435 at 86.902 kb on - strand, within MMP_RS00435 at 86.902 kb on - strand, within MMP_RS00435 at 86.940 kb on - strand, within MMP_RS00435 at 86.968 kb on - strand, within MMP_RS00435 at 86.987 kb on - strand, within MMP_RS00435 at 87.110 kb on - strand, within MMP_RS00435 at 87.113 kb on + strand, within MMP_RS00435 at 87.134 kb on - strand, within MMP_RS00435 at 87.218 kb on + strand, within MMP_RS00435 at 87.363 kb on - strand at 87.368 kb on - strand at 87.488 kb on - strand at 87.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations remove 85,434 + -1.8 86,476 - MMP_RS00430 0.70 +0.6 86,476 - MMP_RS00430 0.70 +1.6 86,478 - MMP_RS00430 0.71 -0.4 86,610 + +0.3 86,673 + MMP_RS00435 0.13 +0.5 86,679 + MMP_RS00435 0.13 -0.3 86,684 - MMP_RS00435 0.14 -0.1 86,734 - MMP_RS00435 0.20 +0.7 86,737 + MMP_RS00435 0.21 +1.0 86,789 - MMP_RS00435 0.27 +0.6 86,790 + MMP_RS00435 0.27 +0.2 86,851 - MMP_RS00435 0.35 -0.1 86,855 - MMP_RS00435 0.35 -0.2 86,855 - MMP_RS00435 0.35 +0.6 86,855 - MMP_RS00435 0.35 +0.7 86,855 - MMP_RS00435 0.35 +0.2 86,856 + MMP_RS00435 0.35 +0.2 86,902 - MMP_RS00435 0.41 +0.0 86,902 - MMP_RS00435 0.41 +0.4 86,940 - MMP_RS00435 0.46 -0.0 86,968 - MMP_RS00435 0.49 +0.3 86,987 - MMP_RS00435 0.51 +0.8 87,110 - MMP_RS00435 0.67 -0.2 87,113 + MMP_RS00435 0.67 +0.6 87,134 - MMP_RS00435 0.70 +0.5 87,218 + MMP_RS00435 0.80 +0.6 87,363 - +0.2 87,368 - -0.5 87,488 - +0.2 87,491 + -0.2
Or see this region's nucleotide sequence