Experiment: D-Galacturonic Acid 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06190 and HMPREF1058_RS06185 are separated by 107 nucleotides HMPREF1058_RS06185 and HMPREF1058_RS06180 are separated by 1 nucleotides HMPREF1058_RS06180 and HMPREF1058_RS06175 are separated by 164 nucleotides
HMPREF1058_RS06190: HMPREF1058_RS06190 - aspartate kinase, at 538,864 to 540,183
_RS06190
HMPREF1058_RS06185: HMPREF1058_RS06185 - ATP-binding cassette domain-containing protein, at 540,291 to 541,049
_RS06185
HMPREF1058_RS06180: HMPREF1058_RS06180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 541,051 to 541,662
_RS06180
HMPREF1058_RS06175: HMPREF1058_RS06175 - imidazole glycerol phosphate synthase subunit HisF, at 541,827 to 542,582
_RS06175
Position (kb) 540
541
542 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 539.358 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.409 kb on + strand, within HMPREF1058_RS06190 at 539.410 kb on - strand, within HMPREF1058_RS06190 at 539.526 kb on + strand, within HMPREF1058_RS06190 at 539.527 kb on - strand, within HMPREF1058_RS06190 at 539.615 kb on - strand, within HMPREF1058_RS06190 at 539.710 kb on - strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.937 kb on - strand, within HMPREF1058_RS06190 at 539.937 kb on - strand, within HMPREF1058_RS06190 at 540.027 kb on + strand, within HMPREF1058_RS06190 at 540.029 kb on + strand, within HMPREF1058_RS06190 at 540.085 kb on + strand at 540.116 kb on - strand at 540.124 kb on + strand at 540.160 kb on - strand at 540.173 kb on - strand at 540.219 kb on - strand at 540.222 kb on + strand at 540.315 kb on - strand at 540.315 kb on - strand at 540.315 kb on - strand at 540.370 kb on + strand, within HMPREF1058_RS06185 at 540.371 kb on - strand, within HMPREF1058_RS06185 at 540.818 kb on + strand, within HMPREF1058_RS06185 at 540.819 kb on - strand, within HMPREF1058_RS06185 at 540.876 kb on + strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.975 kb on + strand at 540.993 kb on + strand at 541.010 kb on + strand at 541.011 kb on - strand at 541.012 kb on + strand at 541.014 kb on + strand at 541.014 kb on + strand at 541.015 kb on - strand at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.149 kb on - strand, within HMPREF1058_RS06180 at 541.169 kb on + strand, within HMPREF1058_RS06180 at 541.328 kb on - strand, within HMPREF1058_RS06180 at 541.377 kb on + strand, within HMPREF1058_RS06180 at 541.377 kb on + strand, within HMPREF1058_RS06180 at 541.378 kb on - strand, within HMPREF1058_RS06180 at 541.396 kb on + strand, within HMPREF1058_RS06180 at 541.396 kb on + strand, within HMPREF1058_RS06180 at 541.397 kb on - strand, within HMPREF1058_RS06180 at 541.414 kb on + strand, within HMPREF1058_RS06180 at 541.415 kb on - strand, within HMPREF1058_RS06180 at 541.615 kb on + strand at 541.616 kb on - strand at 541.683 kb on + strand at 541.684 kb on - strand at 541.697 kb on + strand at 541.697 kb on + strand at 541.698 kb on - strand at 541.828 kb on + strand at 541.831 kb on - strand at 541.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid 20 mM (C) remove 539,358 + HMPREF1058_RS06190 0.37 -3.4 539,387 + HMPREF1058_RS06190 0.40 -1.9 539,387 + HMPREF1058_RS06190 0.40 -0.8 539,409 + HMPREF1058_RS06190 0.41 -1.5 539,410 - HMPREF1058_RS06190 0.41 -0.3 539,526 + HMPREF1058_RS06190 0.50 -2.3 539,527 - HMPREF1058_RS06190 0.50 +0.9 539,615 - HMPREF1058_RS06190 0.57 +0.2 539,710 - HMPREF1058_RS06190 0.64 -2.9 539,711 + HMPREF1058_RS06190 0.64 -0.4 539,711 + HMPREF1058_RS06190 0.64 +0.1 539,937 - HMPREF1058_RS06190 0.81 -0.7 539,937 - HMPREF1058_RS06190 0.81 -0.7 540,027 + HMPREF1058_RS06190 0.88 -0.1 540,029 + HMPREF1058_RS06190 0.88 -2.6 540,085 + -3.2 540,116 - -2.5 540,124 + +0.0 540,160 - -2.3 540,173 - -1.6 540,219 - +0.3 540,222 + -1.7 540,315 - +2.9 540,315 - +1.2 540,315 - -1.3 540,370 + HMPREF1058_RS06185 0.10 +0.7 540,371 - HMPREF1058_RS06185 0.11 -3.2 540,818 + HMPREF1058_RS06185 0.69 +1.5 540,819 - HMPREF1058_RS06185 0.70 -0.3 540,876 + HMPREF1058_RS06185 0.77 +1.3 540,877 - HMPREF1058_RS06185 0.77 +1.0 540,877 - HMPREF1058_RS06185 0.77 +0.1 540,877 - HMPREF1058_RS06185 0.77 -0.0 540,975 + +0.4 540,993 + +0.2 541,010 + -0.2 541,011 - -2.0 541,012 + +0.2 541,014 + -1.0 541,014 + +0.1 541,015 - +0.1 541,136 - HMPREF1058_RS06180 0.14 -1.7 541,136 - HMPREF1058_RS06180 0.14 -4.2 541,136 - HMPREF1058_RS06180 0.14 -3.4 541,136 - HMPREF1058_RS06180 0.14 -3.3 541,149 - HMPREF1058_RS06180 0.16 +0.3 541,169 + HMPREF1058_RS06180 0.19 -2.3 541,328 - HMPREF1058_RS06180 0.45 -3.7 541,377 + HMPREF1058_RS06180 0.53 -3.8 541,377 + HMPREF1058_RS06180 0.53 -2.6 541,378 - HMPREF1058_RS06180 0.53 -1.1 541,396 + HMPREF1058_RS06180 0.56 -0.3 541,396 + HMPREF1058_RS06180 0.56 -1.3 541,397 - HMPREF1058_RS06180 0.57 -1.5 541,414 + HMPREF1058_RS06180 0.59 +0.3 541,415 - HMPREF1058_RS06180 0.59 -2.4 541,615 + -1.7 541,616 - -3.6 541,683 + -2.5 541,684 - +0.8 541,697 + -2.9 541,697 + -0.3 541,698 - +1.3 541,828 + -5.0 541,831 - -0.5 541,842 - -1.4
Or see this region's nucleotide sequence