Strain Fitness in Rahnella sp. WP5 around EX31_RS10315

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10310 and EX31_RS10315 are separated by 9 nucleotidesEX31_RS10315 and EX31_RS10320 are separated by 161 nucleotides EX31_RS10310: EX31_RS10310 - 2-hydroxyacid dehydrogenase, at 275,629 to 276,579 _RS10310 EX31_RS10315: EX31_RS10315 - MFS transporter, at 276,589 to 277,905 _RS10315 EX31_RS10320: EX31_RS10320 - galactonate dehydratase, at 278,067 to 279,215 _RS10320 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 275.604 kb on - strandat 275.670 kb on - strandat 275.724 kb on + strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.887 kb on - strand, within EX31_RS10310at 275.923 kb on + strand, within EX31_RS10310at 275.924 kb on - strand, within EX31_RS10310at 276.007 kb on + strand, within EX31_RS10310at 276.007 kb on + strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.026 kb on + strand, within EX31_RS10310at 276.072 kb on + strand, within EX31_RS10310at 276.072 kb on + strand, within EX31_RS10310at 276.073 kb on - strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.076 kb on - strand, within EX31_RS10310at 276.076 kb on - strand, within EX31_RS10310at 276.076 kb on - strand, within EX31_RS10310at 276.154 kb on - strand, within EX31_RS10310at 276.239 kb on - strand, within EX31_RS10310at 276.277 kb on + strand, within EX31_RS10310at 276.333 kb on + strand, within EX31_RS10310at 276.379 kb on + strand, within EX31_RS10310at 276.427 kb on + strand, within EX31_RS10310at 276.428 kb on - strand, within EX31_RS10310at 276.428 kb on - strand, within EX31_RS10310at 276.483 kb on - strand, within EX31_RS10310at 276.483 kb on - strand, within EX31_RS10310at 276.489 kb on - strandat 276.497 kb on + strandat 276.551 kb on - strandat 276.591 kb on - strandat 276.632 kb on - strandat 276.653 kb on + strandat 276.653 kb on + strandat 276.654 kb on - strandat 276.654 kb on - strandat 276.654 kb on - strandat 276.658 kb on - strandat 276.658 kb on - strandat 276.700 kb on + strandat 276.824 kb on - strand, within EX31_RS10315at 276.894 kb on + strand, within EX31_RS10315at 276.895 kb on - strand, within EX31_RS10315at 276.900 kb on - strand, within EX31_RS10315at 276.923 kb on + strand, within EX31_RS10315at 276.924 kb on - strand, within EX31_RS10315at 276.926 kb on - strand, within EX31_RS10315at 277.019 kb on + strand, within EX31_RS10315at 277.020 kb on - strand, within EX31_RS10315at 277.023 kb on + strand, within EX31_RS10315at 277.077 kb on + strand, within EX31_RS10315at 277.104 kb on + strand, within EX31_RS10315at 277.178 kb on - strand, within EX31_RS10315at 277.228 kb on + strand, within EX31_RS10315at 277.229 kb on - strand, within EX31_RS10315at 277.321 kb on + strand, within EX31_RS10315at 277.322 kb on - strand, within EX31_RS10315at 277.322 kb on - strand, within EX31_RS10315at 277.420 kb on - strand, within EX31_RS10315at 277.469 kb on + strand, within EX31_RS10315at 277.470 kb on - strand, within EX31_RS10315at 277.470 kb on - strand, within EX31_RS10315at 277.470 kb on - strand, within EX31_RS10315at 277.521 kb on + strand, within EX31_RS10315at 277.521 kb on + strand, within EX31_RS10315at 277.521 kb on + strand, within EX31_RS10315at 277.521 kb on + strand, within EX31_RS10315at 277.522 kb on - strand, within EX31_RS10315at 277.522 kb on - strand, within EX31_RS10315at 277.522 kb on - strand, within EX31_RS10315at 277.523 kb on + strand, within EX31_RS10315at 277.523 kb on + strand, within EX31_RS10315at 277.523 kb on + strand, within EX31_RS10315at 277.523 kb on + strand, within EX31_RS10315at 277.524 kb on - strand, within EX31_RS10315at 277.526 kb on + strand, within EX31_RS10315at 277.526 kb on + strand, within EX31_RS10315at 277.526 kb on + strand, within EX31_RS10315at 277.527 kb on - strand, within EX31_RS10315at 277.527 kb on - strand, within EX31_RS10315at 277.527 kb on - strand, within EX31_RS10315at 277.527 kb on - strand, within EX31_RS10315at 277.527 kb on - strand, within EX31_RS10315at 277.561 kb on - strand, within EX31_RS10315at 277.583 kb on + strand, within EX31_RS10315at 277.584 kb on - strand, within EX31_RS10315at 277.638 kb on + strand, within EX31_RS10315at 277.638 kb on + strand, within EX31_RS10315at 277.639 kb on - strand, within EX31_RS10315at 277.639 kb on - strand, within EX31_RS10315at 277.693 kb on - strand, within EX31_RS10315at 277.724 kb on + strand, within EX31_RS10315at 277.725 kb on - strand, within EX31_RS10315at 277.749 kb on - strand, within EX31_RS10315at 277.749 kb on - strand, within EX31_RS10315at 277.749 kb on - strand, within EX31_RS10315at 277.753 kb on - strand, within EX31_RS10315at 277.839 kb on + strandat 278.021 kb on + strandat 278.059 kb on - strandat 278.232 kb on - strand, within EX31_RS10320at 278.265 kb on - strand, within EX31_RS10320at 278.265 kb on - strand, within EX31_RS10320at 278.267 kb on - strand, within EX31_RS10320at 278.384 kb on - strand, within EX31_RS10320at 278.453 kb on + strand, within EX31_RS10320at 278.531 kb on + strand, within EX31_RS10320at 278.531 kb on + strand, within EX31_RS10320at 278.531 kb on + strand, within EX31_RS10320at 278.532 kb on - strand, within EX31_RS10320at 278.532 kb on - strand, within EX31_RS10320at 278.532 kb on - strand, within EX31_RS10320at 278.560 kb on + strand, within EX31_RS10320at 278.560 kb on + strand, within EX31_RS10320at 278.560 kb on + strand, within EX31_RS10320at 278.561 kb on - strand, within EX31_RS10320at 278.594 kb on + strand, within EX31_RS10320at 278.594 kb on + strand, within EX31_RS10320at 278.599 kb on - strand, within EX31_RS10320at 278.642 kb on + strand, within EX31_RS10320at 278.642 kb on + strand, within EX31_RS10320at 278.643 kb on - strand, within EX31_RS10320at 278.691 kb on - strand, within EX31_RS10320at 278.754 kb on + strand, within EX31_RS10320at 278.867 kb on - strand, within EX31_RS10320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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275,604 - -0.2
275,670 - +0.4
275,724 + EX31_RS10310 0.10 -0.5
275,725 - EX31_RS10310 0.10 +0.5
275,725 - EX31_RS10310 0.10 +0.6
275,725 - EX31_RS10310 0.10 +2.0
275,725 - EX31_RS10310 0.10 +0.6
275,887 - EX31_RS10310 0.27 +0.9
275,923 + EX31_RS10310 0.31 +0.2
275,924 - EX31_RS10310 0.31 -0.7
276,007 + EX31_RS10310 0.40 -0.2
276,007 + EX31_RS10310 0.40 -0.9
276,008 - EX31_RS10310 0.40 +0.1
276,008 - EX31_RS10310 0.40 +0.4
276,008 - EX31_RS10310 0.40 -0.0
276,008 - EX31_RS10310 0.40 +0.9
276,008 - EX31_RS10310 0.40 +0.4
276,008 - EX31_RS10310 0.40 +0.6
276,026 + EX31_RS10310 0.42 +0.4
276,072 + EX31_RS10310 0.47 -0.6
276,072 + EX31_RS10310 0.47 +3.0
276,073 - EX31_RS10310 0.47 -1.6
276,075 + EX31_RS10310 0.47 -1.2
276,075 + EX31_RS10310 0.47 +0.8
276,075 + EX31_RS10310 0.47 +0.7
276,075 + EX31_RS10310 0.47 +0.5
276,076 - EX31_RS10310 0.47 -0.9
276,076 - EX31_RS10310 0.47 -0.5
276,076 - EX31_RS10310 0.47 -2.8
276,154 - EX31_RS10310 0.55 +1.5
276,239 - EX31_RS10310 0.64 +1.1
276,277 + EX31_RS10310 0.68 -1.4
276,333 + EX31_RS10310 0.74 -0.6
276,379 + EX31_RS10310 0.79 +0.4
276,427 + EX31_RS10310 0.84 +0.9
276,428 - EX31_RS10310 0.84 -1.5
276,428 - EX31_RS10310 0.84 +0.3
276,483 - EX31_RS10310 0.90 -1.4
276,483 - EX31_RS10310 0.90 -0.7
276,489 - +0.7
276,497 + +0.6
276,551 - -1.2
276,591 - -1.0
276,632 - +0.3
276,653 + -0.2
276,653 + +1.4
276,654 - +0.1
276,654 - +1.7
276,654 - +1.2
276,658 - +0.1
276,658 - -0.2
276,700 + -1.2
276,824 - EX31_RS10315 0.18 -0.2
276,894 + EX31_RS10315 0.23 +0.5
276,895 - EX31_RS10315 0.23 +0.1
276,900 - EX31_RS10315 0.24 +0.7
276,923 + EX31_RS10315 0.25 +0.7
276,924 - EX31_RS10315 0.25 +0.6
276,926 - EX31_RS10315 0.26 -0.5
277,019 + EX31_RS10315 0.33 -1.6
277,020 - EX31_RS10315 0.33 +0.8
277,023 + EX31_RS10315 0.33 -1.4
277,077 + EX31_RS10315 0.37 +1.1
277,104 + EX31_RS10315 0.39 +0.9
277,178 - EX31_RS10315 0.45 +1.4
277,228 + EX31_RS10315 0.49 +0.7
277,229 - EX31_RS10315 0.49 +0.2
277,321 + EX31_RS10315 0.56 +0.8
277,322 - EX31_RS10315 0.56 -1.4
277,322 - EX31_RS10315 0.56 -1.5
277,420 - EX31_RS10315 0.63 +1.4
277,469 + EX31_RS10315 0.67 +0.8
277,470 - EX31_RS10315 0.67 -2.4
277,470 - EX31_RS10315 0.67 +0.0
277,470 - EX31_RS10315 0.67 -0.0
277,521 + EX31_RS10315 0.71 +1.3
277,521 + EX31_RS10315 0.71 -0.2
277,521 + EX31_RS10315 0.71 -0.1
277,521 + EX31_RS10315 0.71 -0.1
277,522 - EX31_RS10315 0.71 -0.6
277,522 - EX31_RS10315 0.71 +1.9
277,522 - EX31_RS10315 0.71 +0.4
277,523 + EX31_RS10315 0.71 -0.9
277,523 + EX31_RS10315 0.71 +1.7
277,523 + EX31_RS10315 0.71 +0.6
277,523 + EX31_RS10315 0.71 +2.2
277,524 - EX31_RS10315 0.71 -0.1
277,526 + EX31_RS10315 0.71 +0.4
277,526 + EX31_RS10315 0.71 +0.6
277,526 + EX31_RS10315 0.71 -0.8
277,527 - EX31_RS10315 0.71 +1.2
277,527 - EX31_RS10315 0.71 -0.6
277,527 - EX31_RS10315 0.71 +0.6
277,527 - EX31_RS10315 0.71 -0.7
277,527 - EX31_RS10315 0.71 -1.6
277,561 - EX31_RS10315 0.74 -0.9
277,583 + EX31_RS10315 0.75 +0.6
277,584 - EX31_RS10315 0.76 +0.8
277,638 + EX31_RS10315 0.80 +1.4
277,638 + EX31_RS10315 0.80 +0.9
277,639 - EX31_RS10315 0.80 -0.3
277,639 - EX31_RS10315 0.80 +0.4
277,693 - EX31_RS10315 0.84 +1.2
277,724 + EX31_RS10315 0.86 +0.4
277,725 - EX31_RS10315 0.86 +0.1
277,749 - EX31_RS10315 0.88 +1.4
277,749 - EX31_RS10315 0.88 +0.8
277,749 - EX31_RS10315 0.88 -2.1
277,753 - EX31_RS10315 0.88 -0.7
277,839 + -0.1
278,021 + +0.1
278,059 - -0.0
278,232 - EX31_RS10320 0.14 +0.6
278,265 - EX31_RS10320 0.17 +0.4
278,265 - EX31_RS10320 0.17 -0.3
278,267 - EX31_RS10320 0.17 +1.0
278,384 - EX31_RS10320 0.28 -0.1
278,453 + EX31_RS10320 0.34 +0.1
278,531 + EX31_RS10320 0.40 +0.1
278,531 + EX31_RS10320 0.40 +0.4
278,531 + EX31_RS10320 0.40 +0.2
278,532 - EX31_RS10320 0.40 +2.8
278,532 - EX31_RS10320 0.40 -0.1
278,532 - EX31_RS10320 0.40 +1.1
278,560 + EX31_RS10320 0.43 +0.7
278,560 + EX31_RS10320 0.43 -0.5
278,560 + EX31_RS10320 0.43 -0.4
278,561 - EX31_RS10320 0.43 -1.6
278,594 + EX31_RS10320 0.46 -2.4
278,594 + EX31_RS10320 0.46 -0.1
278,599 - EX31_RS10320 0.46 +0.4
278,642 + EX31_RS10320 0.50 -0.4
278,642 + EX31_RS10320 0.50 +0.0
278,643 - EX31_RS10320 0.50 -0.4
278,691 - EX31_RS10320 0.54 -0.9
278,754 + EX31_RS10320 0.60 +0.2
278,867 - EX31_RS10320 0.70 +0.3

Or see this region's nucleotide sequence