Strain Fitness in Rahnella sp. WP5 around EX31_RS10230

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10225 and EX31_RS10230 are separated by 1 nucleotidesEX31_RS10230 and EX31_RS10235 are separated by 4 nucleotides EX31_RS10225: EX31_RS10225 - ABC transporter ATP-binding protein, at 258,140 to 259,168 _RS10225 EX31_RS10230: EX31_RS10230 - D,D-dipeptide ABC transporter permease, at 259,170 to 260,081 _RS10230 EX31_RS10235: EX31_RS10235 - ABC transporter permease, at 260,086 to 261,102 _RS10235 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1 2at 258.426 kb on - strand, within EX31_RS10225at 258.465 kb on + strand, within EX31_RS10225at 258.465 kb on + strand, within EX31_RS10225at 258.466 kb on - strand, within EX31_RS10225at 258.466 kb on - strand, within EX31_RS10225at 258.466 kb on - strand, within EX31_RS10225at 258.466 kb on - strand, within EX31_RS10225at 258.475 kb on - strand, within EX31_RS10225at 258.520 kb on + strand, within EX31_RS10225at 258.520 kb on + strand, within EX31_RS10225at 258.524 kb on + strand, within EX31_RS10225at 258.525 kb on - strand, within EX31_RS10225at 258.590 kb on - strand, within EX31_RS10225at 258.677 kb on - strand, within EX31_RS10225at 258.895 kb on + strand, within EX31_RS10225at 258.895 kb on + strand, within EX31_RS10225at 258.895 kb on + strand, within EX31_RS10225at 258.895 kb on + strand, within EX31_RS10225at 258.895 kb on + strand, within EX31_RS10225at 258.896 kb on - strand, within EX31_RS10225at 258.896 kb on - strand, within EX31_RS10225at 258.896 kb on - strand, within EX31_RS10225at 258.896 kb on - strand, within EX31_RS10225at 258.896 kb on - strand, within EX31_RS10225at 259.292 kb on + strand, within EX31_RS10230at 259.293 kb on - strand, within EX31_RS10230at 259.293 kb on - strand, within EX31_RS10230at 259.294 kb on + strand, within EX31_RS10230at 259.294 kb on + strand, within EX31_RS10230at 259.294 kb on + strand, within EX31_RS10230at 259.294 kb on + strand, within EX31_RS10230at 259.295 kb on - strand, within EX31_RS10230at 259.295 kb on - strand, within EX31_RS10230at 259.499 kb on + strand, within EX31_RS10230at 259.499 kb on + strand, within EX31_RS10230at 259.499 kb on + strand, within EX31_RS10230at 259.500 kb on - strand, within EX31_RS10230at 259.500 kb on - strand, within EX31_RS10230at 259.500 kb on - strand, within EX31_RS10230at 259.500 kb on - strand, within EX31_RS10230at 259.501 kb on + strand, within EX31_RS10230at 259.501 kb on + strand, within EX31_RS10230at 259.501 kb on + strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.502 kb on - strand, within EX31_RS10230at 259.549 kb on + strand, within EX31_RS10230at 259.550 kb on - strand, within EX31_RS10230at 259.633 kb on - strand, within EX31_RS10230at 259.633 kb on - strand, within EX31_RS10230at 259.784 kb on + strand, within EX31_RS10230at 259.785 kb on - strand, within EX31_RS10230at 259.788 kb on + strand, within EX31_RS10230at 259.789 kb on - strand, within EX31_RS10230at 259.789 kb on - strand, within EX31_RS10230at 259.957 kb on - strand, within EX31_RS10230at 259.987 kb on + strand, within EX31_RS10230at 259.988 kb on - strand, within EX31_RS10230at 259.988 kb on - strand, within EX31_RS10230at 260.123 kb on + strandat 260.123 kb on + strandat 260.123 kb on + strandat 260.123 kb on + strandat 260.123 kb on + strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.124 kb on - strandat 260.129 kb on - strandat 260.129 kb on - strandat 260.157 kb on - strandat 260.157 kb on - strandat 260.229 kb on - strand, within EX31_RS10235at 260.279 kb on + strand, within EX31_RS10235at 260.280 kb on - strand, within EX31_RS10235at 260.400 kb on - strand, within EX31_RS10235at 260.400 kb on - strand, within EX31_RS10235at 260.400 kb on - strand, within EX31_RS10235at 260.400 kb on - strand, within EX31_RS10235at 260.400 kb on - strand, within EX31_RS10235at 260.400 kb on - strand, within EX31_RS10235at 260.462 kb on - strand, within EX31_RS10235at 260.552 kb on + strand, within EX31_RS10235at 260.552 kb on + strand, within EX31_RS10235at 260.552 kb on + strand, within EX31_RS10235at 260.553 kb on - strand, within EX31_RS10235at 260.553 kb on - strand, within EX31_RS10235at 260.553 kb on - strand, within EX31_RS10235at 260.631 kb on - strand, within EX31_RS10235at 260.895 kb on - strand, within EX31_RS10235at 260.913 kb on - strand, within EX31_RS10235at 260.946 kb on + strand, within EX31_RS10235at 260.947 kb on - strand, within EX31_RS10235at 260.947 kb on - strand, within EX31_RS10235at 261.013 kb on - strandat 261.024 kb on + strandat 261.030 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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258,426 - EX31_RS10225 0.28 +0.9
258,465 + EX31_RS10225 0.32 -0.4
258,465 + EX31_RS10225 0.32 -0.0
258,466 - EX31_RS10225 0.32 +0.2
258,466 - EX31_RS10225 0.32 +1.4
258,466 - EX31_RS10225 0.32 -0.4
258,466 - EX31_RS10225 0.32 +1.4
258,475 - EX31_RS10225 0.33 -1.4
258,520 + EX31_RS10225 0.37 +0.6
258,520 + EX31_RS10225 0.37 -1.1
258,524 + EX31_RS10225 0.37 -1.4
258,525 - EX31_RS10225 0.37 +0.6
258,590 - EX31_RS10225 0.44 +0.6
258,677 - EX31_RS10225 0.52 -0.5
258,895 + EX31_RS10225 0.73 +0.8
258,895 + EX31_RS10225 0.73 -0.7
258,895 + EX31_RS10225 0.73 -0.1
258,895 + EX31_RS10225 0.73 +0.2
258,895 + EX31_RS10225 0.73 +0.1
258,896 - EX31_RS10225 0.73 -0.8
258,896 - EX31_RS10225 0.73 +0.4
258,896 - EX31_RS10225 0.73 +1.9
258,896 - EX31_RS10225 0.73 -0.6
258,896 - EX31_RS10225 0.73 -0.4
259,292 + EX31_RS10230 0.13 +0.1
259,293 - EX31_RS10230 0.13 -1.5
259,293 - EX31_RS10230 0.13 +1.6
259,294 + EX31_RS10230 0.14 -0.3
259,294 + EX31_RS10230 0.14 -0.6
259,294 + EX31_RS10230 0.14 -1.3
259,294 + EX31_RS10230 0.14 +0.9
259,295 - EX31_RS10230 0.14 +1.8
259,295 - EX31_RS10230 0.14 -0.2
259,499 + EX31_RS10230 0.36 -0.3
259,499 + EX31_RS10230 0.36 +1.7
259,499 + EX31_RS10230 0.36 -0.4
259,500 - EX31_RS10230 0.36 -0.4
259,500 - EX31_RS10230 0.36 -1.3
259,500 - EX31_RS10230 0.36 +0.7
259,500 - EX31_RS10230 0.36 -1.8
259,501 + EX31_RS10230 0.36 -0.3
259,501 + EX31_RS10230 0.36 -1.4
259,501 + EX31_RS10230 0.36 -0.1
259,502 - EX31_RS10230 0.36 +0.4
259,502 - EX31_RS10230 0.36 -0.6
259,502 - EX31_RS10230 0.36 +1.1
259,502 - EX31_RS10230 0.36 -0.6
259,502 - EX31_RS10230 0.36 -0.0
259,502 - EX31_RS10230 0.36 +0.7
259,502 - EX31_RS10230 0.36 +0.3
259,502 - EX31_RS10230 0.36 +0.3
259,549 + EX31_RS10230 0.42 +1.0
259,550 - EX31_RS10230 0.42 +0.0
259,633 - EX31_RS10230 0.51 +0.9
259,633 - EX31_RS10230 0.51 +0.6
259,784 + EX31_RS10230 0.67 +0.2
259,785 - EX31_RS10230 0.67 -1.0
259,788 + EX31_RS10230 0.68 -1.9
259,789 - EX31_RS10230 0.68 -0.4
259,789 - EX31_RS10230 0.68 -2.5
259,957 - EX31_RS10230 0.86 -0.5
259,987 + EX31_RS10230 0.90 -0.0
259,988 - EX31_RS10230 0.90 -0.2
259,988 - EX31_RS10230 0.90 -0.8
260,123 + +0.7
260,123 + +0.6
260,123 + -0.4
260,123 + -0.9
260,123 + +0.1
260,124 - -1.6
260,124 - +1.4
260,124 - +1.3
260,124 - -1.3
260,124 - +0.2
260,124 - +0.4
260,124 - -0.3
260,124 - -0.0
260,124 - +1.4
260,124 - -0.6
260,124 - -1.6
260,124 - -0.0
260,124 - +1.4
260,129 - -0.1
260,129 - +0.9
260,157 - -0.3
260,157 - +0.4
260,229 - EX31_RS10235 0.14 -1.6
260,279 + EX31_RS10235 0.19 -1.2
260,280 - EX31_RS10235 0.19 +1.1
260,400 - EX31_RS10235 0.31 +0.9
260,400 - EX31_RS10235 0.31 +0.7
260,400 - EX31_RS10235 0.31 +0.2
260,400 - EX31_RS10235 0.31 +1.2
260,400 - EX31_RS10235 0.31 -0.3
260,400 - EX31_RS10235 0.31 +0.8
260,462 - EX31_RS10235 0.37 +0.3
260,552 + EX31_RS10235 0.46 +0.6
260,552 + EX31_RS10235 0.46 -1.8
260,552 + EX31_RS10235 0.46 -0.8
260,553 - EX31_RS10235 0.46 +0.1
260,553 - EX31_RS10235 0.46 +0.4
260,553 - EX31_RS10235 0.46 +0.3
260,631 - EX31_RS10235 0.54 +2.0
260,895 - EX31_RS10235 0.80 +0.4
260,913 - EX31_RS10235 0.81 +0.1
260,946 + EX31_RS10235 0.85 +0.5
260,947 - EX31_RS10235 0.85 -1.1
260,947 - EX31_RS10235 0.85 +0.8
261,013 - +1.1
261,024 + -0.3
261,030 + +2.0

Or see this region's nucleotide sequence