Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00899 and CCNA_00900 are separated by 198 nucleotides CCNA_00900 and CCNA_00901 are separated by 269 nucleotides
CCNA_00899: CCNA_00899 - bacterial peptide chain Release factor 1 (RF-1), at 977,024 to 978,094
_00899
CCNA_00900: CCNA_00900 - CHASE4-family GGDEF/EAL protein, at 978,293 to 980,500
_00900
CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606
_00901
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 978.220 kb on + strand at 978.220 kb on + strand at 978.220 kb on + strand at 978.220 kb on + strand at 978.228 kb on - strand at 978.228 kb on - strand at 978.230 kb on + strand at 978.233 kb on - strand at 978.237 kb on + strand at 978.245 kb on - strand at 978.245 kb on - strand at 978.247 kb on + strand at 978.274 kb on + strand at 978.282 kb on - strand at 978.298 kb on - strand at 978.300 kb on + strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.343 kb on + strand at 978.376 kb on - strand at 978.381 kb on - strand at 978.381 kb on - strand at 978.390 kb on - strand at 978.412 kb on - strand at 978.412 kb on - strand at 978.436 kb on + strand at 978.444 kb on - strand at 978.445 kb on + strand at 978.542 kb on + strand at 978.555 kb on + strand, within CCNA_00900 at 978.563 kb on + strand, within CCNA_00900 at 978.620 kb on - strand, within CCNA_00900 at 978.630 kb on - strand, within CCNA_00900 at 978.665 kb on - strand, within CCNA_00900 at 978.706 kb on - strand, within CCNA_00900 at 978.735 kb on + strand, within CCNA_00900 at 978.748 kb on + strand, within CCNA_00900 at 978.776 kb on + strand, within CCNA_00900 at 978.781 kb on + strand, within CCNA_00900 at 978.789 kb on - strand, within CCNA_00900 at 978.789 kb on - strand, within CCNA_00900 at 978.789 kb on - strand, within CCNA_00900 at 978.811 kb on + strand, within CCNA_00900 at 978.811 kb on + strand, within CCNA_00900 at 978.811 kb on + strand, within CCNA_00900 at 978.819 kb on - strand, within CCNA_00900 at 978.819 kb on - strand, within CCNA_00900 at 978.866 kb on + strand, within CCNA_00900 at 978.886 kb on + strand, within CCNA_00900 at 978.887 kb on - strand, within CCNA_00900 at 978.926 kb on - strand, within CCNA_00900 at 978.957 kb on - strand, within CCNA_00900 at 978.959 kb on + strand, within CCNA_00900 at 978.967 kb on + strand, within CCNA_00900 at 978.967 kb on - strand, within CCNA_00900 at 978.975 kb on - strand, within CCNA_00900 at 978.990 kb on - strand, within CCNA_00900 at 978.999 kb on + strand, within CCNA_00900 at 978.999 kb on + strand, within CCNA_00900 at 979.033 kb on - strand, within CCNA_00900 at 979.033 kb on - strand, within CCNA_00900 at 979.040 kb on + strand, within CCNA_00900 at 979.040 kb on + strand, within CCNA_00900 at 979.040 kb on + strand, within CCNA_00900 at 979.045 kb on + strand, within CCNA_00900 at 979.048 kb on - strand, within CCNA_00900 at 979.053 kb on - strand, within CCNA_00900 at 979.062 kb on + strand, within CCNA_00900 at 979.081 kb on + strand, within CCNA_00900 at 979.081 kb on + strand, within CCNA_00900 at 979.095 kb on - strand, within CCNA_00900 at 979.104 kb on + strand, within CCNA_00900 at 979.172 kb on + strand, within CCNA_00900 at 979.182 kb on + strand, within CCNA_00900 at 979.185 kb on - strand, within CCNA_00900 at 979.201 kb on + strand, within CCNA_00900 at 979.201 kb on + strand, within CCNA_00900 at 979.209 kb on - strand, within CCNA_00900 at 979.209 kb on - strand, within CCNA_00900 at 979.216 kb on - strand, within CCNA_00900 at 979.216 kb on - strand, within CCNA_00900 at 979.220 kb on + strand, within CCNA_00900 at 979.220 kb on + strand, within CCNA_00900 at 979.220 kb on - strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.310 kb on + strand, within CCNA_00900 at 979.322 kb on + strand at 979.330 kb on - strand at 979.330 kb on - strand, within CCNA_00900 at 979.332 kb on + strand, within CCNA_00900 at 979.332 kb on + strand, within CCNA_00900 at 979.333 kb on + strand, within CCNA_00900 at 979.340 kb on - strand, within CCNA_00900 at 979.341 kb on - strand, within CCNA_00900 at 979.350 kb on - strand, within CCNA_00900 at 979.512 kb on - strand, within CCNA_00900 at 979.516 kb on + strand, within CCNA_00900 at 979.541 kb on + strand, within CCNA_00900 at 979.581 kb on + strand, within CCNA_00900 at 979.621 kb on + strand, within CCNA_00900 at 979.621 kb on + strand, within CCNA_00900 at 979.649 kb on + strand, within CCNA_00900 at 979.649 kb on + strand, within CCNA_00900 at 979.660 kb on + strand, within CCNA_00900 at 979.667 kb on + strand, within CCNA_00900 at 979.700 kb on + strand, within CCNA_00900 at 979.715 kb on + strand, within CCNA_00900 at 979.782 kb on - strand, within CCNA_00900 at 979.798 kb on + strand, within CCNA_00900 at 979.825 kb on - strand, within CCNA_00900 at 979.825 kb on - strand, within CCNA_00900 at 979.832 kb on + strand, within CCNA_00900 at 979.878 kb on + strand, within CCNA_00900 at 979.895 kb on + strand, within CCNA_00900 at 979.902 kb on + strand, within CCNA_00900 at 979.903 kb on - strand, within CCNA_00900 at 979.922 kb on - strand, within CCNA_00900 at 979.973 kb on + strand, within CCNA_00900 at 979.974 kb on + strand, within CCNA_00900 at 979.981 kb on - strand, within CCNA_00900 at 979.981 kb on - strand, within CCNA_00900 at 979.993 kb on + strand, within CCNA_00900 at 980.000 kb on + strand, within CCNA_00900 at 980.048 kb on - strand, within CCNA_00900 at 980.154 kb on + strand at 980.192 kb on + strand, within CCNA_00900 at 980.192 kb on + strand, within CCNA_00900 at 980.192 kb on + strand, within CCNA_00900 at 980.236 kb on + strand, within CCNA_00900 at 980.236 kb on + strand, within CCNA_00900 at 980.244 kb on - strand, within CCNA_00900 at 980.278 kb on + strand, within CCNA_00900 at 980.282 kb on - strand at 980.282 kb on - strand at 980.284 kb on + strand at 980.324 kb on + strand at 980.332 kb on - strand at 980.338 kb on + strand at 980.361 kb on + strand at 980.402 kb on - strand at 980.405 kb on + strand at 980.494 kb on + strand at 980.502 kb on - strand at 980.502 kb on - strand at 980.538 kb on + strand at 980.546 kb on - strand at 980.577 kb on - strand at 980.590 kb on + strand at 980.608 kb on + strand at 980.632 kb on - strand at 980.820 kb on - strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.847 kb on - strand at 980.869 kb on + strand, within CCNA_00901 at 980.874 kb on + strand, within CCNA_00901 at 980.883 kb on - strand, within CCNA_00901 at 980.925 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 981.018 kb on + strand, within CCNA_00901 at 981.024 kb on + strand, within CCNA_00901 at 981.048 kb on + strand, within CCNA_00901 at 981.056 kb on - strand, within CCNA_00901 at 981.093 kb on - strand, within CCNA_00901 at 981.102 kb on + strand, within CCNA_00901 at 981.118 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.154 kb on + strand, within CCNA_00901 at 981.155 kb on + strand, within CCNA_00901 at 981.163 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.228 kb on - strand, within CCNA_00901 at 981.317 kb on + strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.382 kb on - strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.404 kb on - strand, within CCNA_00901 at 981.406 kb on + strand, within CCNA_00901 at 981.407 kb on - strand, within CCNA_00901 at 981.409 kb on - strand, within CCNA_00901 at 981.457 kb on - strand, within CCNA_00901 at 981.488 kb on - strand, within CCNA_00901 at 981.495 kb on + strand, within CCNA_00901
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 978,220 + -0.1 978,220 + +2.9 978,220 + +1.0 978,220 + -0.2 978,228 - +1.3 978,228 - -0.8 978,230 + +0.3 978,233 - -0.3 978,237 + -0.4 978,245 - -0.9 978,245 - +0.2 978,247 + -0.0 978,274 + +0.1 978,282 - -1.6 978,298 - +0.0 978,300 + +0.6 978,300 - +0.0 978,300 - +0.3 978,300 - +0.6 978,300 - -0.2 978,300 - +0.3 978,343 + -0.3 978,376 - +0.7 978,381 - -2.1 978,381 - +0.4 978,390 - -0.0 978,412 - +0.4 978,412 - +0.3 978,436 + +0.5 978,444 - -0.8 978,445 + -0.3 978,542 + +2.3 978,555 + CCNA_00900 0.12 +0.4 978,563 + CCNA_00900 0.12 +0.5 978,620 - CCNA_00900 0.15 +0.5 978,630 - CCNA_00900 0.15 +1.6 978,665 - CCNA_00900 0.17 -2.0 978,706 - CCNA_00900 0.19 -1.0 978,735 + CCNA_00900 0.20 +1.5 978,748 + CCNA_00900 0.21 -0.8 978,776 + CCNA_00900 0.22 -0.1 978,781 + CCNA_00900 0.22 -0.3 978,789 - CCNA_00900 0.22 -2.4 978,789 - CCNA_00900 0.22 +0.5 978,789 - CCNA_00900 0.22 -0.4 978,811 + CCNA_00900 0.23 -0.1 978,811 + CCNA_00900 0.23 -1.2 978,811 + CCNA_00900 0.23 +0.0 978,819 - CCNA_00900 0.24 -0.7 978,819 - CCNA_00900 0.24 +0.9 978,866 + CCNA_00900 0.26 -1.9 978,886 + CCNA_00900 0.27 +2.4 978,887 - CCNA_00900 0.27 +0.0 978,926 - CCNA_00900 0.29 +1.5 978,957 - CCNA_00900 0.30 -0.2 978,959 + CCNA_00900 0.30 +2.0 978,967 + CCNA_00900 0.31 +0.8 978,967 - CCNA_00900 0.31 -3.2 978,975 - CCNA_00900 0.31 +2.3 978,990 - CCNA_00900 0.32 +0.7 978,999 + CCNA_00900 0.32 +2.5 978,999 + CCNA_00900 0.32 +0.7 979,033 - CCNA_00900 0.34 -2.6 979,033 - CCNA_00900 0.34 +2.0 979,040 + CCNA_00900 0.34 +1.2 979,040 + CCNA_00900 0.34 +0.2 979,040 + CCNA_00900 0.34 +0.2 979,045 + CCNA_00900 0.34 -0.7 979,048 - CCNA_00900 0.34 +0.4 979,053 - CCNA_00900 0.34 +0.1 979,062 + CCNA_00900 0.35 +0.2 979,081 + CCNA_00900 0.36 -2.0 979,081 + CCNA_00900 0.36 +0.6 979,095 - CCNA_00900 0.36 +0.9 979,104 + CCNA_00900 0.37 -1.6 979,172 + CCNA_00900 0.40 +0.0 979,182 + CCNA_00900 0.40 -0.1 979,185 - CCNA_00900 0.40 -1.0 979,201 + CCNA_00900 0.41 +0.0 979,201 + CCNA_00900 0.41 -0.3 979,209 - CCNA_00900 0.41 -0.1 979,209 - CCNA_00900 0.41 +0.9 979,216 - CCNA_00900 0.42 +1.8 979,216 - CCNA_00900 0.42 +1.5 979,220 + CCNA_00900 0.42 +0.7 979,220 + CCNA_00900 0.42 +1.5 979,220 - CCNA_00900 0.42 +0.3 979,234 + CCNA_00900 0.43 -0.7 979,234 + CCNA_00900 0.43 +0.5 979,234 + CCNA_00900 0.43 +1.4 979,234 + CCNA_00900 0.43 -0.1 979,310 + CCNA_00900 0.46 +0.6 979,322 + +2.3 979,330 - +2.9 979,330 - CCNA_00900 0.47 +0.7 979,332 + CCNA_00900 0.47 -0.5 979,332 + CCNA_00900 0.47 +1.3 979,333 + CCNA_00900 0.47 +0.5 979,340 - CCNA_00900 0.47 +0.4 979,341 - CCNA_00900 0.47 -0.1 979,350 - CCNA_00900 0.48 -0.1 979,512 - CCNA_00900 0.55 -0.2 979,516 + CCNA_00900 0.55 -1.8 979,541 + CCNA_00900 0.57 -0.3 979,581 + CCNA_00900 0.58 +0.7 979,621 + CCNA_00900 0.60 +0.9 979,621 + CCNA_00900 0.60 +1.6 979,649 + CCNA_00900 0.61 -1.8 979,649 + CCNA_00900 0.61 +0.4 979,660 + CCNA_00900 0.62 +0.4 979,667 + CCNA_00900 0.62 -2.8 979,700 + CCNA_00900 0.64 +1.4 979,715 + CCNA_00900 0.64 -1.0 979,782 - CCNA_00900 0.67 -1.1 979,798 + CCNA_00900 0.68 -0.3 979,825 - CCNA_00900 0.69 +1.0 979,825 - CCNA_00900 0.69 -0.4 979,832 + CCNA_00900 0.70 +0.5 979,878 + CCNA_00900 0.72 +1.3 979,895 + CCNA_00900 0.73 -0.7 979,902 + CCNA_00900 0.73 -1.0 979,903 - CCNA_00900 0.73 -0.5 979,922 - CCNA_00900 0.74 -0.4 979,973 + CCNA_00900 0.76 +1.2 979,974 + CCNA_00900 0.76 -0.6 979,981 - CCNA_00900 0.76 +0.6 979,981 - CCNA_00900 0.76 -1.2 979,993 + CCNA_00900 0.77 +0.8 980,000 + CCNA_00900 0.77 -1.7 980,048 - CCNA_00900 0.79 +0.5 980,154 + +1.9 980,192 + CCNA_00900 0.86 +0.3 980,192 + CCNA_00900 0.86 +1.0 980,192 + CCNA_00900 0.86 +0.9 980,236 + CCNA_00900 0.88 +0.1 980,236 + CCNA_00900 0.88 -0.1 980,244 - CCNA_00900 0.88 -2.0 980,278 + CCNA_00900 0.90 -1.1 980,282 - +0.7 980,282 - +0.3 980,284 + -0.4 980,324 + -0.7 980,332 - +0.7 980,338 + +0.5 980,361 + -0.4 980,402 - -1.2 980,405 + +0.8 980,494 + +0.3 980,502 - -0.4 980,502 - -1.4 980,538 + +0.8 980,546 - +0.4 980,577 - -1.0 980,590 + +0.3 980,608 + -1.1 980,632 - -1.5 980,820 - +2.0 980,822 + +0.8 980,822 + -2.0 980,822 + -0.9 980,822 + -1.2 980,847 - -1.2 980,869 + CCNA_00901 0.12 -0.6 980,874 + CCNA_00901 0.12 -0.2 980,883 - CCNA_00901 0.14 +1.2 980,925 + CCNA_00901 0.19 +0.5 980,971 + CCNA_00901 0.24 -1.3 980,971 + CCNA_00901 0.24 +1.3 980,971 + CCNA_00901 0.24 +0.4 980,979 - CCNA_00901 0.25 +0.7 980,979 - CCNA_00901 0.25 -0.8 980,979 - CCNA_00901 0.25 +0.0 980,979 - CCNA_00901 0.25 +0.5 981,018 + CCNA_00901 0.30 +1.0 981,024 + CCNA_00901 0.30 +1.4 981,048 + CCNA_00901 0.33 -0.4 981,056 - CCNA_00901 0.34 +2.3 981,093 - CCNA_00901 0.39 +1.2 981,102 + CCNA_00901 0.40 +1.8 981,118 + CCNA_00901 0.42 -0.7 981,128 + CCNA_00901 0.43 -0.9 981,128 + CCNA_00901 0.43 -0.2 981,128 + CCNA_00901 0.43 +0.3 981,136 - CCNA_00901 0.44 -0.7 981,136 - CCNA_00901 0.44 -0.7 981,154 + CCNA_00901 0.46 -0.9 981,155 + CCNA_00901 0.46 -1.8 981,163 - CCNA_00901 0.47 +1.5 981,200 - CCNA_00901 0.51 +1.0 981,200 - CCNA_00901 0.51 -0.2 981,223 - CCNA_00901 0.54 -1.0 981,223 - CCNA_00901 0.54 -1.7 981,223 - CCNA_00901 0.54 +2.7 981,228 - CCNA_00901 0.55 +0.4 981,317 + CCNA_00901 0.65 +1.2 981,325 - CCNA_00901 0.66 +0.5 981,325 - CCNA_00901 0.66 -0.6 981,382 - CCNA_00901 0.73 +0.6 981,386 + CCNA_00901 0.74 -0.9 981,386 + CCNA_00901 0.74 +2.0 981,401 + CCNA_00901 0.75 +0.0 981,401 + CCNA_00901 0.75 -0.3 981,401 + CCNA_00901 0.75 +1.3 981,404 - CCNA_00901 0.76 +2.4 981,406 + CCNA_00901 0.76 +1.1 981,407 - CCNA_00901 0.76 -0.5 981,409 - CCNA_00901 0.76 +0.8 981,457 - CCNA_00901 0.82 +0.2 981,488 - CCNA_00901 0.86 -0.4 981,495 + CCNA_00901 0.87 +1.4
Or see this region's nucleotide sequence