Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23085

Experiment: R2A with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23075 and CA265_RS23080 are separated by 27 nucleotidesCA265_RS23080 and CA265_RS23085 are separated by 12 nucleotidesCA265_RS23085 and CA265_RS23090 overlap by 4 nucleotidesCA265_RS23090 and CA265_RS23095 are separated by 219 nucleotides CA265_RS23075: CA265_RS23075 - hypothetical protein, at 5,649,688 to 5,650,086 _RS23075 CA265_RS23080: CA265_RS23080 - hypothetical protein, at 5,650,114 to 5,650,746 _RS23080 CA265_RS23085: CA265_RS23085 - hypothetical protein, at 5,650,759 to 5,652,741 _RS23085 CA265_RS23090: CA265_RS23090 - transcriptional regulator, at 5,652,738 to 5,653,115 _RS23090 CA265_RS23095: CA265_RS23095 - DNA-binding response regulator, at 5,653,335 to 5,653,976 _RS23095 Position (kb) 5650 5651 5652 5653Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5649.822 kb on + strand, within CA265_RS23075at 5649.835 kb on - strand, within CA265_RS23075at 5649.939 kb on - strand, within CA265_RS23075at 5650.002 kb on - strand, within CA265_RS23075at 5650.017 kb on + strand, within CA265_RS23075at 5650.029 kb on + strand, within CA265_RS23075at 5650.038 kb on + strand, within CA265_RS23075at 5650.112 kb on - strandat 5650.115 kb on + strandat 5650.156 kb on - strandat 5650.159 kb on + strandat 5650.159 kb on + strandat 5650.160 kb on - strandat 5650.247 kb on - strand, within CA265_RS23080at 5650.283 kb on + strand, within CA265_RS23080at 5650.284 kb on - strand, within CA265_RS23080at 5650.345 kb on - strand, within CA265_RS23080at 5650.350 kb on + strand, within CA265_RS23080at 5650.350 kb on + strand, within CA265_RS23080at 5650.371 kb on + strand, within CA265_RS23080at 5650.503 kb on + strand, within CA265_RS23080at 5650.504 kb on - strand, within CA265_RS23080at 5650.504 kb on - strand, within CA265_RS23080at 5650.508 kb on - strand, within CA265_RS23080at 5650.508 kb on - strand, within CA265_RS23080at 5650.516 kb on - strand, within CA265_RS23080at 5650.518 kb on + strand, within CA265_RS23080at 5650.518 kb on + strand, within CA265_RS23080at 5650.519 kb on - strand, within CA265_RS23080at 5650.530 kb on + strand, within CA265_RS23080at 5650.534 kb on - strand, within CA265_RS23080at 5650.559 kb on - strand, within CA265_RS23080at 5650.589 kb on + strand, within CA265_RS23080at 5650.608 kb on + strand, within CA265_RS23080at 5650.609 kb on - strand, within CA265_RS23080at 5650.643 kb on - strand, within CA265_RS23080at 5650.656 kb on + strand, within CA265_RS23080at 5650.726 kb on - strandat 5650.726 kb on - strandat 5650.735 kb on + strandat 5650.954 kb on - strandat 5650.961 kb on - strand, within CA265_RS23085at 5651.046 kb on + strand, within CA265_RS23085at 5651.046 kb on + strand, within CA265_RS23085at 5651.047 kb on - strand, within CA265_RS23085at 5651.051 kb on - strand, within CA265_RS23085at 5651.051 kb on - strand, within CA265_RS23085at 5651.052 kb on + strand, within CA265_RS23085at 5651.052 kb on + strand, within CA265_RS23085at 5651.052 kb on + strand, within CA265_RS23085at 5651.052 kb on + strand, within CA265_RS23085at 5651.106 kb on + strand, within CA265_RS23085at 5651.111 kb on + strand, within CA265_RS23085at 5651.116 kb on + strand, within CA265_RS23085at 5651.117 kb on - strand, within CA265_RS23085at 5651.117 kb on - strand, within CA265_RS23085at 5651.171 kb on - strand, within CA265_RS23085at 5651.226 kb on + strand, within CA265_RS23085at 5651.233 kb on + strand, within CA265_RS23085at 5651.282 kb on - strand, within CA265_RS23085at 5651.313 kb on + strand, within CA265_RS23085at 5651.330 kb on + strand, within CA265_RS23085at 5651.335 kb on - strand, within CA265_RS23085at 5651.335 kb on - strand, within CA265_RS23085at 5651.349 kb on + strand, within CA265_RS23085at 5651.350 kb on - strand, within CA265_RS23085at 5651.396 kb on - strand, within CA265_RS23085at 5651.418 kb on + strand, within CA265_RS23085at 5651.448 kb on + strand, within CA265_RS23085at 5651.469 kb on + strand, within CA265_RS23085at 5651.470 kb on - strand, within CA265_RS23085at 5651.470 kb on - strand, within CA265_RS23085at 5651.485 kb on + strandat 5651.554 kb on + strand, within CA265_RS23085at 5651.568 kb on - strand, within CA265_RS23085at 5651.568 kb on - strand, within CA265_RS23085at 5651.568 kb on - strand, within CA265_RS23085at 5651.568 kb on - strand, within CA265_RS23085at 5651.606 kb on - strand, within CA265_RS23085at 5651.651 kb on - strand, within CA265_RS23085at 5651.662 kb on - strand, within CA265_RS23085at 5651.662 kb on - strand, within CA265_RS23085at 5651.709 kb on + strand, within CA265_RS23085at 5651.717 kb on - strand, within CA265_RS23085at 5651.745 kb on - strand, within CA265_RS23085at 5651.752 kb on - strand, within CA265_RS23085at 5651.761 kb on + strand, within CA265_RS23085at 5651.825 kb on - strand, within CA265_RS23085at 5651.923 kb on - strand, within CA265_RS23085at 5651.991 kb on + strand, within CA265_RS23085at 5652.075 kb on + strand, within CA265_RS23085at 5652.103 kb on + strand, within CA265_RS23085at 5652.109 kb on + strand, within CA265_RS23085at 5652.129 kb on + strand, within CA265_RS23085at 5652.204 kb on - strand, within CA265_RS23085at 5652.205 kb on + strand, within CA265_RS23085at 5652.206 kb on - strand, within CA265_RS23085at 5652.225 kb on + strand, within CA265_RS23085at 5652.225 kb on + strand, within CA265_RS23085at 5652.255 kb on + strand, within CA265_RS23085at 5652.256 kb on - strand, within CA265_RS23085at 5652.264 kb on + strand, within CA265_RS23085at 5652.297 kb on + strand, within CA265_RS23085at 5652.382 kb on - strand, within CA265_RS23085at 5652.403 kb on + strand, within CA265_RS23085at 5652.408 kb on + strand, within CA265_RS23085at 5652.420 kb on + strand, within CA265_RS23085at 5652.421 kb on - strand, within CA265_RS23085at 5652.453 kb on + strand, within CA265_RS23085at 5652.478 kb on - strand, within CA265_RS23085at 5652.489 kb on + strand, within CA265_RS23085at 5652.534 kb on + strand, within CA265_RS23085at 5652.543 kb on + strandat 5652.544 kb on - strandat 5652.544 kb on - strandat 5652.546 kb on - strandat 5652.583 kb on + strandat 5652.596 kb on + strandat 5652.598 kb on + strandat 5652.599 kb on - strandat 5652.599 kb on - strandat 5652.604 kb on + strandat 5652.653 kb on + strandat 5652.653 kb on + strandat 5652.654 kb on - strandat 5652.663 kb on + strandat 5652.663 kb on + strandat 5652.674 kb on - strandat 5652.700 kb on + strandat 5652.701 kb on - strandat 5652.704 kb on + strandat 5652.705 kb on - strandat 5652.706 kb on + strandat 5652.722 kb on - strandat 5652.725 kb on + strandat 5652.725 kb on + strandat 5652.833 kb on + strand, within CA265_RS23090at 5652.833 kb on + strand, within CA265_RS23090at 5652.834 kb on - strandat 5652.891 kb on - strand, within CA265_RS23090at 5652.892 kb on + strand, within CA265_RS23090at 5652.919 kb on + strand, within CA265_RS23090at 5652.996 kb on - strand, within CA265_RS23090at 5652.996 kb on - strand, within CA265_RS23090at 5653.001 kb on - strand, within CA265_RS23090at 5653.010 kb on + strand, within CA265_RS23090at 5653.077 kb on - strand, within CA265_RS23090at 5653.098 kb on + strandat 5653.129 kb on - strandat 5653.129 kb on - strandat 5653.131 kb on + strandat 5653.132 kb on - strandat 5653.281 kb on + strandat 5653.336 kb on + strandat 5653.366 kb on + strandat 5653.366 kb on + strandat 5653.367 kb on - strandat 5653.367 kb on - strandat 5653.367 kb on - strandat 5653.367 kb on - strandat 5653.368 kb on + strandat 5653.432 kb on - strand, within CA265_RS23095at 5653.472 kb on + strand, within CA265_RS23095at 5653.473 kb on - strand, within CA265_RS23095at 5653.527 kb on + strand, within CA265_RS23095at 5653.527 kb on + strand, within CA265_RS23095at 5653.591 kb on + strand, within CA265_RS23095at 5653.592 kb on - strand, within CA265_RS23095at 5653.605 kb on + strand, within CA265_RS23095at 5653.606 kb on - strand, within CA265_RS23095at 5653.606 kb on - strand, within CA265_RS23095at 5653.606 kb on - strand, within CA265_RS23095at 5653.626 kb on + strand, within CA265_RS23095at 5653.661 kb on - strand, within CA265_RS23095at 5653.661 kb on - strand, within CA265_RS23095at 5653.661 kb on - strand, within CA265_RS23095at 5653.716 kb on - strand, within CA265_RS23095at 5653.719 kb on + strand, within CA265_RS23095at 5653.735 kb on - strand, within CA265_RS23095at 5653.735 kb on - strand, within CA265_RS23095

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml
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5,649,822 + CA265_RS23075 0.34 -0.3
5,649,835 - CA265_RS23075 0.37 +0.9
5,649,939 - CA265_RS23075 0.63 +0.2
5,650,002 - CA265_RS23075 0.79 -0.7
5,650,017 + CA265_RS23075 0.82 -0.0
5,650,029 + CA265_RS23075 0.85 -0.4
5,650,038 + CA265_RS23075 0.88 -0.8
5,650,112 - +0.5
5,650,115 + +0.3
5,650,156 - -1.6
5,650,159 + +0.3
5,650,159 + -0.4
5,650,160 - +0.1
5,650,247 - CA265_RS23080 0.21 +0.7
5,650,283 + CA265_RS23080 0.27 +0.0
5,650,284 - CA265_RS23080 0.27 -0.3
5,650,345 - CA265_RS23080 0.36 -2.6
5,650,350 + CA265_RS23080 0.37 -0.3
5,650,350 + CA265_RS23080 0.37 -0.6
5,650,371 + CA265_RS23080 0.41 -0.2
5,650,503 + CA265_RS23080 0.61 +0.2
5,650,504 - CA265_RS23080 0.62 -0.9
5,650,504 - CA265_RS23080 0.62 -0.4
5,650,508 - CA265_RS23080 0.62 +0.1
5,650,508 - CA265_RS23080 0.62 +0.3
5,650,516 - CA265_RS23080 0.64 +0.4
5,650,518 + CA265_RS23080 0.64 -0.7
5,650,518 + CA265_RS23080 0.64 -0.5
5,650,519 - CA265_RS23080 0.64 -0.1
5,650,530 + CA265_RS23080 0.66 +0.3
5,650,534 - CA265_RS23080 0.66 -1.0
5,650,559 - CA265_RS23080 0.70 +0.8
5,650,589 + CA265_RS23080 0.75 -0.3
5,650,608 + CA265_RS23080 0.78 +0.0
5,650,609 - CA265_RS23080 0.78 -0.6
5,650,643 - CA265_RS23080 0.84 +0.3
5,650,656 + CA265_RS23080 0.86 +1.6
5,650,726 - +0.8
5,650,726 - -0.1
5,650,735 + +0.1
5,650,954 - +0.0
5,650,961 - CA265_RS23085 0.10 +0.6
5,651,046 + CA265_RS23085 0.14 -0.5
5,651,046 + CA265_RS23085 0.14 -0.4
5,651,047 - CA265_RS23085 0.15 -0.1
5,651,051 - CA265_RS23085 0.15 +0.9
5,651,051 - CA265_RS23085 0.15 +0.5
5,651,052 + CA265_RS23085 0.15 -0.8
5,651,052 + CA265_RS23085 0.15 -0.2
5,651,052 + CA265_RS23085 0.15 -0.1
5,651,052 + CA265_RS23085 0.15 -0.0
5,651,106 + CA265_RS23085 0.17 +0.1
5,651,111 + CA265_RS23085 0.18 -0.3
5,651,116 + CA265_RS23085 0.18 -0.2
5,651,117 - CA265_RS23085 0.18 +0.4
5,651,117 - CA265_RS23085 0.18 -0.2
5,651,171 - CA265_RS23085 0.21 -0.5
5,651,226 + CA265_RS23085 0.24 +0.2
5,651,233 + CA265_RS23085 0.24 +0.4
5,651,282 - CA265_RS23085 0.26 +0.5
5,651,313 + CA265_RS23085 0.28 +0.1
5,651,330 + CA265_RS23085 0.29 -1.0
5,651,335 - CA265_RS23085 0.29 -0.3
5,651,335 - CA265_RS23085 0.29 +0.3
5,651,349 + CA265_RS23085 0.30 -0.6
5,651,350 - CA265_RS23085 0.30 +0.2
5,651,396 - CA265_RS23085 0.32 -0.2
5,651,418 + CA265_RS23085 0.33 -0.2
5,651,448 + CA265_RS23085 0.35 -1.0
5,651,469 + CA265_RS23085 0.36 +0.1
5,651,470 - CA265_RS23085 0.36 +0.3
5,651,470 - CA265_RS23085 0.36 +0.1
5,651,485 + +1.0
5,651,554 + CA265_RS23085 0.40 +0.3
5,651,568 - CA265_RS23085 0.41 -0.1
5,651,568 - CA265_RS23085 0.41 -0.0
5,651,568 - CA265_RS23085 0.41 +0.5
5,651,568 - CA265_RS23085 0.41 -0.7
5,651,606 - CA265_RS23085 0.43 -0.3
5,651,651 - CA265_RS23085 0.45 +0.4
5,651,662 - CA265_RS23085 0.46 -0.6
5,651,662 - CA265_RS23085 0.46 +0.7
5,651,709 + CA265_RS23085 0.48 +0.1
5,651,717 - CA265_RS23085 0.48 +0.3
5,651,745 - CA265_RS23085 0.50 -0.1
5,651,752 - CA265_RS23085 0.50 -0.6
5,651,761 + CA265_RS23085 0.51 -0.2
5,651,825 - CA265_RS23085 0.54 +0.6
5,651,923 - CA265_RS23085 0.59 -1.1
5,651,991 + CA265_RS23085 0.62 -0.0
5,652,075 + CA265_RS23085 0.66 +0.4
5,652,103 + CA265_RS23085 0.68 -0.2
5,652,109 + CA265_RS23085 0.68 +1.2
5,652,129 + CA265_RS23085 0.69 -0.9
5,652,204 - CA265_RS23085 0.73 -0.0
5,652,205 + CA265_RS23085 0.73 -0.2
5,652,206 - CA265_RS23085 0.73 +1.4
5,652,225 + CA265_RS23085 0.74 +0.1
5,652,225 + CA265_RS23085 0.74 +2.9
5,652,255 + CA265_RS23085 0.75 -1.2
5,652,256 - CA265_RS23085 0.75 +0.3
5,652,264 + CA265_RS23085 0.76 -0.4
5,652,297 + CA265_RS23085 0.78 -0.3
5,652,382 - CA265_RS23085 0.82 +0.2
5,652,403 + CA265_RS23085 0.83 -0.1
5,652,408 + CA265_RS23085 0.83 +0.5
5,652,420 + CA265_RS23085 0.84 -0.1
5,652,421 - CA265_RS23085 0.84 +0.2
5,652,453 + CA265_RS23085 0.85 -1.8
5,652,478 - CA265_RS23085 0.87 +0.4
5,652,489 + CA265_RS23085 0.87 +0.5
5,652,534 + CA265_RS23085 0.90 -0.3
5,652,543 + -0.4
5,652,544 - -0.6
5,652,544 - -0.1
5,652,546 - +0.2
5,652,583 + +1.2
5,652,596 + -0.6
5,652,598 + -0.5
5,652,599 - +0.6
5,652,599 - -0.6
5,652,604 + -0.3
5,652,653 + -0.1
5,652,653 + -0.1
5,652,654 - -0.1
5,652,663 + +0.1
5,652,663 + +0.3
5,652,674 - +0.1
5,652,700 + -0.9
5,652,701 - +0.1
5,652,704 + +0.7
5,652,705 - +0.7
5,652,706 + -1.0
5,652,722 - +0.3
5,652,725 + +0.1
5,652,725 + +0.2
5,652,833 + CA265_RS23090 0.25 -0.9
5,652,833 + CA265_RS23090 0.25 -0.7
5,652,834 - -1.2
5,652,891 - CA265_RS23090 0.40 +0.3
5,652,892 + CA265_RS23090 0.41 -0.3
5,652,919 + CA265_RS23090 0.48 -2.1
5,652,996 - CA265_RS23090 0.68 +0.0
5,652,996 - CA265_RS23090 0.68 +0.3
5,653,001 - CA265_RS23090 0.70 -0.7
5,653,010 + CA265_RS23090 0.72 +0.6
5,653,077 - CA265_RS23090 0.90 +0.9
5,653,098 + -0.5
5,653,129 - +1.6
5,653,129 - +0.9
5,653,131 + +0.4
5,653,132 - +0.7
5,653,281 + -0.0
5,653,336 + -0.3
5,653,366 + -0.6
5,653,366 + +0.4
5,653,367 - +0.5
5,653,367 - -0.3
5,653,367 - +0.2
5,653,367 - +0.6
5,653,368 + +0.1
5,653,432 - CA265_RS23095 0.15 -0.4
5,653,472 + CA265_RS23095 0.21 -0.3
5,653,473 - CA265_RS23095 0.21 -0.7
5,653,527 + CA265_RS23095 0.30 -0.5
5,653,527 + CA265_RS23095 0.30 -1.2
5,653,591 + CA265_RS23095 0.40 +0.3
5,653,592 - CA265_RS23095 0.40 -0.8
5,653,605 + CA265_RS23095 0.42 -0.4
5,653,606 - CA265_RS23095 0.42 +0.7
5,653,606 - CA265_RS23095 0.42 +0.4
5,653,606 - CA265_RS23095 0.42 +0.2
5,653,626 + CA265_RS23095 0.45 +0.0
5,653,661 - CA265_RS23095 0.51 +0.5
5,653,661 - CA265_RS23095 0.51 -0.5
5,653,661 - CA265_RS23095 0.51 -0.3
5,653,716 - CA265_RS23095 0.59 +0.1
5,653,719 + CA265_RS23095 0.60 +0.3
5,653,735 - CA265_RS23095 0.62 -1.2
5,653,735 - CA265_RS23095 0.62 -0.4

Or see this region's nucleotide sequence