Experiment: R2A with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23010 and CA265_RS23015 are separated by 48 nucleotides CA265_RS23015 and CA265_RS23020 are separated by 378 nucleotides
CA265_RS23010: CA265_RS23010 - hydrophobe/amphiphile efflux-1 family RND transporter, at 5,633,436 to 5,636,612
_RS23010
CA265_RS23015: CA265_RS23015 - efflux transporter periplasmic adaptor subunit, at 5,636,661 to 5,637,830
_RS23015
CA265_RS23020: CA265_RS23020 - hypothetical protein, at 5,638,209 to 5,639,063
_RS23020
Position (kb) 5636
5637
5638 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 5635.713 kb on + strand, within CA265_RS23010 at 5635.713 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.787 kb on - strand, within CA265_RS23010 at 5635.865 kb on + strand, within CA265_RS23010 at 5635.913 kb on - strand, within CA265_RS23010 at 5636.001 kb on + strand, within CA265_RS23010 at 5636.001 kb on + strand, within CA265_RS23010 at 5636.002 kb on - strand, within CA265_RS23010 at 5636.034 kb on + strand, within CA265_RS23010 at 5636.054 kb on + strand, within CA265_RS23010 at 5636.054 kb on + strand, within CA265_RS23010 at 5636.144 kb on - strand, within CA265_RS23010 at 5636.186 kb on - strand, within CA265_RS23010 at 5636.199 kb on - strand, within CA265_RS23010 at 5636.233 kb on - strand, within CA265_RS23010 at 5636.260 kb on - strand, within CA265_RS23010 at 5636.364 kb on - strand at 5636.383 kb on + strand at 5636.383 kb on + strand at 5636.538 kb on + strand at 5636.539 kb on - strand at 5636.541 kb on + strand at 5636.541 kb on + strand at 5636.548 kb on - strand at 5636.562 kb on - strand at 5636.570 kb on + strand at 5636.570 kb on + strand at 5636.616 kb on + strand at 5636.617 kb on - strand at 5636.627 kb on - strand at 5636.655 kb on - strand at 5636.655 kb on - strand at 5636.753 kb on + strand at 5637.067 kb on + strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.131 kb on + strand, within CA265_RS23015 at 5637.140 kb on + strand, within CA265_RS23015 at 5637.143 kb on - strand, within CA265_RS23015 at 5637.187 kb on + strand, within CA265_RS23015 at 5637.188 kb on - strand, within CA265_RS23015 at 5637.188 kb on - strand, within CA265_RS23015 at 5637.273 kb on - strand, within CA265_RS23015 at 5637.292 kb on - strand, within CA265_RS23015 at 5637.292 kb on - strand, within CA265_RS23015 at 5637.311 kb on + strand, within CA265_RS23015 at 5637.312 kb on - strand, within CA265_RS23015 at 5637.318 kb on + strand, within CA265_RS23015 at 5637.319 kb on - strand, within CA265_RS23015 at 5637.387 kb on + strand, within CA265_RS23015 at 5637.453 kb on + strand, within CA265_RS23015 at 5637.457 kb on + strand, within CA265_RS23015 at 5637.475 kb on - strand, within CA265_RS23015 at 5637.529 kb on + strand, within CA265_RS23015 at 5637.665 kb on - strand, within CA265_RS23015 at 5637.683 kb on + strand, within CA265_RS23015 at 5637.696 kb on + strand, within CA265_RS23015 at 5637.712 kb on + strand, within CA265_RS23015 at 5637.713 kb on - strand, within CA265_RS23015 at 5637.753 kb on - strand at 5637.765 kb on - strand at 5637.790 kb on - strand at 5637.910 kb on - strand at 5637.940 kb on + strand at 5638.069 kb on - strand at 5638.069 kb on - strand at 5638.100 kb on - strand at 5638.114 kb on + strand at 5638.133 kb on + strand at 5638.180 kb on + strand at 5638.181 kb on - strand at 5638.181 kb on - strand at 5638.214 kb on + strand at 5638.242 kb on - strand at 5638.248 kb on + strand at 5638.263 kb on - strand at 5638.345 kb on + strand, within CA265_RS23020 at 5638.345 kb on + strand, within CA265_RS23020 at 5638.368 kb on - strand, within CA265_RS23020 at 5638.402 kb on + strand, within CA265_RS23020 at 5638.402 kb on + strand, within CA265_RS23020 at 5638.403 kb on - strand, within CA265_RS23020 at 5638.451 kb on - strand, within CA265_RS23020 at 5638.477 kb on + strand, within CA265_RS23020 at 5638.482 kb on - strand, within CA265_RS23020 at 5638.534 kb on - strand, within CA265_RS23020 at 5638.571 kb on - strand, within CA265_RS23020 at 5638.572 kb on + strand, within CA265_RS23020 at 5638.572 kb on + strand, within CA265_RS23020 at 5638.573 kb on - strand, within CA265_RS23020 at 5638.573 kb on - strand, within CA265_RS23020 at 5638.651 kb on - strand, within CA265_RS23020 at 5638.651 kb on - strand, within CA265_RS23020 at 5638.658 kb on + strand, within CA265_RS23020 at 5638.659 kb on - strand, within CA265_RS23020 at 5638.735 kb on + strand, within CA265_RS23020 at 5638.735 kb on + strand, within CA265_RS23020 at 5638.736 kb on - strand, within CA265_RS23020 at 5638.736 kb on - strand, within CA265_RS23020 at 5638.736 kb on - strand, within CA265_RS23020 at 5638.741 kb on + strand, within CA265_RS23020 at 5638.741 kb on + strand, within CA265_RS23020 at 5638.742 kb on - strand, within CA265_RS23020 at 5638.742 kb on - strand, within CA265_RS23020 at 5638.744 kb on - strand, within CA265_RS23020 at 5638.803 kb on + strand, within CA265_RS23020 at 5638.825 kb on - strand, within CA265_RS23020
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml remove 5,635,713 + CA265_RS23010 0.72 -1.2 5,635,713 + CA265_RS23010 0.72 -2.8 5,635,758 + CA265_RS23010 0.73 -3.5 5,635,758 + CA265_RS23010 0.73 -1.5 5,635,758 + CA265_RS23010 0.73 -0.8 5,635,758 + CA265_RS23010 0.73 -3.0 5,635,787 - CA265_RS23010 0.74 -1.8 5,635,865 + CA265_RS23010 0.76 -2.6 5,635,913 - CA265_RS23010 0.78 -2.8 5,636,001 + CA265_RS23010 0.81 -2.8 5,636,001 + CA265_RS23010 0.81 -3.6 5,636,002 - CA265_RS23010 0.81 -2.6 5,636,034 + CA265_RS23010 0.82 -0.8 5,636,054 + CA265_RS23010 0.82 -2.2 5,636,054 + CA265_RS23010 0.82 -1.3 5,636,144 - CA265_RS23010 0.85 -3.3 5,636,186 - CA265_RS23010 0.87 -2.9 5,636,199 - CA265_RS23010 0.87 -1.8 5,636,233 - CA265_RS23010 0.88 -0.9 5,636,260 - CA265_RS23010 0.89 -1.9 5,636,364 - -1.5 5,636,383 + -1.1 5,636,383 + -1.3 5,636,538 + -0.2 5,636,539 - -3.2 5,636,541 + -3.6 5,636,541 + -2.6 5,636,548 - -2.6 5,636,562 - -2.4 5,636,570 + -1.0 5,636,570 + -1.5 5,636,616 + -2.0 5,636,617 - -0.8 5,636,627 - -0.5 5,636,655 - -0.6 5,636,655 - -0.9 5,636,753 + -3.6 5,637,067 + CA265_RS23015 0.35 -2.1 5,637,068 - CA265_RS23015 0.35 -1.9 5,637,068 - CA265_RS23015 0.35 -2.3 5,637,068 - CA265_RS23015 0.35 -0.7 5,637,131 + CA265_RS23015 0.40 -2.2 5,637,140 + CA265_RS23015 0.41 -3.3 5,637,143 - CA265_RS23015 0.41 -3.1 5,637,187 + CA265_RS23015 0.45 -2.5 5,637,188 - CA265_RS23015 0.45 -0.7 5,637,188 - CA265_RS23015 0.45 -3.6 5,637,273 - CA265_RS23015 0.52 -2.5 5,637,292 - CA265_RS23015 0.54 -2.2 5,637,292 - CA265_RS23015 0.54 -3.0 5,637,311 + CA265_RS23015 0.56 -1.8 5,637,312 - CA265_RS23015 0.56 -2.4 5,637,318 + CA265_RS23015 0.56 -2.2 5,637,319 - CA265_RS23015 0.56 -2.0 5,637,387 + CA265_RS23015 0.62 -3.9 5,637,453 + CA265_RS23015 0.68 -2.9 5,637,457 + CA265_RS23015 0.68 -2.0 5,637,475 - CA265_RS23015 0.70 -1.5 5,637,529 + CA265_RS23015 0.74 -4.0 5,637,665 - CA265_RS23015 0.86 -2.1 5,637,683 + CA265_RS23015 0.87 -2.1 5,637,696 + CA265_RS23015 0.88 -0.7 5,637,712 + CA265_RS23015 0.90 -2.0 5,637,713 - CA265_RS23015 0.90 -2.5 5,637,753 - -1.4 5,637,765 - -1.2 5,637,790 - -3.2 5,637,910 - +5.6 5,637,940 + +0.2 5,638,069 - +5.9 5,638,069 - +5.9 5,638,100 - +5.8 5,638,114 + -0.7 5,638,133 + -0.5 5,638,180 + +0.1 5,638,181 - +5.6 5,638,181 - +5.2 5,638,214 + -0.2 5,638,242 - +3.7 5,638,248 + -0.8 5,638,263 - +3.9 5,638,345 + CA265_RS23020 0.16 +0.1 5,638,345 + CA265_RS23020 0.16 -1.9 5,638,368 - CA265_RS23020 0.19 +4.0 5,638,402 + CA265_RS23020 0.23 -0.5 5,638,402 + CA265_RS23020 0.23 -0.3 5,638,403 - CA265_RS23020 0.23 +3.6 5,638,451 - CA265_RS23020 0.28 +3.2 5,638,477 + CA265_RS23020 0.31 -0.3 5,638,482 - CA265_RS23020 0.32 +3.2 5,638,534 - CA265_RS23020 0.38 +4.4 5,638,571 - CA265_RS23020 0.42 +3.3 5,638,572 + CA265_RS23020 0.42 +0.0 5,638,572 + CA265_RS23020 0.42 -0.3 5,638,573 - CA265_RS23020 0.43 +3.6 5,638,573 - CA265_RS23020 0.43 +3.0 5,638,651 - CA265_RS23020 0.52 +3.1 5,638,651 - CA265_RS23020 0.52 +3.7 5,638,658 + CA265_RS23020 0.53 -0.4 5,638,659 - CA265_RS23020 0.53 +2.9 5,638,735 + CA265_RS23020 0.62 +0.4 5,638,735 + CA265_RS23020 0.62 +0.1 5,638,736 - CA265_RS23020 0.62 +3.1 5,638,736 - CA265_RS23020 0.62 +3.8 5,638,736 - CA265_RS23020 0.62 +3.1 5,638,741 + CA265_RS23020 0.62 -0.9 5,638,741 + CA265_RS23020 0.62 -0.7 5,638,742 - CA265_RS23020 0.62 +3.2 5,638,742 - CA265_RS23020 0.62 +3.8 5,638,744 - CA265_RS23020 0.63 +2.4 5,638,803 + CA265_RS23020 0.69 -0.5 5,638,825 - CA265_RS23020 0.72 +3.2
Or see this region's nucleotide sequence