Experiment: R2A with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23005 and CA265_RS23010 are separated by 10 nucleotides CA265_RS23010 and CA265_RS23015 are separated by 48 nucleotides
CA265_RS23005: CA265_RS23005 - hypothetical protein, at 5,632,025 to 5,633,425
_RS23005
CA265_RS23010: CA265_RS23010 - hydrophobe/amphiphile efflux-1 family RND transporter, at 5,633,436 to 5,636,612
_RS23010
CA265_RS23015: CA265_RS23015 - efflux transporter periplasmic adaptor subunit, at 5,636,661 to 5,637,830
_RS23015
Position (kb) 5633
5634
5635
5636
5637 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5632.443 kb on - strand, within CA265_RS23005 at 5632.474 kb on + strand, within CA265_RS23005 at 5632.607 kb on - strand, within CA265_RS23005 at 5632.607 kb on - strand, within CA265_RS23005 at 5632.628 kb on + strand, within CA265_RS23005 at 5632.628 kb on + strand, within CA265_RS23005 at 5632.661 kb on - strand, within CA265_RS23005 at 5632.696 kb on + strand, within CA265_RS23005 at 5632.696 kb on + strand, within CA265_RS23005 at 5632.697 kb on - strand, within CA265_RS23005 at 5632.737 kb on + strand, within CA265_RS23005 at 5632.740 kb on - strand, within CA265_RS23005 at 5632.778 kb on + strand, within CA265_RS23005 at 5632.779 kb on - strand, within CA265_RS23005 at 5632.875 kb on - strand, within CA265_RS23005 at 5632.884 kb on + strand, within CA265_RS23005 at 5632.907 kb on + strand, within CA265_RS23005 at 5632.949 kb on + strand, within CA265_RS23005 at 5632.996 kb on + strand, within CA265_RS23005 at 5633.095 kb on + strand, within CA265_RS23005 at 5633.096 kb on - strand, within CA265_RS23005 at 5633.132 kb on + strand, within CA265_RS23005 at 5633.154 kb on - strand, within CA265_RS23005 at 5633.161 kb on + strand, within CA265_RS23005 at 5633.177 kb on - strand, within CA265_RS23005 at 5633.216 kb on + strand, within CA265_RS23005 at 5633.302 kb on + strand at 5633.303 kb on - strand at 5633.309 kb on - strand at 5633.318 kb on + strand at 5633.318 kb on + strand at 5633.410 kb on + strand at 5633.410 kb on + strand at 5633.411 kb on - strand at 5633.411 kb on - strand at 5633.437 kb on + strand at 5633.437 kb on + strand at 5633.464 kb on + strand at 5633.597 kb on + strand at 5633.598 kb on - strand at 5633.604 kb on + strand at 5633.627 kb on + strand at 5633.628 kb on - strand at 5633.661 kb on + strand at 5633.661 kb on + strand at 5633.671 kb on - strand at 5633.712 kb on + strand at 5633.837 kb on + strand, within CA265_RS23010 at 5633.848 kb on + strand, within CA265_RS23010 at 5633.848 kb on + strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.889 kb on + strand, within CA265_RS23010 at 5633.890 kb on - strand, within CA265_RS23010 at 5633.890 kb on - strand, within CA265_RS23010 at 5633.939 kb on + strand, within CA265_RS23010 at 5633.940 kb on - strand, within CA265_RS23010 at 5633.941 kb on + strand, within CA265_RS23010 at 5633.942 kb on - strand, within CA265_RS23010 at 5633.950 kb on + strand, within CA265_RS23010 at 5633.971 kb on + strand, within CA265_RS23010 at 5633.971 kb on + strand, within CA265_RS23010 at 5633.991 kb on + strand, within CA265_RS23010 at 5634.025 kb on - strand, within CA265_RS23010 at 5634.025 kb on - strand, within CA265_RS23010 at 5634.055 kb on + strand, within CA265_RS23010 at 5634.061 kb on + strand, within CA265_RS23010 at 5634.061 kb on + strand, within CA265_RS23010 at 5634.104 kb on + strand, within CA265_RS23010 at 5634.161 kb on + strand, within CA265_RS23010 at 5634.161 kb on + strand, within CA265_RS23010 at 5634.163 kb on + strand, within CA265_RS23010 at 5634.163 kb on + strand, within CA265_RS23010 at 5634.164 kb on - strand, within CA265_RS23010 at 5634.183 kb on - strand, within CA265_RS23010 at 5634.212 kb on + strand, within CA265_RS23010 at 5634.259 kb on + strand, within CA265_RS23010 at 5634.259 kb on + strand, within CA265_RS23010 at 5634.315 kb on + strand, within CA265_RS23010 at 5634.316 kb on - strand, within CA265_RS23010 at 5634.367 kb on + strand, within CA265_RS23010 at 5634.367 kb on + strand, within CA265_RS23010 at 5634.368 kb on - strand, within CA265_RS23010 at 5634.370 kb on + strand, within CA265_RS23010 at 5634.371 kb on - strand, within CA265_RS23010 at 5634.371 kb on - strand, within CA265_RS23010 at 5634.448 kb on + strand, within CA265_RS23010 at 5634.531 kb on + strand, within CA265_RS23010 at 5634.532 kb on - strand, within CA265_RS23010 at 5634.551 kb on + strand, within CA265_RS23010 at 5634.651 kb on + strand, within CA265_RS23010 at 5634.651 kb on + strand, within CA265_RS23010 at 5634.673 kb on - strand, within CA265_RS23010 at 5634.684 kb on - strand, within CA265_RS23010 at 5634.740 kb on + strand, within CA265_RS23010 at 5634.741 kb on - strand, within CA265_RS23010 at 5634.741 kb on - strand, within CA265_RS23010 at 5634.746 kb on - strand, within CA265_RS23010 at 5634.746 kb on - strand, within CA265_RS23010 at 5634.746 kb on - strand, within CA265_RS23010 at 5634.788 kb on + strand, within CA265_RS23010 at 5634.789 kb on - strand, within CA265_RS23010 at 5634.795 kb on - strand, within CA265_RS23010 at 5634.801 kb on + strand, within CA265_RS23010 at 5634.810 kb on + strand, within CA265_RS23010 at 5634.815 kb on + strand, within CA265_RS23010 at 5634.819 kb on + strand, within CA265_RS23010 at 5634.843 kb on - strand, within CA265_RS23010 at 5634.870 kb on - strand, within CA265_RS23010 at 5634.993 kb on + strand, within CA265_RS23010 at 5635.144 kb on - strand, within CA265_RS23010 at 5635.203 kb on + strand, within CA265_RS23010 at 5635.283 kb on + strand, within CA265_RS23010 at 5635.434 kb on + strand, within CA265_RS23010 at 5635.454 kb on + strand, within CA265_RS23010 at 5635.455 kb on - strand, within CA265_RS23010 at 5635.490 kb on + strand, within CA265_RS23010 at 5635.551 kb on - strand, within CA265_RS23010 at 5635.554 kb on + strand, within CA265_RS23010 at 5635.554 kb on + strand, within CA265_RS23010 at 5635.555 kb on - strand, within CA265_RS23010 at 5635.632 kb on + strand, within CA265_RS23010 at 5635.713 kb on + strand, within CA265_RS23010 at 5635.713 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.787 kb on - strand, within CA265_RS23010 at 5635.865 kb on + strand, within CA265_RS23010 at 5635.913 kb on - strand, within CA265_RS23010 at 5636.001 kb on + strand, within CA265_RS23010 at 5636.001 kb on + strand, within CA265_RS23010 at 5636.002 kb on - strand, within CA265_RS23010 at 5636.034 kb on + strand, within CA265_RS23010 at 5636.054 kb on + strand, within CA265_RS23010 at 5636.054 kb on + strand, within CA265_RS23010 at 5636.144 kb on - strand, within CA265_RS23010 at 5636.186 kb on - strand, within CA265_RS23010 at 5636.199 kb on - strand, within CA265_RS23010 at 5636.233 kb on - strand, within CA265_RS23010 at 5636.260 kb on - strand, within CA265_RS23010 at 5636.364 kb on - strand at 5636.383 kb on + strand at 5636.383 kb on + strand at 5636.538 kb on + strand at 5636.539 kb on - strand at 5636.541 kb on + strand at 5636.541 kb on + strand at 5636.548 kb on - strand at 5636.562 kb on - strand at 5636.570 kb on + strand at 5636.570 kb on + strand at 5636.616 kb on + strand at 5636.617 kb on - strand at 5636.627 kb on - strand at 5636.655 kb on - strand at 5636.655 kb on - strand at 5636.753 kb on + strand at 5637.067 kb on + strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.131 kb on + strand, within CA265_RS23015 at 5637.140 kb on + strand, within CA265_RS23015 at 5637.143 kb on - strand, within CA265_RS23015 at 5637.187 kb on + strand, within CA265_RS23015 at 5637.188 kb on - strand, within CA265_RS23015 at 5637.188 kb on - strand, within CA265_RS23015 at 5637.273 kb on - strand, within CA265_RS23015 at 5637.292 kb on - strand, within CA265_RS23015 at 5637.292 kb on - strand, within CA265_RS23015 at 5637.311 kb on + strand, within CA265_RS23015 at 5637.312 kb on - strand, within CA265_RS23015 at 5637.318 kb on + strand, within CA265_RS23015 at 5637.319 kb on - strand, within CA265_RS23015 at 5637.387 kb on + strand, within CA265_RS23015 at 5637.453 kb on + strand, within CA265_RS23015 at 5637.457 kb on + strand, within CA265_RS23015 at 5637.475 kb on - strand, within CA265_RS23015 at 5637.529 kb on + strand, within CA265_RS23015
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml remove 5,632,443 - CA265_RS23005 0.30 -3.0 5,632,474 + CA265_RS23005 0.32 -2.2 5,632,607 - CA265_RS23005 0.42 -0.8 5,632,607 - CA265_RS23005 0.42 -2.2 5,632,628 + CA265_RS23005 0.43 -1.6 5,632,628 + CA265_RS23005 0.43 -4.2 5,632,661 - CA265_RS23005 0.45 +0.6 5,632,696 + CA265_RS23005 0.48 -1.6 5,632,696 + CA265_RS23005 0.48 -2.2 5,632,697 - CA265_RS23005 0.48 -2.1 5,632,737 + CA265_RS23005 0.51 -1.3 5,632,740 - CA265_RS23005 0.51 -1.7 5,632,778 + CA265_RS23005 0.54 -2.2 5,632,779 - CA265_RS23005 0.54 -0.4 5,632,875 - CA265_RS23005 0.61 -3.7 5,632,884 + CA265_RS23005 0.61 -3.2 5,632,907 + CA265_RS23005 0.63 -0.6 5,632,949 + CA265_RS23005 0.66 -1.7 5,632,996 + CA265_RS23005 0.69 -1.6 5,633,095 + CA265_RS23005 0.76 -2.7 5,633,096 - CA265_RS23005 0.76 -1.9 5,633,132 + CA265_RS23005 0.79 -3.1 5,633,154 - CA265_RS23005 0.81 -2.7 5,633,161 + CA265_RS23005 0.81 -2.3 5,633,177 - CA265_RS23005 0.82 -2.4 5,633,216 + CA265_RS23005 0.85 -2.3 5,633,302 + -1.6 5,633,303 - -1.8 5,633,309 - -1.5 5,633,318 + -1.8 5,633,318 + -3.1 5,633,410 + -2.0 5,633,410 + -2.1 5,633,411 - -2.8 5,633,411 - -1.8 5,633,437 + -1.9 5,633,437 + -2.1 5,633,464 + -2.2 5,633,597 + -1.4 5,633,598 - -0.7 5,633,604 + -2.0 5,633,627 + -3.0 5,633,628 - -1.7 5,633,661 + -0.2 5,633,661 + -1.6 5,633,671 - -2.5 5,633,712 + -3.2 5,633,837 + CA265_RS23010 0.13 -1.9 5,633,848 + CA265_RS23010 0.13 -1.3 5,633,848 + CA265_RS23010 0.13 -1.7 5,633,863 - CA265_RS23010 0.13 -2.5 5,633,863 - CA265_RS23010 0.13 -1.8 5,633,863 - CA265_RS23010 0.13 -3.4 5,633,889 + CA265_RS23010 0.14 -2.8 5,633,890 - CA265_RS23010 0.14 -1.3 5,633,890 - CA265_RS23010 0.14 -0.7 5,633,939 + CA265_RS23010 0.16 -1.9 5,633,940 - CA265_RS23010 0.16 -2.5 5,633,941 + CA265_RS23010 0.16 -1.5 5,633,942 - CA265_RS23010 0.16 -1.6 5,633,950 + CA265_RS23010 0.16 -1.6 5,633,971 + CA265_RS23010 0.17 -0.7 5,633,971 + CA265_RS23010 0.17 -2.2 5,633,991 + CA265_RS23010 0.17 -0.7 5,634,025 - CA265_RS23010 0.19 -1.4 5,634,025 - CA265_RS23010 0.19 -2.2 5,634,055 + CA265_RS23010 0.19 -1.2 5,634,061 + CA265_RS23010 0.20 -2.8 5,634,061 + CA265_RS23010 0.20 -2.6 5,634,104 + CA265_RS23010 0.21 +0.0 5,634,161 + CA265_RS23010 0.23 -1.9 5,634,161 + CA265_RS23010 0.23 -3.6 5,634,163 + CA265_RS23010 0.23 -2.8 5,634,163 + CA265_RS23010 0.23 -3.2 5,634,164 - CA265_RS23010 0.23 -2.8 5,634,183 - CA265_RS23010 0.24 -1.0 5,634,212 + CA265_RS23010 0.24 -1.6 5,634,259 + CA265_RS23010 0.26 -3.2 5,634,259 + CA265_RS23010 0.26 -2.5 5,634,315 + CA265_RS23010 0.28 -2.9 5,634,316 - CA265_RS23010 0.28 -2.5 5,634,367 + CA265_RS23010 0.29 -0.7 5,634,367 + CA265_RS23010 0.29 -2.5 5,634,368 - CA265_RS23010 0.29 -1.3 5,634,370 + CA265_RS23010 0.29 -1.4 5,634,371 - CA265_RS23010 0.29 -2.3 5,634,371 - CA265_RS23010 0.29 +1.6 5,634,448 + CA265_RS23010 0.32 -0.8 5,634,531 + CA265_RS23010 0.34 -4.2 5,634,532 - CA265_RS23010 0.34 -2.1 5,634,551 + CA265_RS23010 0.35 -4.0 5,634,651 + CA265_RS23010 0.38 -1.9 5,634,651 + CA265_RS23010 0.38 -1.6 5,634,673 - CA265_RS23010 0.39 -1.4 5,634,684 - CA265_RS23010 0.39 -2.6 5,634,740 + CA265_RS23010 0.41 -3.9 5,634,741 - CA265_RS23010 0.41 -1.9 5,634,741 - CA265_RS23010 0.41 -0.8 5,634,746 - CA265_RS23010 0.41 -2.2 5,634,746 - CA265_RS23010 0.41 -2.2 5,634,746 - CA265_RS23010 0.41 -3.0 5,634,788 + CA265_RS23010 0.43 -0.7 5,634,789 - CA265_RS23010 0.43 -1.5 5,634,795 - CA265_RS23010 0.43 -2.1 5,634,801 + CA265_RS23010 0.43 -1.7 5,634,810 + CA265_RS23010 0.43 -2.6 5,634,815 + CA265_RS23010 0.43 -2.5 5,634,819 + CA265_RS23010 0.44 -2.7 5,634,843 - CA265_RS23010 0.44 -2.1 5,634,870 - CA265_RS23010 0.45 -3.5 5,634,993 + CA265_RS23010 0.49 -2.2 5,635,144 - CA265_RS23010 0.54 -2.5 5,635,203 + CA265_RS23010 0.56 -2.0 5,635,283 + CA265_RS23010 0.58 -3.1 5,635,434 + CA265_RS23010 0.63 -1.6 5,635,454 + CA265_RS23010 0.64 -0.9 5,635,455 - CA265_RS23010 0.64 -1.0 5,635,490 + CA265_RS23010 0.65 -2.3 5,635,551 - CA265_RS23010 0.67 -2.8 5,635,554 + CA265_RS23010 0.67 -2.4 5,635,554 + CA265_RS23010 0.67 -1.2 5,635,555 - CA265_RS23010 0.67 -0.9 5,635,632 + CA265_RS23010 0.69 -3.5 5,635,713 + CA265_RS23010 0.72 -1.2 5,635,713 + CA265_RS23010 0.72 -2.8 5,635,758 + CA265_RS23010 0.73 -3.5 5,635,758 + CA265_RS23010 0.73 -1.5 5,635,758 + CA265_RS23010 0.73 -0.8 5,635,758 + CA265_RS23010 0.73 -3.0 5,635,787 - CA265_RS23010 0.74 -1.8 5,635,865 + CA265_RS23010 0.76 -2.6 5,635,913 - CA265_RS23010 0.78 -2.8 5,636,001 + CA265_RS23010 0.81 -2.8 5,636,001 + CA265_RS23010 0.81 -3.6 5,636,002 - CA265_RS23010 0.81 -2.6 5,636,034 + CA265_RS23010 0.82 -0.8 5,636,054 + CA265_RS23010 0.82 -2.2 5,636,054 + CA265_RS23010 0.82 -1.3 5,636,144 - CA265_RS23010 0.85 -3.3 5,636,186 - CA265_RS23010 0.87 -2.9 5,636,199 - CA265_RS23010 0.87 -1.8 5,636,233 - CA265_RS23010 0.88 -0.9 5,636,260 - CA265_RS23010 0.89 -1.9 5,636,364 - -1.5 5,636,383 + -1.1 5,636,383 + -1.3 5,636,538 + -0.2 5,636,539 - -3.2 5,636,541 + -3.6 5,636,541 + -2.6 5,636,548 - -2.6 5,636,562 - -2.4 5,636,570 + -1.0 5,636,570 + -1.5 5,636,616 + -2.0 5,636,617 - -0.8 5,636,627 - -0.5 5,636,655 - -0.6 5,636,655 - -0.9 5,636,753 + -3.6 5,637,067 + CA265_RS23015 0.35 -2.1 5,637,068 - CA265_RS23015 0.35 -1.9 5,637,068 - CA265_RS23015 0.35 -2.3 5,637,068 - CA265_RS23015 0.35 -0.7 5,637,131 + CA265_RS23015 0.40 -2.2 5,637,140 + CA265_RS23015 0.41 -3.3 5,637,143 - CA265_RS23015 0.41 -3.1 5,637,187 + CA265_RS23015 0.45 -2.5 5,637,188 - CA265_RS23015 0.45 -0.7 5,637,188 - CA265_RS23015 0.45 -3.6 5,637,273 - CA265_RS23015 0.52 -2.5 5,637,292 - CA265_RS23015 0.54 -2.2 5,637,292 - CA265_RS23015 0.54 -3.0 5,637,311 + CA265_RS23015 0.56 -1.8 5,637,312 - CA265_RS23015 0.56 -2.4 5,637,318 + CA265_RS23015 0.56 -2.2 5,637,319 - CA265_RS23015 0.56 -2.0 5,637,387 + CA265_RS23015 0.62 -3.9 5,637,453 + CA265_RS23015 0.68 -2.9 5,637,457 + CA265_RS23015 0.68 -2.0 5,637,475 - CA265_RS23015 0.70 -1.5 5,637,529 + CA265_RS23015 0.74 -4.0
Or see this region's nucleotide sequence