Experiment: R2A with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22995 and CA265_RS23000 are separated by 4 nucleotides CA265_RS23000 and CA265_RS23005 are separated by 159 nucleotides CA265_RS23005 and CA265_RS23010 are separated by 10 nucleotides
CA265_RS22995: CA265_RS22995 - hypothetical protein, at 5,628,061 to 5,631,591
_RS22995
CA265_RS23000: CA265_RS23000 - hypothetical protein, at 5,631,596 to 5,631,865
_RS23000
CA265_RS23005: CA265_RS23005 - hypothetical protein, at 5,632,025 to 5,633,425
_RS23005
CA265_RS23010: CA265_RS23010 - hydrophobe/amphiphile efflux-1 family RND transporter, at 5,633,436 to 5,636,612
_RS23010
Position (kb) 5632
5633
5634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5631.033 kb on + strand, within CA265_RS22995 at 5631.043 kb on - strand, within CA265_RS22995 at 5631.087 kb on + strand, within CA265_RS22995 at 5631.090 kb on + strand, within CA265_RS22995 at 5631.133 kb on - strand, within CA265_RS22995 at 5631.136 kb on + strand, within CA265_RS22995 at 5631.176 kb on + strand, within CA265_RS22995 at 5631.186 kb on - strand, within CA265_RS22995 at 5631.259 kb on - strand at 5631.336 kb on + strand at 5631.337 kb on - strand at 5631.357 kb on + strand at 5631.358 kb on - strand at 5631.361 kb on + strand at 5631.518 kb on - strand at 5631.518 kb on - strand at 5631.522 kb on - strand at 5631.533 kb on + strand at 5631.537 kb on + strand at 5631.537 kb on + strand at 5631.538 kb on - strand at 5631.622 kb on - strand at 5631.631 kb on - strand, within CA265_RS23000 at 5631.664 kb on + strand, within CA265_RS23000 at 5631.692 kb on + strand, within CA265_RS23000 at 5631.692 kb on + strand, within CA265_RS23000 at 5631.693 kb on - strand, within CA265_RS23000 at 5631.693 kb on - strand, within CA265_RS23000 at 5631.703 kb on - strand, within CA265_RS23000 at 5631.714 kb on + strand, within CA265_RS23000 at 5631.715 kb on - strand, within CA265_RS23000 at 5631.715 kb on - strand, within CA265_RS23000 at 5631.758 kb on + strand, within CA265_RS23000 at 5631.759 kb on - strand, within CA265_RS23000 at 5631.804 kb on - strand, within CA265_RS23000 at 5631.882 kb on + strand at 5631.888 kb on - strand at 5631.905 kb on - strand at 5631.920 kb on + strand at 5631.921 kb on - strand at 5631.929 kb on + strand at 5631.934 kb on + strand at 5632.019 kb on + strand at 5632.054 kb on - strand at 5632.056 kb on - strand at 5632.140 kb on - strand at 5632.140 kb on - strand at 5632.165 kb on + strand, within CA265_RS23005 at 5632.172 kb on + strand, within CA265_RS23005 at 5632.173 kb on - strand, within CA265_RS23005 at 5632.263 kb on + strand, within CA265_RS23005 at 5632.315 kb on + strand, within CA265_RS23005 at 5632.413 kb on + strand, within CA265_RS23005 at 5632.443 kb on - strand, within CA265_RS23005 at 5632.474 kb on + strand, within CA265_RS23005 at 5632.607 kb on - strand, within CA265_RS23005 at 5632.607 kb on - strand, within CA265_RS23005 at 5632.628 kb on + strand, within CA265_RS23005 at 5632.628 kb on + strand, within CA265_RS23005 at 5632.661 kb on - strand, within CA265_RS23005 at 5632.696 kb on + strand, within CA265_RS23005 at 5632.696 kb on + strand, within CA265_RS23005 at 5632.697 kb on - strand, within CA265_RS23005 at 5632.737 kb on + strand, within CA265_RS23005 at 5632.740 kb on - strand, within CA265_RS23005 at 5632.778 kb on + strand, within CA265_RS23005 at 5632.779 kb on - strand, within CA265_RS23005 at 5632.875 kb on - strand, within CA265_RS23005 at 5632.884 kb on + strand, within CA265_RS23005 at 5632.907 kb on + strand, within CA265_RS23005 at 5632.949 kb on + strand, within CA265_RS23005 at 5632.996 kb on + strand, within CA265_RS23005 at 5633.095 kb on + strand, within CA265_RS23005 at 5633.096 kb on - strand, within CA265_RS23005 at 5633.132 kb on + strand, within CA265_RS23005 at 5633.154 kb on - strand, within CA265_RS23005 at 5633.161 kb on + strand, within CA265_RS23005 at 5633.177 kb on - strand, within CA265_RS23005 at 5633.216 kb on + strand, within CA265_RS23005 at 5633.302 kb on + strand at 5633.303 kb on - strand at 5633.309 kb on - strand at 5633.318 kb on + strand at 5633.318 kb on + strand at 5633.410 kb on + strand at 5633.410 kb on + strand at 5633.411 kb on - strand at 5633.411 kb on - strand at 5633.437 kb on + strand at 5633.437 kb on + strand at 5633.464 kb on + strand at 5633.597 kb on + strand at 5633.598 kb on - strand at 5633.604 kb on + strand at 5633.627 kb on + strand at 5633.628 kb on - strand at 5633.661 kb on + strand at 5633.661 kb on + strand at 5633.671 kb on - strand at 5633.712 kb on + strand at 5633.837 kb on + strand, within CA265_RS23010 at 5633.848 kb on + strand, within CA265_RS23010 at 5633.848 kb on + strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.889 kb on + strand, within CA265_RS23010 at 5633.890 kb on - strand, within CA265_RS23010 at 5633.890 kb on - strand, within CA265_RS23010 at 5633.939 kb on + strand, within CA265_RS23010 at 5633.940 kb on - strand, within CA265_RS23010 at 5633.941 kb on + strand, within CA265_RS23010 at 5633.942 kb on - strand, within CA265_RS23010 at 5633.950 kb on + strand, within CA265_RS23010 at 5633.971 kb on + strand, within CA265_RS23010 at 5633.971 kb on + strand, within CA265_RS23010 at 5633.991 kb on + strand, within CA265_RS23010 at 5634.025 kb on - strand, within CA265_RS23010 at 5634.025 kb on - strand, within CA265_RS23010 at 5634.055 kb on + strand, within CA265_RS23010 at 5634.061 kb on + strand, within CA265_RS23010 at 5634.061 kb on + strand, within CA265_RS23010 at 5634.104 kb on + strand, within CA265_RS23010 at 5634.161 kb on + strand, within CA265_RS23010 at 5634.161 kb on + strand, within CA265_RS23010 at 5634.163 kb on + strand, within CA265_RS23010 at 5634.163 kb on + strand, within CA265_RS23010 at 5634.164 kb on - strand, within CA265_RS23010 at 5634.183 kb on - strand, within CA265_RS23010 at 5634.212 kb on + strand, within CA265_RS23010 at 5634.259 kb on + strand, within CA265_RS23010 at 5634.259 kb on + strand, within CA265_RS23010 at 5634.315 kb on + strand, within CA265_RS23010 at 5634.316 kb on - strand, within CA265_RS23010 at 5634.367 kb on + strand, within CA265_RS23010 at 5634.367 kb on + strand, within CA265_RS23010 at 5634.368 kb on - strand, within CA265_RS23010 at 5634.370 kb on + strand, within CA265_RS23010 at 5634.371 kb on - strand, within CA265_RS23010 at 5634.371 kb on - strand, within CA265_RS23010
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml remove 5,631,033 + CA265_RS22995 0.84 -0.3 5,631,043 - CA265_RS22995 0.84 +0.4 5,631,087 + CA265_RS22995 0.86 -0.1 5,631,090 + CA265_RS22995 0.86 -0.5 5,631,133 - CA265_RS22995 0.87 +0.2 5,631,136 + CA265_RS22995 0.87 -1.0 5,631,176 + CA265_RS22995 0.88 -0.7 5,631,186 - CA265_RS22995 0.89 -0.5 5,631,259 - -0.6 5,631,336 + -0.8 5,631,337 - +0.6 5,631,357 + -0.4 5,631,358 - +0.0 5,631,361 + -1.0 5,631,518 - +0.0 5,631,518 - +0.3 5,631,522 - -0.4 5,631,533 + -0.9 5,631,537 + -0.7 5,631,537 + +0.6 5,631,538 - -0.5 5,631,622 - -0.3 5,631,631 - CA265_RS23000 0.13 +0.4 5,631,664 + CA265_RS23000 0.25 -1.2 5,631,692 + CA265_RS23000 0.36 -2.4 5,631,692 + CA265_RS23000 0.36 -1.8 5,631,693 - CA265_RS23000 0.36 -0.3 5,631,693 - CA265_RS23000 0.36 -1.0 5,631,703 - CA265_RS23000 0.40 -0.3 5,631,714 + CA265_RS23000 0.44 -0.7 5,631,715 - CA265_RS23000 0.44 -0.3 5,631,715 - CA265_RS23000 0.44 -0.8 5,631,758 + CA265_RS23000 0.60 -1.6 5,631,759 - CA265_RS23000 0.60 +0.9 5,631,804 - CA265_RS23000 0.77 -0.7 5,631,882 + -0.5 5,631,888 - -0.2 5,631,905 - -0.3 5,631,920 + -1.8 5,631,921 - -0.3 5,631,929 + -3.4 5,631,934 + -1.2 5,632,019 + -1.5 5,632,054 - -2.1 5,632,056 - -2.7 5,632,140 - -2.4 5,632,140 - -2.8 5,632,165 + CA265_RS23005 0.10 -2.3 5,632,172 + CA265_RS23005 0.10 -3.2 5,632,173 - CA265_RS23005 0.11 -3.2 5,632,263 + CA265_RS23005 0.17 -2.6 5,632,315 + CA265_RS23005 0.21 -2.0 5,632,413 + CA265_RS23005 0.28 -2.4 5,632,443 - CA265_RS23005 0.30 -3.0 5,632,474 + CA265_RS23005 0.32 -2.2 5,632,607 - CA265_RS23005 0.42 -0.8 5,632,607 - CA265_RS23005 0.42 -2.2 5,632,628 + CA265_RS23005 0.43 -1.6 5,632,628 + CA265_RS23005 0.43 -4.2 5,632,661 - CA265_RS23005 0.45 +0.6 5,632,696 + CA265_RS23005 0.48 -1.6 5,632,696 + CA265_RS23005 0.48 -2.2 5,632,697 - CA265_RS23005 0.48 -2.1 5,632,737 + CA265_RS23005 0.51 -1.3 5,632,740 - CA265_RS23005 0.51 -1.7 5,632,778 + CA265_RS23005 0.54 -2.2 5,632,779 - CA265_RS23005 0.54 -0.4 5,632,875 - CA265_RS23005 0.61 -3.7 5,632,884 + CA265_RS23005 0.61 -3.2 5,632,907 + CA265_RS23005 0.63 -0.6 5,632,949 + CA265_RS23005 0.66 -1.7 5,632,996 + CA265_RS23005 0.69 -1.6 5,633,095 + CA265_RS23005 0.76 -2.7 5,633,096 - CA265_RS23005 0.76 -1.9 5,633,132 + CA265_RS23005 0.79 -3.1 5,633,154 - CA265_RS23005 0.81 -2.7 5,633,161 + CA265_RS23005 0.81 -2.3 5,633,177 - CA265_RS23005 0.82 -2.4 5,633,216 + CA265_RS23005 0.85 -2.3 5,633,302 + -1.6 5,633,303 - -1.8 5,633,309 - -1.5 5,633,318 + -1.8 5,633,318 + -3.1 5,633,410 + -2.0 5,633,410 + -2.1 5,633,411 - -2.8 5,633,411 - -1.8 5,633,437 + -1.9 5,633,437 + -2.1 5,633,464 + -2.2 5,633,597 + -1.4 5,633,598 - -0.7 5,633,604 + -2.0 5,633,627 + -3.0 5,633,628 - -1.7 5,633,661 + -0.2 5,633,661 + -1.6 5,633,671 - -2.5 5,633,712 + -3.2 5,633,837 + CA265_RS23010 0.13 -1.9 5,633,848 + CA265_RS23010 0.13 -1.3 5,633,848 + CA265_RS23010 0.13 -1.7 5,633,863 - CA265_RS23010 0.13 -2.5 5,633,863 - CA265_RS23010 0.13 -1.8 5,633,863 - CA265_RS23010 0.13 -3.4 5,633,889 + CA265_RS23010 0.14 -2.8 5,633,890 - CA265_RS23010 0.14 -1.3 5,633,890 - CA265_RS23010 0.14 -0.7 5,633,939 + CA265_RS23010 0.16 -1.9 5,633,940 - CA265_RS23010 0.16 -2.5 5,633,941 + CA265_RS23010 0.16 -1.5 5,633,942 - CA265_RS23010 0.16 -1.6 5,633,950 + CA265_RS23010 0.16 -1.6 5,633,971 + CA265_RS23010 0.17 -0.7 5,633,971 + CA265_RS23010 0.17 -2.2 5,633,991 + CA265_RS23010 0.17 -0.7 5,634,025 - CA265_RS23010 0.19 -1.4 5,634,025 - CA265_RS23010 0.19 -2.2 5,634,055 + CA265_RS23010 0.19 -1.2 5,634,061 + CA265_RS23010 0.20 -2.8 5,634,061 + CA265_RS23010 0.20 -2.6 5,634,104 + CA265_RS23010 0.21 +0.0 5,634,161 + CA265_RS23010 0.23 -1.9 5,634,161 + CA265_RS23010 0.23 -3.6 5,634,163 + CA265_RS23010 0.23 -2.8 5,634,163 + CA265_RS23010 0.23 -3.2 5,634,164 - CA265_RS23010 0.23 -2.8 5,634,183 - CA265_RS23010 0.24 -1.0 5,634,212 + CA265_RS23010 0.24 -1.6 5,634,259 + CA265_RS23010 0.26 -3.2 5,634,259 + CA265_RS23010 0.26 -2.5 5,634,315 + CA265_RS23010 0.28 -2.9 5,634,316 - CA265_RS23010 0.28 -2.5 5,634,367 + CA265_RS23010 0.29 -0.7 5,634,367 + CA265_RS23010 0.29 -2.5 5,634,368 - CA265_RS23010 0.29 -1.3 5,634,370 + CA265_RS23010 0.29 -1.4 5,634,371 - CA265_RS23010 0.29 -2.3 5,634,371 - CA265_RS23010 0.29 +1.6
Or see this region's nucleotide sequence