Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23000

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
5,630,616	+		CA265_RS22995	0.72	-0.3
5,630,651	+		CA265_RS22995	0.73	-0.6
5,630,651	+		CA265_RS22995	0.73	+0.1
5,630,661	+		CA265_RS22995	0.74	+0.2
5,630,662	-		CA265_RS22995	0.74	-0.4
5,630,748	+		CA265_RS22995	0.76	-0.7
5,630,751	-		CA265_RS22995	0.76	-0.1
5,630,781	+		CA265_RS22995	0.77	-2.0
5,630,807	+		CA265_RS22995	0.78	+0.3
5,630,952	-		CA265_RS22995	0.82	+0.6
5,630,954	-		CA265_RS22995	0.82	-0.2
5,630,954	-		CA265_RS22995	0.82	-0.3
5,631,033	+		CA265_RS22995	0.84	-0.3
5,631,043	-		CA265_RS22995	0.84	+0.4
5,631,087	+		CA265_RS22995	0.86	-0.1
5,631,090	+		CA265_RS22995	0.86	-0.5
5,631,133	-		CA265_RS22995	0.87	+0.2
5,631,136	+		CA265_RS22995	0.87	-1.0
5,631,176	+		CA265_RS22995	0.88	-0.7
5,631,186	-		CA265_RS22995	0.89	-0.5
5,631,259	-				-0.6
5,631,336	+				-0.8
5,631,337	-				+0.6
5,631,357	+				-0.4
5,631,358	-				+0.0
5,631,361	+				-1.0
5,631,518	-				+0.0
5,631,518	-				+0.3
5,631,522	-				-0.4
5,631,533	+				-0.9
5,631,537	+				-0.7
5,631,537	+				+0.6
5,631,538	-				-0.5
5,631,622	-				-0.3
5,631,631	-		CA265_RS23000	0.13	+0.4
5,631,664	+		CA265_RS23000	0.25	-1.2
5,631,692	+		CA265_RS23000	0.36	-2.4
5,631,692	+		CA265_RS23000	0.36	-1.8
5,631,693	-		CA265_RS23000	0.36	-0.3
5,631,693	-		CA265_RS23000	0.36	-1.0
5,631,703	-		CA265_RS23000	0.40	-0.3
5,631,714	+		CA265_RS23000	0.44	-0.7
5,631,715	-		CA265_RS23000	0.44	-0.3
5,631,715	-		CA265_RS23000	0.44	-0.8
5,631,758	+		CA265_RS23000	0.60	-1.6
5,631,759	-		CA265_RS23000	0.60	+0.9
5,631,804	-		CA265_RS23000	0.77	-0.7
5,631,882	+				-0.5
5,631,888	-				-0.2
5,631,905	-				-0.3
5,631,920	+				-1.8
5,631,921	-				-0.3
5,631,929	+				-3.4
5,631,934	+				-1.2
5,632,019	+				-1.5
5,632,054	-				-2.1
5,632,056	-				-2.7
5,632,140	-				-2.4
5,632,140	-				-2.8
5,632,165	+		CA265_RS23005	0.10	-2.3
5,632,172	+		CA265_RS23005	0.10	-3.2
5,632,173	-		CA265_RS23005	0.11	-3.2
5,632,263	+		CA265_RS23005	0.17	-2.6
5,632,315	+		CA265_RS23005	0.21	-2.0
5,632,413	+		CA265_RS23005	0.28	-2.4
5,632,443	-		CA265_RS23005	0.30	-3.0
5,632,474	+		CA265_RS23005	0.32	-2.2
5,632,607	-		CA265_RS23005	0.42	-0.8
5,632,607	-		CA265_RS23005	0.42	-2.2
5,632,628	+		CA265_RS23005	0.43	-1.6
5,632,628	+		CA265_RS23005	0.43	-4.2
5,632,661	-		CA265_RS23005	0.45	+0.6
5,632,696	+		CA265_RS23005	0.48	-1.6
5,632,696	+		CA265_RS23005	0.48	-2.2
5,632,697	-		CA265_RS23005	0.48	-2.1
5,632,737	+		CA265_RS23005	0.51	-1.3
5,632,740	-		CA265_RS23005	0.51	-1.7
5,632,778	+		CA265_RS23005	0.54	-2.2
5,632,779	-		CA265_RS23005	0.54	-0.4