Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22630

Experiment: R2A with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22625 and CA265_RS22630 are separated by 71 nucleotidesCA265_RS22630 and CA265_RS22635 overlap by 1 nucleotides CA265_RS22625: CA265_RS22625 - arginase, at 5,540,018 to 5,541,199 _RS22625 CA265_RS22630: CA265_RS22630 - nucleoside-diphosphate sugar epimerase, at 5,541,271 to 5,542,233 _RS22630 CA265_RS22635: CA265_RS22635 - phosphoserine phosphatase (EC 3.1.3.3) (from data), at 5,542,233 to 5,543,534 _RS22635 Position (kb) 5541 5542 5543Strain fitness (log2 ratio) -3 -2 -1 0 1at 5540.379 kb on - strand, within CA265_RS22625at 5541.071 kb on - strand, within CA265_RS22625at 5541.314 kb on + strandat 5541.497 kb on + strand, within CA265_RS22630at 5541.542 kb on + strand, within CA265_RS22630at 5541.542 kb on + strand, within CA265_RS22630at 5541.830 kb on + strand, within CA265_RS22630at 5541.831 kb on - strand, within CA265_RS22630at 5541.852 kb on + strand, within CA265_RS22630at 5542.130 kb on + strand, within CA265_RS22630at 5542.137 kb on - strandat 5542.144 kb on + strandat 5542.155 kb on + strandat 5542.231 kb on + strandat 5542.232 kb on - strandat 5542.370 kb on + strand, within CA265_RS22635at 5542.546 kb on + strand, within CA265_RS22635at 5542.616 kb on + strand, within CA265_RS22635at 5542.724 kb on - strand, within CA265_RS22635at 5543.079 kb on - strand, within CA265_RS22635at 5543.128 kb on + strand, within CA265_RS22635

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml
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5,540,379 - CA265_RS22625 0.31 +0.6
5,541,071 - CA265_RS22625 0.89 +0.3
5,541,314 + +0.3
5,541,497 + CA265_RS22630 0.23 -1.4
5,541,542 + CA265_RS22630 0.28 -0.3
5,541,542 + CA265_RS22630 0.28 -3.0
5,541,830 + CA265_RS22630 0.58 -0.9
5,541,831 - CA265_RS22630 0.58 +0.6
5,541,852 + CA265_RS22630 0.60 -2.7
5,542,130 + CA265_RS22630 0.89 -0.7
5,542,137 - -1.8
5,542,144 + -0.9
5,542,155 + -0.5
5,542,231 + +0.9
5,542,232 - -0.4
5,542,370 + CA265_RS22635 0.11 +0.0
5,542,546 + CA265_RS22635 0.24 -2.2
5,542,616 + CA265_RS22635 0.29 -0.7
5,542,724 - CA265_RS22635 0.38 +0.4
5,543,079 - CA265_RS22635 0.65 +1.1
5,543,128 + CA265_RS22635 0.69 -0.4

Or see this region's nucleotide sequence