Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18590

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
4,620,994	-		CA265_RS18585	0.61	+0.4
4,621,032	+		CA265_RS18585	0.63	+0.1
4,621,052	-		CA265_RS18585	0.64	+0.6
4,621,052	-		CA265_RS18585	0.64	+0.2
4,621,069	-		CA265_RS18585	0.64	-0.4
4,621,072	+		CA265_RS18585	0.64	-0.5
4,621,073	-		CA265_RS18585	0.64	-0.5
4,621,115	+		CA265_RS18585	0.66	+0.8
4,621,139	+		CA265_RS18585	0.67	+0.3
4,621,198	+		CA265_RS18585	0.70	+0.2
4,621,199	-		CA265_RS18585	0.70	-0.3
4,621,199	-		CA265_RS18585	0.70	+0.1
4,621,236	-		CA265_RS18585	0.71	-0.7
4,621,259	+		CA265_RS18585	0.72	+0.0
4,621,260	-		CA265_RS18585	0.72	+0.5
4,621,266	-		CA265_RS18585	0.72	+0.4
4,621,299	+		CA265_RS18585	0.74	+0.2
4,621,306	-		CA265_RS18585	0.74	-0.6
4,621,411	+		CA265_RS18585	0.78	-0.2
4,621,411	+		CA265_RS18585	0.78	-1.1
4,621,412	-		CA265_RS18585	0.78	-0.6
4,621,412	-		CA265_RS18585	0.78	+0.2
4,621,414	+		CA265_RS18585	0.79	+2.1
4,621,415	-		CA265_RS18585	0.79	-1.0
4,621,415	-		CA265_RS18585	0.79	+0.0
4,621,419	+		CA265_RS18585	0.79	-1.2
4,621,444	+		CA265_RS18585	0.80	-0.7
4,621,488	+		CA265_RS18585	0.82	-0.1
4,621,567	+		CA265_RS18585	0.85	-0.9
4,621,605	-		CA265_RS18585	0.86	-0.0
4,621,652	+		CA265_RS18585	0.88	+0.0
4,621,653	-		CA265_RS18585	0.88	-0.5
4,621,717	+				+0.1
4,621,717	+				-0.0
4,621,743	+				-0.5
4,621,744	-				+0.0
4,621,748	+				-0.5
4,621,764	+				+0.2
4,621,780	-				-0.3
4,621,804	+				-1.4
4,621,838	+				-1.2
4,621,899	-				+0.3
4,621,899	-				+0.1
4,621,987	+				-0.4
4,621,996	+				+0.7
4,621,996	+				+0.0
4,622,015	-				-0.6
4,622,015	-				+0.2
4,622,044	+				+0.1
4,622,044	+				-0.8
4,622,066	+				+0.2
4,622,143	+				-1.1
4,622,143	+				-0.4
4,622,145	+				-0.0
4,622,152	+				+0.2
4,622,153	-				+0.8
4,622,226	-		CA265_RS18590	0.11	+0.3
4,622,297	+		CA265_RS18590	0.14	-1.9
4,622,302	+		CA265_RS18590	0.14	-0.8
4,622,329	+		CA265_RS18590	0.15	-0.5
4,622,335	+		CA265_RS18590	0.15	-2.0
4,622,336	-		CA265_RS18590	0.15	+0.0
4,622,398	+		CA265_RS18590	0.18	-2.0
4,622,462	-		CA265_RS18590	0.21	-0.4
4,622,462	-		CA265_RS18590	0.21	+0.2
4,622,496	-		CA265_RS18590	0.22	-2.2
4,622,500	-		CA265_RS18590	0.22	-0.1
4,622,500	-		CA265_RS18590	0.22	-0.5
4,622,671	-		CA265_RS18590	0.29	+0.8
4,622,671	-		CA265_RS18590	0.29	-0.0
4,622,671	-		CA265_RS18590	0.29	+0.4
4,622,671	-		CA265_RS18590	0.29	+0.1
4,622,671	-		CA265_RS18590	0.29	-0.4
4,622,724	-		CA265_RS18590	0.32	-0.2
4,622,751	-		CA265_RS18590	0.33	-0.1
4,622,882	-		CA265_RS18590	0.38	-0.8
4,622,924	+		CA265_RS18590	0.40	-0.3
4,622,925	-		CA265_RS18590	0.40	-1.4
4,622,961	+		CA265_RS18590	0.41	-0.1
4,622,996	-		CA265_RS18590	0.43	+0.1
4,623,070	+		CA265_RS18590	0.46	-0.0
4,623,071	-		CA265_RS18590	0.46	-0.4
4,623,127	-		CA265_RS18590	0.48	+0.9
4,623,163	+		CA265_RS18590	0.50	-1.0
4,623,163	+		CA265_RS18590	0.50	+1.4
4,623,182	+		CA265_RS18590	0.50	-0.2
4,623,226	+		CA265_RS18590	0.52	-0.6
4,623,236	-		CA265_RS18590	0.53	+0.3
4,623,312	+		CA265_RS18590	0.56	-0.4
4,623,384	+		CA265_RS18590	0.59	-0.9
4,623,384	+		CA265_RS18590	0.59	+0.7
4,623,434	-		CA265_RS18590	0.61	+0.6
4,623,521	+		CA265_RS18590	0.64	+0.1
4,623,522	-		CA265_RS18590	0.65	+0.2
4,623,555	+		CA265_RS18590	0.66	-1.0
4,623,605	-		CA265_RS18590	0.68	-0.3
4,623,800	+		CA265_RS18590	0.76	-2.0
4,623,801	-		CA265_RS18590	0.76	+0.4
4,623,868	+		CA265_RS18590	0.79	+1.1
4,623,868	+		CA265_RS18590	0.79	-0.4
4,623,893	+		CA265_RS18590	0.80	-0.1
4,623,938	-		CA265_RS18590	0.82	+0.2
4,623,938	-		CA265_RS18590	0.82	+0.4
4,623,948	+		CA265_RS18590	0.82	-0.7
4,623,955	-		CA265_RS18590	0.82	-0.6
4,623,957	-		CA265_RS18590	0.83	+0.0
4,623,957	-		CA265_RS18590	0.83	+0.3
4,624,055	-		CA265_RS18590	0.87	-1.1
4,624,060	-		CA265_RS18590	0.87	+0.8
4,624,067	-		CA265_RS18590	0.87	+0.4
4,624,067	-		CA265_RS18590	0.87	+0.4
4,624,110	-		CA265_RS18590	0.89	+0.6
4,624,113	+		CA265_RS18590	0.89	+1.0
4,624,113	+		CA265_RS18590	0.89	+0.0
4,624,114	-		CA265_RS18590	0.89	-0.2
4,624,114	-		CA265_RS18590	0.89	+1.0
4,624,140	+				+1.3
4,624,140	+				-0.6
4,624,140	+				-0.7
4,624,140	+				-0.1
4,624,141	-				+0.1
4,624,211	+				-0.1
4,624,275	+				+0.4
4,624,275	+				+0.1
4,624,321	-				+0.2
4,624,358	-				-0.3
4,624,364	-				+0.2
4,624,466	-				-0.3
4,624,517	-		CA265_RS18595	0.10	-0.9
4,624,522	+		CA265_RS18595	0.11	-0.4
4,624,673	+		CA265_RS18595	0.32	-0.8
4,624,673	+		CA265_RS18595	0.32	-0.8
4,624,674	-		CA265_RS18595	0.32	-0.3
4,624,743	+		CA265_RS18595	0.42	+0.5
4,624,800	+		CA265_RS18595	0.50	-1.2
4,624,803	+		CA265_RS18595	0.50	-0.4
4,624,841	-		CA265_RS18595	0.56	-0.2
4,624,871	-		CA265_RS18595	0.60	+0.0
4,624,932	+		CA265_RS18595	0.68	+0.6
4,624,932	+		CA265_RS18595	0.68	-1.1
4,624,932	+		CA265_RS18595	0.68	-0.2
4,625,109	+				-0.6
4,625,137	-				+0.3
4,625,137	-				+0.2
4,625,137	-				+0.3
4,625,139	-				-2.3
4,625,155	-				-0.3
4,625,204	+				-0.5
4,625,217	+				+1.6
4,625,218	-				-0.5
4,625,223	+				-1.0
4,625,337	-				+0.3
4,625,343	-				-0.2
4,625,352	-				+0.4
4,625,372	-		CA265_RS18600	0.11	+0.5