Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16605

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
4,171,852	+				+0.1
4,171,855	-				+0.2
4,171,855	-				-0.1
4,171,865	+				+1.1
4,171,874	+				-0.4
4,171,907	-				-0.5
4,171,907	-				+1.2
4,171,910	-				-0.3
4,171,940	-		CA265_RS16600	0.11	-0.1
4,171,940	-		CA265_RS16600	0.11	+0.5
4,171,987	+		CA265_RS16600	0.17	+2.0
4,172,103	+		CA265_RS16600	0.33	-0.7
4,172,104	-		CA265_RS16600	0.34	+0.7
4,172,104	-		CA265_RS16600	0.34	+0.2
4,172,148	+		CA265_RS16600	0.40	-0.4
4,172,157	-		CA265_RS16600	0.41	-0.6
4,172,191	+		CA265_RS16600	0.46	+0.3
4,172,191	+		CA265_RS16600	0.46	-0.2
4,172,192	-		CA265_RS16600	0.46	+1.2
4,172,271	-		CA265_RS16600	0.57	-1.2
4,172,283	-		CA265_RS16600	0.58	+0.4
4,172,288	+		CA265_RS16600	0.59	+0.7
4,172,346	-		CA265_RS16600	0.67	+0.3
4,172,386	+		CA265_RS16600	0.72	+0.9
4,172,401	+		CA265_RS16600	0.75	+0.3
4,172,480	-		CA265_RS16600	0.85	-0.5
4,172,507	+		CA265_RS16600	0.89	+2.3
4,172,584	-				-0.2
4,172,591	+				-1.5
4,172,624	+				+1.2
4,172,628	+				-1.0
4,172,661	+				-1.6
4,172,662	-				+0.4
4,172,807	+				-1.0
4,172,832	-				+0.4
4,172,832	-				-0.6
4,172,832	-				-0.5
4,172,832	-				-0.6
4,172,835	+				-1.4
4,172,894	+				-0.3
4,172,935	+				-0.9
4,172,936	-				+0.0
4,172,940	-				-0.1
4,172,987	-		CA265_RS16605	0.13	+0.1
4,172,987	-		CA265_RS16605	0.13	-0.5
4,173,022	+		CA265_RS16605	0.15	-0.8
4,173,023	-		CA265_RS16605	0.15	-1.2
4,173,034	+		CA265_RS16605	0.15	+0.4
4,173,087	-		CA265_RS16605	0.19	-0.1
4,173,087	-		CA265_RS16605	0.19	-1.2
4,173,133	-		CA265_RS16605	0.22	-1.8
4,173,234	-		CA265_RS16605	0.28	-1.6
4,173,243	+		CA265_RS16605	0.28	-2.1
4,173,243	+		CA265_RS16605	0.28	-1.0
4,173,243	+		CA265_RS16605	0.28	-0.8
4,173,244	-		CA265_RS16605	0.28	-0.6
4,173,255	-		CA265_RS16605	0.29	-0.7
4,173,255	-		CA265_RS16605	0.29	-0.2
4,173,285	-		CA265_RS16605	0.31	+0.6
4,173,332	-		CA265_RS16605	0.34	-0.3
4,173,341	-		CA265_RS16605	0.34	+0.6
4,173,407	-		CA265_RS16605	0.38	-0.2
4,173,407	-		CA265_RS16605	0.38	+0.1
4,173,438	+		CA265_RS16605	0.40	-0.4
4,173,493	+		CA265_RS16605	0.44	-1.3
4,173,497	+		CA265_RS16605	0.44	-1.1
4,173,497	+		CA265_RS16605	0.44	-1.8
4,173,498	-		CA265_RS16605	0.44	-2.1
4,173,572	+		CA265_RS16605	0.48	-1.1
4,173,629	+		CA265_RS16605	0.52	+0.8
4,173,629	+		CA265_RS16605	0.52	-0.6
4,173,629	+		CA265_RS16605	0.52	-0.3
4,173,642	+		CA265_RS16605	0.53	-0.8
4,173,652	+		CA265_RS16605	0.53	-2.6
4,173,652	+		CA265_RS16605	0.53	-1.4
4,173,652	+		CA265_RS16605	0.53	-2.1
4,173,653	-		CA265_RS16605	0.53	-0.4
4,173,653	-		CA265_RS16605	0.53	-0.9
4,173,784	-		CA265_RS16605	0.61	-0.3
4,173,784	-		CA265_RS16605	0.61	-1.1
4,173,889	+		CA265_RS16605	0.68	+1.0
4,173,925	-		CA265_RS16605	0.70	-0.2
4,174,010	+		CA265_RS16605	0.75	-0.6
4,174,038	+		CA265_RS16605	0.77	-1.5
4,174,084	-		CA265_RS16605	0.80	-0.2
4,174,088	-		CA265_RS16605	0.80	+0.5
4,174,088	-		CA265_RS16605	0.80	+0.1
4,174,088	-		CA265_RS16605	0.80	-0.8
4,174,144	-		CA265_RS16605	0.83	-0.6
4,174,161	-		CA265_RS16605	0.84	-1.0
4,174,180	-		CA265_RS16605	0.86	-1.4
4,174,231	-		CA265_RS16605	0.89	-1.0
4,174,241	+		CA265_RS16605	0.89	+0.7
4,174,259	-				-0.7
4,174,259	-				+0.5
4,174,414	-				-0.4
4,174,417	-				+0.4
4,174,425	-				-0.3
4,174,425	-				+0.3
4,174,458	+				-0.9
4,174,505	+				-0.4
4,174,522	+				+0.5
4,174,528	+				-0.6
4,174,622	-				-0.8
4,174,626	+				+0.7
4,174,626	+				+0.9
4,174,630	+				-0.1
4,174,638	-				+0.4
4,174,638	-				-0.8
4,174,702	+		CA265_RS16610	0.10	+0.5
4,174,705	-		CA265_RS16610	0.11	-0.2
4,174,765	+		CA265_RS16610	0.15	-0.1
4,174,765	+		CA265_RS16610	0.15	+1.1
4,174,800	-		CA265_RS16610	0.17	-1.0
4,174,862	+		CA265_RS16610	0.21	+0.1
4,174,904	-		CA265_RS16610	0.24	-0.3
4,174,966	+		CA265_RS16610	0.28	+0.3
4,174,975	-		CA265_RS16610	0.29	-1.1
4,175,129	+		CA265_RS16610	0.39	+0.2
4,175,205	+				-0.1
4,175,206	-		CA265_RS16610	0.44	+0.3
4,175,228	+		CA265_RS16610	0.45	-0.5
4,175,229	-		CA265_RS16610	0.45	+0.4
4,175,230	+		CA265_RS16610	0.45	-0.6
4,175,230	+		CA265_RS16610	0.45	-0.6
4,175,340	-		CA265_RS16610	0.53	-0.6
4,175,340	-		CA265_RS16610	0.53	+0.0
4,175,342	+		CA265_RS16610	0.53	-0.1
4,175,364	+		CA265_RS16610	0.54	+0.9
4,175,365	-		CA265_RS16610	0.54	+0.1
4,175,396	-		CA265_RS16610	0.56	-2.1