Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15380

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
3,869,454	+		CA265_RS15375	0.19	+0.1
3,869,460	+		CA265_RS15375	0.19	-0.1
3,869,461	-		CA265_RS15375	0.19	+0.1
3,869,534	+		CA265_RS15375	0.25	+0.2
3,869,534	+		CA265_RS15375	0.25	-1.0
3,869,535	-		CA265_RS15375	0.25	+0.1
3,869,536	+		CA265_RS15375	0.26	+0.8
3,869,537	-		CA265_RS15375	0.26	-0.7
3,869,546	+		CA265_RS15375	0.26	+1.2
3,869,547	-		CA265_RS15375	0.26	-0.6
3,869,568	+		CA265_RS15375	0.28	+1.0
3,869,651	-		CA265_RS15375	0.35	+0.9
3,869,665	-		CA265_RS15375	0.36	-1.3
3,869,707	+		CA265_RS15375	0.40	+0.3
3,869,764	-		CA265_RS15375	0.44	-0.5
3,869,855	+		CA265_RS15375	0.52	+0.0
3,869,856	-		CA265_RS15375	0.52	+0.1
3,869,871	+		CA265_RS15375	0.53	+1.3
3,869,871	+		CA265_RS15375	0.53	-0.6
3,869,884	+		CA265_RS15375	0.54	+1.0
3,869,906	+		CA265_RS15375	0.56	+1.3
3,869,907	-		CA265_RS15375	0.56	+0.2
3,869,907	-		CA265_RS15375	0.56	+0.1
3,869,995	-		CA265_RS15375	0.63	-0.3
3,869,999	-		CA265_RS15375	0.64	+0.2
3,869,999	-		CA265_RS15375	0.64	-0.3
3,870,004	-		CA265_RS15375	0.64	+0.1
3,870,058	+		CA265_RS15375	0.68	-0.3
3,870,059	-		CA265_RS15375	0.68	-0.2
3,870,073	-		CA265_RS15375	0.70	-0.5
3,870,175	+		CA265_RS15375	0.78	+0.0
3,870,188	+		CA265_RS15375	0.79	-0.7
3,870,242	-		CA265_RS15375	0.83	+0.1
3,870,255	-		CA265_RS15375	0.85	-1.4
3,870,255	-		CA265_RS15375	0.85	+0.5
3,870,266	-		CA265_RS15375	0.85	+0.4
3,870,293	-		CA265_RS15375	0.88	-0.2
3,870,297	+		CA265_RS15375	0.88	+0.6
3,870,308	+		CA265_RS15375	0.89	-0.2
3,870,308	+		CA265_RS15375	0.89	+0.6
3,870,309	-		CA265_RS15375	0.89	-0.1
3,870,309	-				+0.5
3,870,309	-		CA265_RS15375	0.89	-0.0
3,870,316	-		CA265_RS15375	0.90	+0.2
3,870,328	+				-0.4
3,870,361	+				-1.7
3,870,361	+				-0.4
3,870,362	-				-0.4
3,870,364	-				-0.8
3,870,413	-				-0.4
3,870,440	+				+0.4
3,870,441	-				-0.0
3,870,444	+				+0.2
3,870,444	+				-0.5
3,870,445	-				-0.1
3,870,445	-				+0.2
3,870,534	-		CA265_RS15380	0.10	-0.4
3,870,544	-		CA265_RS15380	0.11	-0.9
3,870,586	-		CA265_RS15380	0.16	+0.2
3,870,586	-		CA265_RS15380	0.16	+0.0
3,870,621	-		CA265_RS15380	0.20	+0.5
3,870,626	+		CA265_RS15380	0.20	-0.9
3,870,736	-		CA265_RS15380	0.33	+0.0
3,870,806	-		CA265_RS15380	0.41	+0.1
3,870,959	+		CA265_RS15380	0.58	+1.4
3,870,959	+		CA265_RS15380	0.58	-2.1
3,870,960	-		CA265_RS15380	0.58	-0.0
3,871,004	-		CA265_RS15380	0.63	+0.4
3,871,073	+		CA265_RS15380	0.70	+0.9
3,871,076	-		CA265_RS15380	0.71	+0.5
3,871,084	+		CA265_RS15380	0.72	+0.4
3,871,142	-		CA265_RS15380	0.78	+0.5
3,871,142	-		CA265_RS15380	0.78	-0.4
3,871,188	-		CA265_RS15380	0.83	+0.0
3,871,205	+		CA265_RS15380	0.85	+0.3
3,871,205	+		CA265_RS15380	0.85	-0.1
3,871,206	-		CA265_RS15380	0.85	+0.2
3,871,249	-				+0.2
3,871,305	-				-0.2
3,871,348	-				+0.4
3,871,348	-				-0.8
3,871,348	-				+0.8
3,871,348	-				-0.1
3,871,348	-				-0.6
3,871,348	-				+0.1
3,871,353	-				-0.3
3,871,374	-				-0.3
3,871,463	-		CA265_RS15385	0.13	-0.3
3,871,514	+		CA265_RS15385	0.19	-0.5
3,871,518	+		CA265_RS15385	0.19	+0.6
3,871,581	-		CA265_RS15385	0.27	-0.8
3,871,622	+		CA265_RS15385	0.31	+1.0
3,871,658	-		CA265_RS15385	0.35	+0.3
3,871,685	+		CA265_RS15385	0.38	-0.7
3,871,730	+		CA265_RS15385	0.44	+1.0
3,871,745	+		CA265_RS15385	0.45	-0.5
3,871,950	-		CA265_RS15385	0.69	+1.3
3,871,962	-		CA265_RS15385	0.70	-0.2
3,872,028	+		CA265_RS15385	0.78	+0.1
3,872,040	+		CA265_RS15385	0.79	-0.2
3,872,069	+		CA265_RS15385	0.82	-0.5
3,872,083	-		CA265_RS15385	0.84	-0.3
3,872,203	-				+0.5
3,872,206	-				-0.1
3,872,328	+		CA265_RS15390	0.11	+0.4