Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12525

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
3,130,242	+		CA265_RS12520	0.53	-0.2
3,130,257	+		CA265_RS12520	0.53	+0.1
3,130,286	-		CA265_RS12520	0.55	-0.5
3,130,287	+		CA265_RS12520	0.55	+0.4
3,130,317	+		CA265_RS12520	0.57	-0.2
3,130,318	-		CA265_RS12520	0.57	-0.5
3,130,349	+		CA265_RS12520	0.58	+0.3
3,130,350	-		CA265_RS12520	0.58	+0.4
3,130,494	-		CA265_RS12520	0.65	-2.2
3,130,497	+		CA265_RS12520	0.66	+0.9
3,130,498	-		CA265_RS12520	0.66	-0.2
3,130,520	-		CA265_RS12520	0.67	+0.4
3,130,564	+		CA265_RS12520	0.69	+0.1
3,130,572	-		CA265_RS12520	0.69	-0.1
3,130,607	-		CA265_RS12520	0.71	-0.9
3,130,647	+		CA265_RS12520	0.73	+0.3
3,130,673	+		CA265_RS12520	0.75	-0.1
3,130,676	+		CA265_RS12520	0.75	+0.1
3,130,847	+		CA265_RS12520	0.83	+0.3
3,130,882	-		CA265_RS12520	0.85	-0.3
3,130,940	+		CA265_RS12520	0.88	-0.3
3,130,941	-		CA265_RS12520	0.88	-0.7
3,130,977	+				-0.4
3,130,999	-				-0.7
3,131,009	+				-0.1
3,131,081	-				-0.0
3,131,081	-				+0.1
3,131,166	+				-0.3
3,131,172	+				-0.6
3,131,172	+				+0.5
3,131,173	-				+0.4
3,131,232	-				+0.4
3,131,258	+				-0.0
3,131,258	+				-0.9
3,131,283	-				-0.7
3,131,309	+				-1.5
3,131,402	+				+0.0
3,131,468	-		CA265_RS12525	0.10	-0.3
3,131,495	+		CA265_RS12525	0.11	-0.1
3,131,498	+		CA265_RS12525	0.11	-0.4
3,131,499	-		CA265_RS12525	0.11	-0.3
3,131,499	-		CA265_RS12525	0.11	+0.3
3,131,510	-		CA265_RS12525	0.11	-0.5
3,131,511	+		CA265_RS12525	0.12	+0.1
3,131,511	+		CA265_RS12525	0.12	-0.2
3,131,511	+		CA265_RS12525	0.12	-0.3
3,131,608	+		CA265_RS12525	0.14	-1.2
3,131,623	+		CA265_RS12525	0.15	+0.6
3,131,676	-		CA265_RS12525	0.16	-0.2
3,131,687	+		CA265_RS12525	0.17	+0.6
3,131,688	-		CA265_RS12525	0.17	-0.3
3,131,740	+		CA265_RS12525	0.18	-0.1
3,131,745	+		CA265_RS12525	0.18	-0.0
3,131,745	+		CA265_RS12525	0.18	-2.5
3,131,745	+		CA265_RS12525	0.18	+0.6
3,131,745	+		CA265_RS12525	0.18	+0.6
3,131,820	-		CA265_RS12525	0.21	-0.0
3,131,863	+		CA265_RS12525	0.22	-0.2
3,131,863	+		CA265_RS12525	0.22	-0.0
3,131,877	-		CA265_RS12525	0.22	-1.5
3,131,884	+		CA265_RS12525	0.22	-0.3
3,131,885	-		CA265_RS12525	0.23	-0.2
3,131,907	-		CA265_RS12525	0.23	+0.1
3,131,912	-		CA265_RS12525	0.23	+0.4
3,131,913	+		CA265_RS12525	0.23	-0.4
3,131,958	-		CA265_RS12525	0.25	-0.1
3,132,055	+		CA265_RS12525	0.28	-0.9
3,132,067	-		CA265_RS12525	0.28	-0.5
3,132,089	+		CA265_RS12525	0.29	+1.0
3,132,113	-		CA265_RS12525	0.29	+0.0
3,132,154	-		CA265_RS12525	0.30	+0.5
3,132,161	-		CA265_RS12525	0.31	+0.7
3,132,202	+		CA265_RS12525	0.32	-0.3
3,132,211	+		CA265_RS12525	0.32	+0.1
3,132,216	+		CA265_RS12525	0.32	-0.6
3,132,216	+		CA265_RS12525	0.32	-1.2
3,132,420	-		CA265_RS12525	0.38	+0.5
3,132,495	+		CA265_RS12525	0.40	+0.5
3,132,496	-		CA265_RS12525	0.40	-0.3
3,132,530	+		CA265_RS12525	0.41	+0.9
3,132,530	+		CA265_RS12525	0.41	-0.3
3,132,535	+		CA265_RS12525	0.42	+2.1
3,132,539	-		CA265_RS12525	0.42	-0.3
3,132,539	-		CA265_RS12525	0.42	+0.0
3,132,554	-		CA265_RS12525	0.42	+0.0
3,132,599	+		CA265_RS12525	0.44	+0.0
3,132,601	+		CA265_RS12525	0.44	-0.0
3,132,602	-		CA265_RS12525	0.44	-0.5
3,132,615	-		CA265_RS12525	0.44	+0.1
3,132,704	-		CA265_RS12525	0.47	-0.6
3,132,706	-		CA265_RS12525	0.47	-1.4
3,132,706	-		CA265_RS12525	0.47	-0.0
3,132,714	+		CA265_RS12525	0.47	+0.2
3,132,715	-		CA265_RS12525	0.47	-0.8
3,132,727	+		CA265_RS12525	0.47	-0.0
3,132,734	-		CA265_RS12525	0.47	+0.3
3,132,819	+		CA265_RS12525	0.50	+0.9
3,132,845	-		CA265_RS12525	0.51	+0.0
3,132,853	+		CA265_RS12525	0.51	+0.4
3,132,854	-		CA265_RS12525	0.51	-1.1
3,132,856	-		CA265_RS12525	0.51	-0.2
3,132,856	-		CA265_RS12525	0.51	-0.1
3,132,867	-		CA265_RS12525	0.51	+0.1
3,132,903	+		CA265_RS12525	0.52	+0.7
3,132,908	+		CA265_RS12525	0.53	+0.7
3,132,909	-		CA265_RS12525	0.53	+0.5
3,132,914	+		CA265_RS12525	0.53	+0.5
3,132,950	-		CA265_RS12525	0.54	-0.5
3,132,950	-		CA265_RS12525	0.54	+0.1
3,132,952	-		CA265_RS12525	0.54	-0.4
3,133,000	+		CA265_RS12525	0.55	+0.1
3,133,001	-		CA265_RS12525	0.55	+0.3
3,133,007	+		CA265_RS12525	0.56	-0.3
3,133,023	+		CA265_RS12525	0.56	+0.1
3,133,054	+		CA265_RS12525	0.57	-0.6
3,133,060	+		CA265_RS12525	0.57	+0.2
3,133,060	+		CA265_RS12525	0.57	-0.1
3,133,062	+		CA265_RS12525	0.57	-0.3
3,133,078	+		CA265_RS12525	0.58	-0.3
3,133,079	-		CA265_RS12525	0.58	-0.1
3,133,173	+		CA265_RS12525	0.60	-0.1
3,133,173	+		CA265_RS12525	0.60	+0.7
3,133,177	+		CA265_RS12525	0.61	+0.2
3,133,191	+		CA265_RS12525	0.61	+0.6
3,133,248	+		CA265_RS12525	0.63	+0.7
3,133,275	-		CA265_RS12525	0.63	+0.4
3,133,277	-		CA265_RS12525	0.63	+0.4
3,133,280	+		CA265_RS12525	0.64	-0.3
3,133,337	-		CA265_RS12525	0.65	-0.1
3,133,397	-		CA265_RS12525	0.67	-1.1
3,133,398	+		CA265_RS12525	0.67	-0.2
3,133,398	+		CA265_RS12525	0.67	-0.3
3,133,399	-		CA265_RS12525	0.67	-0.8
3,133,422	+		CA265_RS12525	0.68	+0.1
3,133,423	-		CA265_RS12525	0.68	-0.3
3,133,430	-		CA265_RS12525	0.68	-1.1
3,133,432	+		CA265_RS12525	0.68	+0.9
3,133,481	-		CA265_RS12525	0.69	+1.1
3,133,513	+		CA265_RS12525	0.70	-0.3
3,133,513	+		CA265_RS12525	0.70	+0.3
3,133,516	+		CA265_RS12525	0.70	-0.5
3,133,558	+		CA265_RS12525	0.72	+1.5
3,133,586	+		CA265_RS12525	0.73	+0.2
3,133,587	-		CA265_RS12525	0.73	-1.3
3,133,621	-		CA265_RS12525	0.74	-0.1
3,133,645	+		CA265_RS12525	0.74	+1.4
3,133,750	+		CA265_RS12525	0.77	-0.0
3,133,750	+		CA265_RS12525	0.77	+0.1
3,133,751	-		CA265_RS12525	0.77	+0.5
3,133,784	+		CA265_RS12525	0.78	-0.3
3,133,805	+		CA265_RS12525	0.79	+0.6
3,133,806	-		CA265_RS12525	0.79	-0.3
3,133,806	-		CA265_RS12525	0.79	+0.2
3,133,813	+		CA265_RS12525	0.79	-0.4
3,133,813	+		CA265_RS12525	0.79	+0.5
3,133,814	-		CA265_RS12525	0.79	-0.2
3,133,814	-		CA265_RS12525	0.79	-0.4
3,133,814	-		CA265_RS12525	0.79	+0.9
3,133,814	-		CA265_RS12525	0.79	-0.4
3,133,821	-		CA265_RS12525	0.79	-0.4
3,133,836	-		CA265_RS12525	0.80	+0.8
3,133,840	+		CA265_RS12525	0.80	+0.2
3,133,876	+		CA265_RS12525	0.81	+0.2
3,133,877	-		CA265_RS12525	0.81	-0.2
3,133,877	-		CA265_RS12525	0.81	-0.4
3,133,881	+		CA265_RS12525	0.81	-0.3
3,133,970	+		CA265_RS12525	0.84	+0.3
3,133,972	+		CA265_RS12525	0.84	-1.4
3,133,973	-		CA265_RS12525	0.84	-0.6
3,133,973	-		CA265_RS12525	0.84	+0.6
3,133,973	-		CA265_RS12525	0.84	-0.5
3,133,973	-		CA265_RS12525	0.84	-0.1
3,133,998	-		CA265_RS12525	0.85	-0.5
3,134,023	+		CA265_RS12525	0.85	+0.4
3,134,048	+		CA265_RS12525	0.86	+0.8
3,134,048	+		CA265_RS12525	0.86	-0.2
3,134,083	+		CA265_RS12525	0.87	-0.8
3,134,083	+		CA265_RS12525	0.87	+0.1
3,134,084	-		CA265_RS12525	0.87	-1.3
3,134,116	+		CA265_RS12525	0.88	+0.9
3,134,134	+		CA265_RS12525	0.89	-0.3
3,134,231	+				-0.4
3,134,261	-				-0.1
3,134,261	-				+0.5
3,134,276	-				+0.2
3,134,435	-				-0.4
3,134,564	-				-0.2
3,134,654	+				-0.1
3,134,685	+				-0.9
3,134,743	+				+0.3
3,134,754	+				-0.4
3,134,755	-				-0.3
3,134,815	+		CA265_RS12530	0.14	+0.5
3,134,816	-		CA265_RS12530	0.14	-0.6
3,134,817	+		CA265_RS12530	0.14	+0.0
3,134,886	+		CA265_RS12530	0.20	+0.3
3,134,886	+		CA265_RS12530	0.20	-0.6
3,134,886	+		CA265_RS12530	0.20	-1.4
3,134,886	+		CA265_RS12530	0.20	-0.5
3,134,889	+		CA265_RS12530	0.21	+0.4
3,135,079	+		CA265_RS12530	0.39	+0.1
3,135,100	+		CA265_RS12530	0.41	+0.6
3,135,138	+		CA265_RS12530	0.44	-0.4
3,135,184	-		CA265_RS12530	0.49	+0.4
3,135,192	-		CA265_RS12530	0.49	+0.1
3,135,217	+		CA265_RS12530	0.52	+0.7
3,135,247	-		CA265_RS12530	0.55	-0.5
3,135,308	+		CA265_RS12530	0.60	+0.8
3,135,308	+		CA265_RS12530	0.60	+0.0
3,135,331	+		CA265_RS12530	0.63	-0.3
3,135,377	+		CA265_RS12530	0.67	+0.9
3,135,385	+		CA265_RS12530	0.68	-0.0
3,135,386	-		CA265_RS12530	0.68	-0.1
3,135,386	-		CA265_RS12530	0.68	+0.4
3,135,462	-		CA265_RS12530	0.75	-1.1