Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11390

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
2,826,877	+		CA265_RS11385	0.44	+0.5
2,826,940	+		CA265_RS11385	0.48	-0.5
2,826,940	+		CA265_RS11385	0.48	+0.1
2,826,982	+		CA265_RS11385	0.50	+0.4
2,826,994	+		CA265_RS11385	0.51	+0.1
2,826,994	+		CA265_RS11385	0.51	-0.0
2,827,028	-		CA265_RS11385	0.53	-0.6
2,827,031	+		CA265_RS11385	0.53	+1.1
2,827,127	-		CA265_RS11385	0.59	-0.2
2,827,131	+		CA265_RS11385	0.59	-0.4
2,827,132	-		CA265_RS11385	0.59	+0.1
2,827,190	+		CA265_RS11385	0.63	-0.2
2,827,190	+		CA265_RS11385	0.63	-0.3
2,827,319	+		CA265_RS11385	0.70	-0.3
2,827,319	+		CA265_RS11385	0.70	+0.6
2,827,431	-		CA265_RS11385	0.77	-1.0
2,827,433	+		CA265_RS11385	0.77	+0.3
2,827,434	-		CA265_RS11385	0.77	+0.7
2,827,446	+		CA265_RS11385	0.78	+0.7
2,827,448	+		CA265_RS11385	0.78	+0.3
2,827,448	+		CA265_RS11385	0.78	+0.4
2,827,449	-		CA265_RS11385	0.78	-0.1
2,827,512	-		CA265_RS11385	0.82	+0.0
2,827,538	-		CA265_RS11385	0.84	-1.0
2,827,640	+		CA265_RS11385	0.90	-0.5
2,827,641	-		CA265_RS11385	0.90	-0.6
2,827,731	-				-0.0
2,827,731	-				-0.6
2,827,790	+				+0.4
2,827,791	-				-0.0
2,827,866	+				+0.3
2,827,869	+				+0.2
2,827,870	-				+0.1
2,827,870	-				-0.1
2,828,002	+				-0.9
2,828,031	-				+0.2
2,828,170	+		CA265_RS11390	0.11	+0.2
2,828,266	+		CA265_RS11390	0.14	-0.0
2,828,345	-		CA265_RS11390	0.17	+0.1
2,828,367	-		CA265_RS11390	0.18	-1.7
2,828,374	-		CA265_RS11390	0.18	-0.4
2,828,392	+		CA265_RS11390	0.19	-0.3
2,828,422	+		CA265_RS11390	0.20	-0.3
2,828,436	+		CA265_RS11390	0.20	-0.5
2,828,462	-		CA265_RS11390	0.21	+0.3
2,828,553	+		CA265_RS11390	0.24	-0.1
2,828,553	+		CA265_RS11390	0.24	-0.4
2,828,554	-		CA265_RS11390	0.24	-0.1
2,828,639	+				-0.5
2,828,653	+		CA265_RS11390	0.27	-0.6
2,828,654	-		CA265_RS11390	0.27	-0.0
2,828,656	-		CA265_RS11390	0.27	-0.3
2,828,711	+		CA265_RS11390	0.29	+1.1
2,828,712	-		CA265_RS11390	0.29	+0.1
2,828,719	+		CA265_RS11390	0.29	+0.1
2,828,774	-		CA265_RS11390	0.31	+1.3
2,828,901	-				+1.9
2,829,076	+		CA265_RS11390	0.41	-0.2
2,829,077	-		CA265_RS11390	0.41	-0.1
2,829,078	+		CA265_RS11390	0.41	-0.3
2,829,078	+		CA265_RS11390	0.41	+0.6
2,829,102	+		CA265_RS11390	0.42	-0.1
2,829,102	+		CA265_RS11390	0.42	-0.2
2,829,103	-		CA265_RS11390	0.42	-0.1
2,829,108	+		CA265_RS11390	0.42	+0.4
2,829,122	-		CA265_RS11390	0.42	-0.8
2,829,126	+		CA265_RS11390	0.42	-2.0
2,829,181	+		CA265_RS11390	0.44	+0.2
2,829,182	-		CA265_RS11390	0.44	-0.4
2,829,205	+		CA265_RS11390	0.45	-0.4
2,829,220	+		CA265_RS11390	0.45	+0.5
2,829,221	-		CA265_RS11390	0.45	+0.2
2,829,257	-		CA265_RS11390	0.47	+0.2
2,829,317	+		CA265_RS11390	0.49	+0.3
2,829,398	-		CA265_RS11390	0.51	-0.3
2,829,420	+		CA265_RS11390	0.52	+0.3
2,829,486	+		CA265_RS11390	0.54	-0.1
2,829,487	-		CA265_RS11390	0.54	-0.2
2,829,487	-		CA265_RS11390	0.54	-0.9
2,829,490	-		CA265_RS11390	0.54	-0.1
2,829,536	-		CA265_RS11390	0.56	-0.5
2,829,559	-		CA265_RS11390	0.56	-0.6
2,829,603	+		CA265_RS11390	0.58	-0.2
2,829,611	-		CA265_RS11390	0.58	-0.7
2,829,611	-		CA265_RS11390	0.58	+0.0
2,829,675	+		CA265_RS11390	0.60	-0.8
2,829,676	-		CA265_RS11390	0.60	-0.1
2,829,686	+		CA265_RS11390	0.61	+0.3
2,829,730	+		CA265_RS11390	0.62	+0.4
2,829,731	-		CA265_RS11390	0.62	-0.2
2,829,853	-		CA265_RS11390	0.66	+0.3
2,829,902	-		CA265_RS11390	0.68	+0.1
2,829,902	-		CA265_RS11390	0.68	-0.2
2,829,941	+		CA265_RS11390	0.69	+0.1
2,830,024	+		CA265_RS11390	0.71	-0.0
2,830,069	-		CA265_RS11390	0.73	-0.2
2,830,089	+		CA265_RS11390	0.74	+0.1
2,830,089	+		CA265_RS11390	0.74	+0.7
2,830,090	-		CA265_RS11390	0.74	+0.1
2,830,090	-		CA265_RS11390	0.74	+0.5
2,830,090	-		CA265_RS11390	0.74	+0.0
2,830,231	+		CA265_RS11390	0.78	+0.5
2,830,325	+		CA265_RS11390	0.81	-0.4
2,830,373	+		CA265_RS11390	0.83	-2.2
2,830,416	-		CA265_RS11390	0.84	-0.1
2,830,496	-		CA265_RS11390	0.87	-0.9
2,830,599	-				+0.2
2,830,647	+				+0.3
2,830,647	+				-0.0
2,830,658	+				+0.4
2,830,769	-				-1.3
2,830,776	-				-0.5
2,831,083	+				+0.7
2,831,084	-				-0.1
2,831,093	+				+0.2
2,831,093	+				-0.5
2,831,093	+				-0.2
2,831,094	-				+0.4
2,831,094	-				+0.1
2,831,094	-				-0.4
2,831,094	-				+0.9
2,831,173	-				-0.3
2,831,218	-				-0.0
2,831,247	-				-1.1
2,831,449	+		CA265_RS11395	0.21	-0.1
2,831,449	+		CA265_RS11395	0.21	-1.3
2,831,470	+		CA265_RS11395	0.23	-0.1
2,831,482	+		CA265_RS11395	0.24	-0.7
2,831,483	-		CA265_RS11395	0.24	-0.2
2,831,486	+				+0.5
2,831,530	-		CA265_RS11395	0.29	+0.2
2,831,559	+		CA265_RS11395	0.32	-2.3
2,831,600	-		CA265_RS11395	0.36	+0.3
2,831,656	+		CA265_RS11395	0.41	+0.0
2,831,676	+		CA265_RS11395	0.43	+0.4
2,831,677	-		CA265_RS11395	0.43	+0.1
2,831,702	+		CA265_RS11395	0.46	+0.3
2,831,724	-		CA265_RS11395	0.48	+0.6
2,831,739	-		CA265_RS11395	0.49	-0.8
2,831,747	+		CA265_RS11395	0.50	+0.2
2,831,784	-		CA265_RS11395	0.54	-0.7
2,831,844	-		CA265_RS11395	0.60	-0.1