Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10300

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
2,542,221	-		CA265_RS10295	0.51	+0.1
2,542,221	-		CA265_RS10295	0.51	+0.4
2,542,285	-		CA265_RS10295	0.55	-0.0
2,542,285	-		CA265_RS10295	0.55	+0.0
2,542,292	-		CA265_RS10295	0.55	-0.1
2,542,365	+		CA265_RS10295	0.59	-0.2
2,542,365	+		CA265_RS10295	0.59	-0.0
2,542,365	+		CA265_RS10295	0.59	+0.3
2,542,396	+		CA265_RS10295	0.60	-0.9
2,542,455	-		CA265_RS10295	0.64	-0.2
2,542,457	+		CA265_RS10295	0.64	-1.0
2,542,547	-		CA265_RS10295	0.68	+0.2
2,542,570	+		CA265_RS10295	0.70	-0.2
2,542,573	-		CA265_RS10295	0.70	-0.3
2,542,611	-		CA265_RS10295	0.72	+0.8
2,542,649	-		CA265_RS10295	0.74	+0.5
2,542,669	-		CA265_RS10295	0.75	-0.5
2,542,686	+		CA265_RS10295	0.76	-0.2
2,542,687	-		CA265_RS10295	0.76	-0.1
2,542,687	-		CA265_RS10295	0.76	-0.5
2,542,695	+		CA265_RS10295	0.76	+0.0
2,542,756	+		CA265_RS10295	0.79	+0.2
2,542,768	+		CA265_RS10295	0.80	+0.3
2,542,781	-		CA265_RS10295	0.80	+0.2
2,542,781	-		CA265_RS10295	0.80	+0.8
2,542,816	-		CA265_RS10295	0.82	+0.5
2,542,924	+		CA265_RS10295	0.88	+0.2
2,542,925	-		CA265_RS10295	0.88	-0.4
2,542,954	+		CA265_RS10295	0.89	-0.3
2,543,001	+				-0.3
2,543,002	-				+0.1
2,543,010	+				-0.1
2,543,016	+				-0.5
2,543,017	-				+0.1
2,543,050	-				+0.5
2,543,102	+				+0.8
2,543,102	+				+0.2
2,543,103	-				-0.4
2,543,103	-				-0.6
2,543,136	+				-0.0
2,543,167	+				-0.1
2,543,195	-				+0.6
2,543,203	+				-0.1
2,543,251	-				+0.0
2,543,311	+				-1.1
2,543,340	+				-0.5
2,543,520	+		CA265_RS10300	0.11	-0.2
2,543,530	-		CA265_RS10300	0.12	+0.4
2,543,530	-		CA265_RS10300	0.12	-0.6
2,543,633	+		CA265_RS10300	0.15	-0.4
2,543,657	+		CA265_RS10300	0.16	+0.3
2,543,660	-		CA265_RS10300	0.16	+0.3
2,543,690	+		CA265_RS10300	0.17	+0.1
2,543,698	-		CA265_RS10300	0.17	+0.5
2,543,724	+		CA265_RS10300	0.18	-0.2
2,543,743	-		CA265_RS10300	0.18	-1.0
2,543,743	-		CA265_RS10300	0.18	-0.6
2,543,743	-		CA265_RS10300	0.18	+0.5
2,543,743	-		CA265_RS10300	0.18	-1.0
2,543,745	+		CA265_RS10300	0.18	+0.9
2,543,766	+		CA265_RS10300	0.19	-0.4
2,543,804	-		CA265_RS10300	0.20	-1.2
2,543,882	+		CA265_RS10300	0.23	-0.3
2,543,882	+		CA265_RS10300	0.23	+0.8
2,543,913	+		CA265_RS10300	0.24	-0.4
2,543,976	+		CA265_RS10300	0.26	-0.5
2,543,982	+		CA265_RS10300	0.26	+0.0
2,543,985	-		CA265_RS10300	0.26	+0.3
2,544,050	-		CA265_RS10300	0.28	+0.6
2,544,085	-		CA265_RS10300	0.29	-1.1
2,544,086	+		CA265_RS10300	0.29	-1.2
2,544,086	+		CA265_RS10300	0.29	+0.3
2,544,087	-		CA265_RS10300	0.29	-0.3
2,544,087	-		CA265_RS10300	0.29	+0.5
2,544,091	-		CA265_RS10300	0.29	-0.3
2,544,091	-		CA265_RS10300	0.29	-0.2
2,544,096	-		CA265_RS10300	0.30	-1.0
2,544,110	+		CA265_RS10300	0.30	-0.0
2,544,112	+		CA265_RS10300	0.30	+0.6
2,544,124	+		CA265_RS10300	0.30	-0.3
2,544,189	+		CA265_RS10300	0.33	-0.2
2,544,210	+		CA265_RS10300	0.33	-0.8
2,544,211	-		CA265_RS10300	0.33	-0.3
2,544,299	+		CA265_RS10300	0.36	-0.6
2,544,344	+		CA265_RS10300	0.37	+0.1
2,544,345	-		CA265_RS10300	0.37	-0.4
2,544,348	+		CA265_RS10300	0.38	+0.2
2,544,356	-		CA265_RS10300	0.38	-0.5
2,544,433	-		CA265_RS10300	0.40	-0.4
2,544,484	-		CA265_RS10300	0.42	+0.4
2,544,485	+		CA265_RS10300	0.42	-1.1
2,544,495	+		CA265_RS10300	0.42	+0.4
2,544,527	+		CA265_RS10300	0.43	-0.0
2,544,662	+		CA265_RS10300	0.48	+0.3
2,544,662	+		CA265_RS10300	0.48	+1.1
2,544,662	+		CA265_RS10300	0.48	-0.7
2,544,667	+		CA265_RS10300	0.48	+0.2
2,544,719	+		CA265_RS10300	0.49	+0.7
2,544,728	+		CA265_RS10300	0.50	+1.5
2,544,788	+		CA265_RS10300	0.52	-0.3
2,544,788	+		CA265_RS10300	0.52	-0.0
2,544,795	+		CA265_RS10300	0.52	-0.8
2,544,825	-		CA265_RS10300	0.53	+0.5
2,545,006	-		CA265_RS10300	0.58	-0.0
2,545,015	-		CA265_RS10300	0.59	+0.2
2,545,054	-		CA265_RS10300	0.60	-0.0
2,545,132	-		CA265_RS10300	0.62	+0.1
2,545,135	+		CA265_RS10300	0.63	-0.5
2,545,136	-		CA265_RS10300	0.63	+0.2
2,545,176	+		CA265_RS10300	0.64	-0.5
2,545,178	+		CA265_RS10300	0.64	+1.1
2,545,178	+		CA265_RS10300	0.64	+0.0
2,545,179	-		CA265_RS10300	0.64	-0.3
2,545,308	+		CA265_RS10300	0.68	+0.2
2,545,312	+		CA265_RS10300	0.68	+0.3
2,545,313	-		CA265_RS10300	0.68	-1.3
2,545,314	+		CA265_RS10300	0.68	-0.5
2,545,315	-				+3.8
2,545,315	-		CA265_RS10300	0.68	+0.4
2,545,427	-		CA265_RS10300	0.72	-0.3
2,545,436	-		CA265_RS10300	0.72	-0.1
2,545,451	+		CA265_RS10300	0.73	-0.4
2,545,461	-		CA265_RS10300	0.73	-0.1
2,545,478	-		CA265_RS10300	0.73	-0.8
2,545,491	+		CA265_RS10300	0.74	+0.2
2,545,569	+		CA265_RS10300	0.76	+0.2
2,545,570	-		CA265_RS10300	0.76	+0.3
2,545,570	-		CA265_RS10300	0.76	-0.2
2,545,672	+		CA265_RS10300	0.80	+0.2
2,545,703	+		CA265_RS10300	0.81	+0.6
2,545,703	+		CA265_RS10300	0.81	+0.4
2,545,704	-		CA265_RS10300	0.81	-0.1
2,545,704	-		CA265_RS10300	0.81	+0.4
2,545,762	+		CA265_RS10300	0.82	-0.3
2,545,762	+		CA265_RS10300	0.82	-0.7
2,545,763	-		CA265_RS10300	0.83	+0.1
2,545,792	+		CA265_RS10300	0.83	+0.1
2,545,793	-		CA265_RS10300	0.83	+0.7
2,545,793	-		CA265_RS10300	0.83	-2.0
2,545,805	-		CA265_RS10300	0.84	+0.0
2,545,836	+		CA265_RS10300	0.85	+0.5
2,545,837	-		CA265_RS10300	0.85	-1.1
2,545,838	+		CA265_RS10300	0.85	+0.0
2,545,912	+		CA265_RS10300	0.87	-1.2
2,545,912	+		CA265_RS10300	0.87	+0.1
2,545,913	-		CA265_RS10300	0.87	+0.1
2,545,941	+		CA265_RS10300	0.88	+0.2
2,546,033	-				+0.1
2,546,033	-				-0.4
2,546,052	+				+0.2
2,546,066	-				-0.1
2,546,156	-				+0.1
2,546,211	+				-0.5
2,546,253	+				-0.3
2,546,254	-				+0.1
2,546,329	+				+0.2
2,546,350	+				+0.2
2,546,384	-				+0.1
2,546,459	-				+0.0
2,546,464	+				+0.7
2,546,464	+				+0.2
2,546,465	-				+0.1
2,546,468	+				-0.3
2,546,500	+				+0.6
2,546,500	+				-0.6
2,546,520	+				+0.5
2,546,558	+				-0.3
2,546,558	+				+0.1
2,546,558	+				-1.5
2,546,623	+				-0.2
2,546,637	+				-0.4
2,546,684	+				-0.0
2,546,689	-				-2.2
2,546,739	-				-2.0
2,546,768	-				-1.5
2,546,861	-				-0.5
2,546,861	-				+0.7
2,546,982	+				-0.6
2,546,982	+				-0.5
2,546,983	-				+0.2
2,547,119	-				+1.5