Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05445

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
1,310,115	+		CA265_RS05440	0.19	+1.6
1,310,116	-		CA265_RS05440	0.19	+0.6
1,310,153	+		CA265_RS05440	0.24	+1.1
1,310,153	+		CA265_RS05440	0.24	+0.4
1,310,159	+		CA265_RS05440	0.25	-0.2
1,310,237	+		CA265_RS05440	0.35	+1.1
1,310,238	-		CA265_RS05440	0.35	+0.7
1,310,238	-		CA265_RS05440	0.35	-1.6
1,310,239	-		CA265_RS05440	0.35	+0.9
1,310,258	+		CA265_RS05440	0.38	+0.3
1,310,258	+		CA265_RS05440	0.38	+0.6
1,310,258	+		CA265_RS05440	0.38	-0.0
1,310,258	+		CA265_RS05440	0.38	-0.7
1,310,402	-		CA265_RS05440	0.57	-0.2
1,310,441	+		CA265_RS05440	0.63	+0.0
1,310,465	+		CA265_RS05440	0.66	+0.3
1,310,466	-		CA265_RS05440	0.66	+0.6
1,310,471	-		CA265_RS05440	0.67	+0.0
1,310,486	-		CA265_RS05440	0.69	-0.2
1,310,543	-		CA265_RS05440	0.76	-0.9
1,310,624	+		CA265_RS05440	0.87	-0.8
1,310,625	-		CA265_RS05440	0.87	-0.4
1,310,710	-				-1.2
1,310,725	-				+0.0
1,310,990	+				-0.8
1,310,992	+				-0.0
1,310,992	+				+0.8
1,311,000	-				+0.7
1,311,146	+				-0.5
1,311,147	-				+0.7
1,311,158	+				-0.6
1,311,203	+				+0.2
1,311,203	+				-0.5
1,311,203	+				-0.3
1,311,204	-				-1.0
1,311,288	-				-0.7
1,311,302	+				+0.5
1,311,365	-				+0.3
1,311,369	+				+0.1
1,311,391	+				-1.0
1,311,411	+				-0.3
1,311,447	-		CA265_RS05445	0.11	-0.3
1,311,447	-		CA265_RS05445	0.11	-1.0
1,311,452	+		CA265_RS05445	0.11	+0.0
1,311,459	+		CA265_RS05445	0.11	+0.8
1,311,556	-		CA265_RS05445	0.14	+0.3
1,311,589	-		CA265_RS05445	0.15	+0.4
1,311,589	-		CA265_RS05445	0.15	-0.3
1,311,667	-		CA265_RS05445	0.17	+0.1
1,311,667	-		CA265_RS05445	0.17	-0.3
1,311,669	+		CA265_RS05445	0.18	-0.4
1,311,750	+		CA265_RS05445	0.20	+0.6
1,311,750	+		CA265_RS05445	0.20	-0.4
1,311,883	+		CA265_RS05445	0.24	+0.4
1,311,883	+		CA265_RS05445	0.24	-0.4
1,311,884	-		CA265_RS05445	0.24	-0.8
1,311,884	-		CA265_RS05445	0.24	+0.7
1,311,884	-		CA265_RS05445	0.24	-0.7
1,311,944	-		CA265_RS05445	0.26	-0.4
1,312,079	-		CA265_RS05445	0.30	-0.1
1,312,114	+		CA265_RS05445	0.31	-0.7
1,312,116	+		CA265_RS05445	0.31	+0.4
1,312,117	-		CA265_RS05445	0.31	+2.0
1,312,117	-		CA265_RS05445	0.31	+0.6
1,312,117	-		CA265_RS05445	0.31	+0.0
1,312,121	-		CA265_RS05445	0.31	+0.2
1,312,124	-		CA265_RS05445	0.31	-0.6
1,312,153	+		CA265_RS05445	0.32	+0.6
1,312,279	+		CA265_RS05445	0.36	+0.5
1,312,279	+		CA265_RS05445	0.36	-0.2
1,312,280	-		CA265_RS05445	0.36	-0.1
1,312,370	-		CA265_RS05445	0.39	-0.3
1,312,383	+		CA265_RS05445	0.39	-0.0
1,312,405	-		CA265_RS05445	0.40	-0.7
1,312,407	-		CA265_RS05445	0.40	-0.2
1,312,487	-		CA265_RS05445	0.42	-0.4
1,312,488	+		CA265_RS05445	0.42	-0.3
1,312,488	+		CA265_RS05445	0.42	-0.4
1,312,489	-		CA265_RS05445	0.42	+0.4
1,312,552	-		CA265_RS05445	0.44	+0.3
1,312,554	+		CA265_RS05445	0.44	+0.1
1,312,555	-		CA265_RS05445	0.44	+0.3
1,312,578	-		CA265_RS05445	0.45	-0.3
1,312,621	-		CA265_RS05445	0.46	+0.6
1,312,663	-		CA265_RS05445	0.48	-0.6
1,312,663	-		CA265_RS05445	0.48	+0.4
1,312,691	+		CA265_RS05445	0.48	+0.1
1,312,692	-		CA265_RS05445	0.48	-0.0
1,312,756	+		CA265_RS05445	0.50	-0.5
1,312,756	+		CA265_RS05445	0.50	+0.8
1,312,756	+		CA265_RS05445	0.50	-0.5
1,312,757	-		CA265_RS05445	0.50	+0.3
1,312,793	-		CA265_RS05445	0.52	+0.4
1,312,796	+		CA265_RS05445	0.52	+0.2
1,312,820	-		CA265_RS05445	0.52	-0.4
1,312,835	-		CA265_RS05445	0.53	+0.1
1,312,835	-		CA265_RS05445	0.53	+0.6
1,312,836	+		CA265_RS05445	0.53	+0.2
1,312,931	-		CA265_RS05445	0.56	+0.0
1,312,981	-		CA265_RS05445	0.57	+0.1
1,312,991	-		CA265_RS05445	0.58	+0.3
1,312,991	-		CA265_RS05445	0.58	-0.0
1,313,111	+		CA265_RS05445	0.61	-0.1
1,313,112	-		CA265_RS05445	0.61	-0.6
1,313,175	+		CA265_RS05445	0.63	+0.2
1,313,241	+		CA265_RS05445	0.65	-0.1
1,313,368	+		CA265_RS05445	0.69	-0.3
1,313,388	+		CA265_RS05445	0.70	-0.3
1,313,394	+		CA265_RS05445	0.70	+1.6
1,313,407	-		CA265_RS05445	0.70	+0.3
1,313,449	+		CA265_RS05445	0.71	-0.3
1,313,449	+		CA265_RS05445	0.71	-0.3
1,313,449	+		CA265_RS05445	0.71	+1.0
1,313,449	+		CA265_RS05445	0.71	-0.4
1,313,459	+		CA265_RS05445	0.72	+0.3
1,313,460	-		CA265_RS05445	0.72	+0.3
1,313,530	+		CA265_RS05445	0.74	-0.3
1,313,530	+		CA265_RS05445	0.74	+0.2
1,313,530	+		CA265_RS05445	0.74	+0.2
1,313,531	-		CA265_RS05445	0.74	-0.1
1,313,532	+		CA265_RS05445	0.74	-0.1
1,313,579	-		CA265_RS05445	0.75	+0.0
1,313,579	-		CA265_RS05445	0.75	+0.6
1,313,592	+		CA265_RS05445	0.76	+0.1
1,313,644	+		CA265_RS05445	0.77	-0.0
1,313,681	+		CA265_RS05445	0.78	+0.0
1,313,682	-		CA265_RS05445	0.78	+0.5
1,313,799	+		CA265_RS05445	0.82	+1.1
1,313,836	-		CA265_RS05445	0.83	+1.8
1,313,865	+		CA265_RS05445	0.84	+0.3
1,313,886	+		CA265_RS05445	0.85	-0.0
1,313,886	+		CA265_RS05445	0.85	+0.2
1,313,890	-		CA265_RS05445	0.85	-0.5
1,313,890	-		CA265_RS05445	0.85	+0.5
1,313,890	-		CA265_RS05445	0.85	-0.6
1,313,972	-		CA265_RS05445	0.87	-0.3
1,313,985	+		CA265_RS05445	0.88	-0.4
1,313,986	-		CA265_RS05445	0.88	+1.6
1,313,986	-		CA265_RS05445	0.88	+0.2
1,314,082	-				-0.2
1,314,133	+				+0.6
1,314,134	-				+0.3
1,314,166	-				+0.3
1,314,274	-				-0.3
1,314,285	-				-0.2
1,314,345	+				+0.2
1,314,345	+				+1.1
1,314,349	+				-0.0
1,314,350	-				+0.1
1,314,350	-				-0.3
1,314,367	+				+0.0
1,314,409	+				-0.1
1,314,414	-				+0.6
1,314,436	+				+0.4
1,314,438	+				-0.4
1,314,439	-				+0.1
1,314,439	-				-0.3
1,314,552	-				-0.1
1,314,555	+				+0.1
1,314,555	+				-0.6
1,314,556	-				+0.6
1,314,556	-				+0.2
1,314,569	-				-0.6
1,314,679	-		CA265_RS05450	0.14	-0.1
1,314,679	-		CA265_RS05450	0.14	+0.1
1,314,717	+		CA265_RS05450	0.16	-0.2
1,314,717	+		CA265_RS05450	0.16	+0.1
1,314,738	+		CA265_RS05450	0.18	+0.0
1,314,776	-		CA265_RS05450	0.20	-0.6
1,314,785	+		CA265_RS05450	0.20	+0.7
1,314,785	+		CA265_RS05450	0.20	+0.6
1,314,805	+		CA265_RS05450	0.21	+0.4
1,314,900	+		CA265_RS05450	0.27	-0.2
1,315,010	-		CA265_RS05450	0.33	-1.0
1,315,049	-		CA265_RS05450	0.35	+0.6
1,315,057	+		CA265_RS05450	0.36	+0.6
1,315,057	+		CA265_RS05450	0.36	-1.0
1,315,197	+		CA265_RS05450	0.43	+0.4
1,315,206	+		CA265_RS05450	0.44	+0.5
1,315,301	-		CA265_RS05450	0.49	+0.0
1,315,301	-		CA265_RS05450	0.49	+0.4
1,315,366	+		CA265_RS05450	0.53	-0.4
1,315,369	-		CA265_RS05450	0.53	+0.7
1,315,369	-		CA265_RS05450	0.53	+0.1
1,315,386	+		CA265_RS05450	0.54	+0.3
1,315,387	-		CA265_RS05450	0.54	+0.4
1,315,387	-		CA265_RS05450	0.54	+0.3